Literature DB >> 35873096

Graph Convolutional Networks for Model-Based Learning in Nonlinear Inverse Problems.

William Herzberg1, Daniel B Rowe1, Andreas Hauptmann2, Sarah J Hamilton1.   

Abstract

The majority of model-based learned image reconstruction methods in medical imaging have been limited to uniform domains, such as pixelated images. If the underlying model is solved on nonuniform meshes, arising from a finite element method typical for nonlinear inverse problems, interpolation and embeddings are needed. To overcome this, we present a flexible framework to extend model-based learning directly to nonuniform meshes, by interpreting the mesh as a graph and formulating our network architectures using graph convolutional neural networks. This gives rise to the proposed iterative Graph Convolutional Newton-type Method (GCNM), which includes the forward model in the solution of the inverse problem, while all updates are directly computed by the network on the problem specific mesh. We present results for Electrical Impedance Tomography, a severely ill-posed nonlinear inverse problem that is frequently solved via optimization-based methods, where the forward problem is solved by finite element methods. Results for absolute EIT imaging are compared to standard iterative methods as well as a graph residual network. We show that the GCNM has good generalizability to different domain shapes and meshes, out of distribution data as well as experimental data, from purely simulated training data and without transfer training.

Entities:  

Keywords:  Finite element method; conductivity; electrical impedance tomography; graph convolutional networks; model-based deep learning

Year:  2021        PMID: 35873096      PMCID: PMC9307146          DOI: 10.1109/tci.2021.3132190

Source DB:  PubMed          Journal:  IEEE Trans Comput Imaging


  21 in total

1.  Reconstructions of chest phantoms by the D-bar method for electrical impedance tomography.

Authors:  David Isaacson; Jennifer L Mueller; Jonathan C Newell; Samuli Siltanen
Journal:  IEEE Trans Med Imaging       Date:  2004-07       Impact factor: 10.048

2.  A Real-time D-bar Algorithm for 2-D Electrical Impedance Tomography Data.

Authors:  Melody Dodd; Jennifer L Mueller
Journal:  Inverse Probl Imaging (Springfield)       Date:  2014-11-01       Impact factor: 1.639

3.  Electrical impedance tomography of complex conductivity distributions with noncircular boundary.

Authors:  H Jain; D Isaacson; P M Edic; J C Newell
Journal:  IEEE Trans Biomed Eng       Date:  1997-11       Impact factor: 4.538

4.  Deep D-Bar: Real-Time Electrical Impedance Tomography Imaging With Deep Neural Networks.

Authors:  Sarah Jane Hamilton; A Hauptmann
Journal:  IEEE Trans Med Imaging       Date:  2018-04-27       Impact factor: 10.048

5.  Dominant-Current Deep Learning Scheme for Electrical Impedance Tomography.

Authors:  Zhun Wei; Dong Liu; Xudong Chen
Journal:  IEEE Trans Biomed Eng       Date:  2019-01-09       Impact factor: 4.538

6.  Shape Reconstruction Using Boolean Operations in Electrical Impedance Tomography.

Authors:  Dong Liu; Danping Gu; Danny Smyl; Jiansong Deng; Jiangfeng Du
Journal:  IEEE Trans Med Imaging       Date:  2020-03-24       Impact factor: 10.048

7.  A deep convolutional neural network using directional wavelets for low-dose X-ray CT reconstruction.

Authors:  Eunhee Kang; Junhong Min; Jong Chul Ye
Journal:  Med Phys       Date:  2017-10       Impact factor: 4.071

8.  Neural network-based supervised descent method for 2D electrical impedance tomography.

Authors:  Zhichao Lin; Rui Guo; Ke Zhang; Maokun Li; Fan Yang; Shenheng Xu And; Aria Abubakar
Journal:  Physiol Meas       Date:  2020-08-11       Impact factor: 2.833

9.  ACT3: a high-speed, high-precision electrical impedance tomograph.

Authors:  R D Cook; G J Saulnier; D G Gisser; J C Goble; J C Newell; D Isaacson
Journal:  IEEE Trans Biomed Eng       Date:  1994-08       Impact factor: 4.538

10.  Beltrami-net: domain-independent deep D-bar learning for absolute imaging with electrical impedance tomography (a-EIT).

Authors:  S J Hamilton; A Hänninen; A Hauptmann; V Kolehmainen
Journal:  Physiol Meas       Date:  2019-07-23       Impact factor: 2.833

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  1 in total

1.  Hybrid method for improving Tikhonov-based reconstruction quality in electrical impedance tomography.

Authors:  Meng Wang; Shuo Zheng; Yanyan Shi; Yajun Lou
Journal:  J Med Imaging (Bellingham)       Date:  2022-10-17
  1 in total

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