Literature DB >> 34725154

Phase separation in fluids with many interacting components.

Krishna Shrinivas1, Michael P Brenner2,3.   

Abstract

Fluids in natural systems, like the cytoplasm of a cell, often contain thousands of molecular species that are organized into multiple coexisting phases that enable diverse and specific functions. How interactions between numerous molecular species encode for various emergent phases is not well understood. Here, we leverage approaches from random-matrix theory and statistical physics to describe the emergent phase behavior of fluid mixtures with many species whose interactions are drawn randomly from an underlying distribution. Through numerical simulation and stability analyses, we show that these mixtures exhibit staged phase-separation kinetics and are characterized by multiple coexisting phases at steady state with distinct compositions. Random-matrix theory predicts the number of coexisting phases, validated by simulations with diverse component numbers and interaction parameters. Surprisingly, this model predicts an upper bound on the number of phases, derived from dynamical considerations, that is much lower than the limit from the Gibbs phase rule, which is obtained from equilibrium thermodynamic constraints. We design ensembles that encode either linear or nonmonotonic scaling relationships between the number of components and coexisting phases, which we validate through simulation and theory. Finally, inspired by parallels in biological systems, we show that including nonequilibrium turnover of components through chemical reactions can tunably modulate the number of coexisting phases at steady state without changing overall fluid composition. Together, our study provides a model framework that describes the emergent dynamical and steady-state phase behavior of liquid-like mixtures with many interacting constituents.

Entities:  

Keywords:  multicomponent; multiphase; phase separation; phase-field simulation; random-matrix theory

Year:  2021        PMID: 34725154      PMCID: PMC8609339          DOI: 10.1073/pnas.2108551118

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  38 in total

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2.  Monte Carlo simulations of phase separation in chemically reactive binary mixtures.

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3.  Quantitative analysis of multilayer organization of proteins and RNA in nuclear speckles at super resolution.

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Journal:  J Cell Sci       Date:  2017-11-13       Impact factor: 5.285

4.  Will a large complex system be stable?

Authors:  R M May
Journal:  Nature       Date:  1972-08-18       Impact factor: 49.962

5.  Networking and Dynamic Switches in Biological Condensates.

Authors:  Ashok A Deniz
Journal:  Cell       Date:  2020-04-16       Impact factor: 41.582

6.  Composition-dependent thermodynamics of intracellular phase separation.

Authors:  Joshua A Riback; Lian Zhu; Mylene C Ferrolino; Michele Tolbert; Diana M Mitrea; David W Sanders; Ming-Tzo Wei; Richard W Kriwacki; Clifford P Brangwynne
Journal:  Nature       Date:  2020-05-06       Impact factor: 49.962

7.  Competing Protein-RNA Interaction Networks Control Multiphase Intracellular Organization.

Authors:  David W Sanders; Nancy Kedersha; Daniel S W Lee; Amy R Strom; Victoria Drake; Joshua A Riback; Dan Bracha; Jorine M Eeftens; Allana Iwanicki; Alicia Wang; Ming-Tzo Wei; Gena Whitney; Shawn M Lyons; Paul Anderson; William M Jacobs; Pavel Ivanov; Clifford P Brangwynne
Journal:  Cell       Date:  2020-04-16       Impact factor: 41.582

8.  A Molecular Grammar Governing the Driving Forces for Phase Separation of Prion-like RNA Binding Proteins.

Authors:  Jie Wang; Jeong-Mo Choi; Alex S Holehouse; Hyun O Lee; Xiaojie Zhang; Marcus Jahnel; Shovamayee Maharana; Régis Lemaitre; Andrei Pozniakovsky; David Drechsel; Ina Poser; Rohit V Pappu; Simon Alberti; Anthony A Hyman
Journal:  Cell       Date:  2018-06-28       Impact factor: 41.582

9.  Sequence-encoded and composition-dependent protein-RNA interactions control multiphasic condensate morphologies.

Authors:  Muralikrishna Raju; Ibraheem Alshareedah; Taranpreet Kaur; Richoo B Davis; Davit A Potoyan; Priya R Banerjee
Journal:  Nat Commun       Date:  2021-02-08       Impact factor: 14.919

Review 10.  Biomolecular condensates: organizers of cellular biochemistry.

Authors:  Salman F Banani; Hyun O Lee; Anthony A Hyman; Michael K Rosen
Journal:  Nat Rev Mol Cell Biol       Date:  2017-02-22       Impact factor: 94.444

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  1 in total

1.  Evolved interactions stabilize many coexisting phases in multicomponent liquids.

Authors:  David Zwicker; Liedewij Laan
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-06       Impact factor: 12.779

  1 in total

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