Literature DB >> 35858381

Uncovering the enigmatic evolution of bears in greater depth: The hybrid origin of the Asiatic black bear.

Tiantian Zou1, Weimin Kuang1, Tingting Yin2, Laurent Frantz3,4, Chang Zhang1, Jianquan Liu5,6, Hong Wu1, Li Yu1.   

Abstract

Bears are fascinating mammals because of their complex pattern of speciation and rapid evolution of distinct phenotypes. Interspecific hybridization has been common and has shaped the complex evolutionary history of bears. In this study, based on the largest population-level genomic dataset to date involving all Ursinae species and recently developed methods for detecting hybrid speciation, we provide explicit evidence for the hybrid origin of Asiatic black bears, which arose through historical hybridization between the ancestor of polar bear/brown bear/American black bears and the ancestor of sun bear/sloth bears. This was inferred to have occurred soon after the divergence of the two parental lineages in Eurasia due to climate-driven population expansion and dispersal. In addition, we found that the intermediate body size of this hybrid species arose from its combination of relevant genes derived from two parental lineages of contrasting sizes. This and alternate fixation of numerous other loci that had diverged between parental lineages may have initiated the reproductive isolation of the Asiatic black bear from its two parents. Our study sheds further light on the evolutionary history of bears and documents the importance of hybridization in new species formation and phenotypic evolution in mammals.

Entities:  

Keywords:  Asiatic black bear; Ursinae; hybridization; population genomics

Mesh:

Year:  2022        PMID: 35858381      PMCID: PMC9351369          DOI: 10.1073/pnas.2120307119

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   12.779


  58 in total

1.  Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.

Authors:  J Castresana
Journal:  Mol Biol Evol       Date:  2000-04       Impact factor: 16.240

2.  MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.

Authors:  Kazutaka Katoh; Kazuharu Misawa; Kei-ichi Kuma; Takashi Miyata
Journal:  Nucleic Acids Res       Date:  2002-07-15       Impact factor: 16.971

3.  Evidence for ecology's role in speciation.

Authors:  Jeffrey S McKinnon; Seiichi Mori; Benjamin K Blackman; Lior David; David M Kingsley; Leia Jamieson; Jennifer Chou; Dolph Schluter
Journal:  Nature       Date:  2004-05-20       Impact factor: 49.962

4.  The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.

Authors:  Aaron McKenna; Matthew Hanna; Eric Banks; Andrey Sivachenko; Kristian Cibulskis; Andrew Kernytsky; Kiran Garimella; David Altshuler; Stacey Gabriel; Mark Daly; Mark A DePristo
Journal:  Genome Res       Date:  2010-07-19       Impact factor: 9.043

5.  Application of phylogenetic networks in evolutionary studies.

Authors:  Daniel H Huson; David Bryant
Journal:  Mol Biol Evol       Date:  2005-10-12       Impact factor: 16.240

6.  Testing for ancient admixture between closely related populations.

Authors:  Eric Y Durand; Nick Patterson; David Reich; Montgomery Slatkin
Journal:  Mol Biol Evol       Date:  2011-02-15       Impact factor: 16.240

7.  Hybrid speciation via inheritance of alternate alleles of parental isolating genes.

Authors:  Zefu Wang; Yuanzhong Jiang; Hao Bi; Zhiqiang Lu; Yazhen Ma; Xiaoyue Yang; Ningning Chen; Bin Tian; Bingbing Liu; Xingxing Mao; Tao Ma; Stephen P DiFazio; Quanjun Hu; Richard J Abbott; Jianquan Liu
Journal:  Mol Plant       Date:  2020-11-18       Impact factor: 13.164

8.  Population genomics reveal recent speciation and rapid evolutionary adaptation in polar bears.

Authors:  Shiping Liu; Eline D Lorenzen; Matteo Fumagalli; Bo Li; Kelley Harris; Zijun Xiong; Long Zhou; Thorfinn Sand Korneliussen; Mehmet Somel; Courtney Babbitt; Greg Wray; Jianwen Li; Weiming He; Zhuo Wang; Wenjing Fu; Xueyan Xiang; Claire C Morgan; Aoife Doherty; Mary J O'Connell; James O McInerney; Erik W Born; Love Dalén; Rune Dietz; Ludovic Orlando; Christian Sonne; Guojie Zhang; Rasmus Nielsen; Eske Willerslev; Jun Wang
Journal:  Cell       Date:  2014-05-08       Impact factor: 41.582

9.  The variant call format and VCFtools.

Authors:  Petr Danecek; Adam Auton; Goncalo Abecasis; Cornelis A Albers; Eric Banks; Mark A DePristo; Robert E Handsaker; Gerton Lunter; Gabor T Marth; Stephen T Sherry; Gilean McVean; Richard Durbin
Journal:  Bioinformatics       Date:  2011-06-07       Impact factor: 6.937

10.  Bears in a forest of gene trees: phylogenetic inference is complicated by incomplete lineage sorting and gene flow.

Authors:  Verena E Kutschera; Tobias Bidon; Frank Hailer; Julia L Rodi; Steven R Fain; Axel Janke
Journal:  Mol Biol Evol       Date:  2014-06-05       Impact factor: 16.240

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  1 in total

1.  Uncovering the enigmatic evolution of bears in greater depth: The hybrid origin of the Asiatic black bear.

Authors:  Tiantian Zou; Weimin Kuang; Tingting Yin; Laurent Frantz; Chang Zhang; Jianquan Liu; Hong Wu; Li Yu
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-18       Impact factor: 12.779

  1 in total

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