Literature DB >> 24813606

Population genomics reveal recent speciation and rapid evolutionary adaptation in polar bears.

Shiping Liu1, Eline D Lorenzen2, Matteo Fumagalli3, Bo Li4, Kelley Harris5, Zijun Xiong4, Long Zhou4, Thorfinn Sand Korneliussen6, Mehmet Somel3, Courtney Babbitt7, Greg Wray7, Jianwen Li4, Weiming He1, Zhuo Wang4, Wenjing Fu4, Xueyan Xiang8, Claire C Morgan9, Aoife Doherty10, Mary J O'Connell9, James O McInerney10, Erik W Born11, Love Dalén12, Rune Dietz13, Ludovic Orlando6, Christian Sonne13, Guojie Zhang14, Rasmus Nielsen15, Eske Willerslev16, Jun Wang17.   

Abstract

Polar bears are uniquely adapted to life in the High Arctic and have undergone drastic physiological changes in response to Arctic climates and a hyper-lipid diet of primarily marine mammal prey. We analyzed 89 complete genomes of polar bear and brown bear using population genomic modeling and show that the species diverged only 479-343 thousand years BP. We find that genes on the polar bear lineage have been under stronger positive selection than in brown bears; nine of the top 16 genes under strong positive selection are associated with cardiomyopathy and vascular disease, implying important reorganization of the cardiovascular system. One of the genes showing the strongest evidence of selection, APOB, encodes the primary lipoprotein component of low-density lipoprotein (LDL); functional mutations in APOB may explain how polar bears are able to cope with life-long elevated LDL levels that are associated with high risk of heart disease in humans.
Copyright © 2014 Elsevier Inc. All rights reserved.

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Year:  2014        PMID: 24813606      PMCID: PMC4089990          DOI: 10.1016/j.cell.2014.03.054

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  44 in total

1.  Unusual splicing events result in distinct Xin isoforms that associate differentially with filamin c and Mena/VASP.

Authors:  Peter F M van der Ven; Elisabeth Ehler; Padmanabhan Vakeel; Stefan Eulitz; Jörg A Schenk; Hendrik Milting; Burkhard Micheel; Dieter O Fürst
Journal:  Exp Cell Res       Date:  2006-04-24       Impact factor: 3.905

2.  Estimation of individual admixture: analytical and study design considerations.

Authors:  Hua Tang; Jie Peng; Pei Wang; Neil J Risch
Journal:  Genet Epidemiol       Date:  2005-05       Impact factor: 2.135

3.  Combined analysis of fourteen nuclear genes refines the Ursidae phylogeny.

Authors:  Marie Pagès; Sébastien Calvignac; Catherine Klein; Mathilde Paris; Sandrine Hughes; Catherine Hänni
Journal:  Mol Phylogenet Evol       Date:  2007-11-05       Impact factor: 4.286

4.  Natural variability of Greenland climate, vegetation, and ice volume during the past million years.

Authors:  Anne de Vernal; Claude Hillaire-Marcel
Journal:  Science       Date:  2008-06-20       Impact factor: 47.728

5.  Grey, a novel mutation in the murine Lyst gene, causes the beige phenotype by skipping of exon 25.

Authors:  Fabian Runkel; Heinrich Büssow; Kevin L Seburn; Gregory A Cox; Diane McVey Ward; Jerry Kaplan; Thomas Franz
Journal:  Mamm Genome       Date:  2006-03-03       Impact factor: 2.957

Review 6.  Lipid disorders and mutations in the APOB gene.

Authors:  Amanda J Whitfield; P Hugh R Barrett; Frank M van Bockxmeer; John R Burnett
Journal:  Clin Chem       Date:  2004-08-12       Impact factor: 8.327

7.  Ancient biomolecules from deep ice cores reveal a forested southern Greenland.

Authors:  Eske Willerslev; Enrico Cappellini; Wouter Boomsma; Rasmus Nielsen; Martin B Hebsgaard; Tina B Brand; Michael Hofreiter; Michael Bunce; Hendrik N Poinar; Dorthe Dahl-Jensen; Sigfus Johnsen; Jørgen Peder Steffensen; Ole Bennike; Jean-Luc Schwenninger; Roger Nathan; Simon Armitage; Cees-Jan de Hoog; Vasily Alfimov; Marcus Christl; Juerg Beer; Raimund Muscheler; Joel Barker; Martin Sharp; Kirsty E H Penkman; James Haile; Pierre Taberlet; M Thomas P Gilbert; Antonella Casoli; Elisa Campani; Matthew J Collins
Journal:  Science       Date:  2007-07-06       Impact factor: 47.728

8.  Targeted disruption of p185/Cul7 gene results in abnormal vascular morphogenesis.

Authors:  Takehiro Arai; Jocelyn S Kasper; Jeffrey R Skaar; Syed Hamid Ali; Chiaki Takahashi; James A DeCaprio
Journal:  Proc Natl Acad Sci U S A       Date:  2003-08-06       Impact factor: 11.205

9.  A map of recent positive selection in the human genome.

Authors:  Benjamin F Voight; Sridhar Kudaravalli; Xiaoquan Wen; Jonathan K Pritchard
Journal:  PLoS Biol       Date:  2006-03-07       Impact factor: 8.029

10.  Genetic effects on coat colour in cattle: dilution of eumelanin and phaeomelanin pigments in an F2-Backcross Charolais x Holstein population.

Authors:  Beatriz Gutiérrez-Gil; Pamela Wiener; John L Williams
Journal:  BMC Genet       Date:  2007-08-16       Impact factor: 2.797

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  119 in total

Review 1.  Hybridization in human evolution: Insights from other organisms.

Authors:  Rebecca R Ackermann; Michael L Arnold; Marcella D Baiz; James A Cahill; Liliana Cortés-Ortiz; Ben J Evans; B Rosemary Grant; Peter R Grant; Benedikt Hallgrimsson; Robyn A Humphreys; Clifford J Jolly; Joanna Malukiewicz; Christopher J Percival; Terrence B Ritzman; Christian Roos; Charles C Roseman; Lauren Schroeder; Fred H Smith; Kerryn A Warren; Robert K Wayne; Dietmar Zinner
Journal:  Evol Anthropol       Date:  2019-06-20

2.  Evolutionary Adaptation and Amyloid Formation: Does the Reduced Amyloidogenicity and Cytotoxicity of Ursine Amylin Contribute to the Metabolic Adaption of Bears and Polar Bears?

Authors:  Rehana Akter; Andisheh Abedini; Zachary Ridgway; Xiaoxue Zhang; Joel Kleinberg; Ann Marie Schmidt; Daniel P Raleigh
Journal:  Isr J Chem       Date:  2016-12-19       Impact factor: 3.333

3.  Gene-culture coevolution in whales and dolphins.

Authors:  Hal Whitehead
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-24       Impact factor: 11.205

4.  Evolution of V genes from the TRV loci of mammals.

Authors:  David N Olivieri; Santiago Gambón-Cerdá; Francisco Gambón-Deza
Journal:  Immunogenetics       Date:  2015-05-31       Impact factor: 2.846

5.  Comparative genomics: beyond the horizon of the next research grant.

Authors:  Frans Schuit
Journal:  Diabetologia       Date:  2015-05-14       Impact factor: 10.122

Review 6.  The Genome 10K Project: a way forward.

Authors:  Klaus-Peter Koepfli; Benedict Paten; Stephen J O'Brien
Journal:  Annu Rev Anim Biosci       Date:  2015       Impact factor: 8.923

7.  News Feature: Can animal culture drive evolution?

Authors:  Carolyn Beans
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-25       Impact factor: 11.205

Review 8.  Challenges in Species Tree Estimation Under the Multispecies Coalescent Model.

Authors:  Bo Xu; Ziheng Yang
Journal:  Genetics       Date:  2016-12       Impact factor: 4.562

9.  Inferring species divergence times using pairwise sequential Markovian coalescent modelling and low-coverage genomic data.

Authors:  James A Cahill; André E R Soares; Richard E Green; Beth Shapiro
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-07-19       Impact factor: 6.237

10.  ABCC6 Out From the Cold: Identification of the ABCC6 Substrate as a Therapy for Pseudoxanthoma Elasticum and Cardiovascular Disease.

Authors:  Eugenia T Prescott; Imran N Mungrue
Journal:  Austin J Pharmacol Ther       Date:  2014-08-04
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