| Literature DB >> 35855370 |
Ali N Khalilov1,2, Victor N Khrustalev3,4, Elena A Fortalnova3, Mehmet Akkurt5, Sema Öztürk Yıldırım6,7, Ajaya Bhattarai8, İbrahim G Mamedov2.
Abstract
The title compound, C20H24BrNO2, is chiral at the carbon atoms on either side of the oxygen atom of the oxazolidine ring and crystallizes as a racemate. The 1,3-oxazolidine ring adopts an envelope conformation with the N atom in an endo position. The mean plane of the oxazolidine ring makes dihedral angles of 77.74 (10) and 45.50 (11)°, respectively, with the 4-bromo-phenol and 1,3,5-tri-methyl-benzene rings. In the crystal, adjacent mol-ecules are connected via C-H⋯O hydrogen bonds and C-H⋯π inter-actions into layers parallel to the (200) plane. The packing is strengthened by van der Waals inter-actions between parallel mol-ecular layers. A Hirshfeld surface analysis shows that H⋯H (58.2%), C⋯H/H⋯C (18.9%), and Br⋯H/H⋯Br (11.5%) inter-actions are the most abundant in the crystal packing. © Khalilov et al. 2022.Entities:
Keywords: 1,3-oxazolidine; Hirshfeld surface analysis; crystal structure; hydrogen bond; van der Waals interactions
Year: 2022 PMID: 35855370 PMCID: PMC9260360 DOI: 10.1107/S2056989022005928
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1Synthesis of the racemic mixture of 2R,3S,5R- and 2S,3R,5S-oxazolidines.
Figure 2The molecular structure of the title compound. Displacement ellipsoids are drawn at the 50% probability level.
Hydrogen-bond geometry (Å, °)
Cg2 and Cg3 are the centroids of the 4-bromophenol (C6–C11) and 1,3,5-trimethylbenzene (C14–C19) rings, respectively.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O11—H11⋯N3 | 0.81 (4) | 1.89 (4) | 2.644 (2) | 155 (3) |
| C4—H4 | 0.99 | 2.58 | 3.564 (2) | 171 |
| C20—H20 | 0.98 | 2.57 | 3.548 (3) | 173 |
| C20—H20 | 0.98 | 2.55 | 3.332 (3) | 136 |
| C2—H2⋯ | 1.00 | 2.91 | 3.908 (2) | 176 |
| C4—H4 | 0.99 | 2.88 | 3.622 (2) | 132 |
| C21—H21 | 0.98 | 2.93 | 3.723 (4) | 138 |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 3A general view of the C—H⋯O hydrogen bonding and C—H⋯π interactions of the title compound. Symmetry codes: (i) x, −y + , z + ; (ii) x, y + 1, z; (iii) x, −y − , z − ; (iv) x, −y + , z − .
Figure 4Packing view of the title compound along the b axis with the interactions depicted as in Fig. 3 ▸.
Figure 5The two-dimensional fingerprint plots of the title compound, showing (a) all interactions, and delineated into (b) H⋯H, (c) C⋯H/H⋯C and (d) Br⋯H/H⋯Br interactions. [d e and d i represent the distances from a point on the Hirshfeld surface to the nearest atoms outside (external) and inside (internal) the surface, respectively.]
Summary of short interatomic contacts (Å) in the title compound
| Contact | Distance | Symmetry operation |
|---|---|---|
| Br1⋯H10 | 2.96 | 1 − |
| Br1⋯C12 | 3.598 | 1 − |
| C9⋯C8 | 3.409 | 1 − |
| H9⋯H7 | 2.45 |
|
| H11⋯H20 | 2.35 |
|
| C15⋯H21 | 2.80 |
|
| H22 | 3.07 | − |
| H21 | 2.51 | − |
Experimental details
| Crystal data | |
| Chemical formula | C20H24BrNO2 |
|
| 390.30 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 21.1019 (3), 9.01359 (11), 10.03985 (11) |
| β (°) | 96.1425 (11) |
|
| 1898.66 (4) |
|
| 4 |
| Radiation type | Cu |
| μ (mm−1) | 3.03 |
| Crystal size (mm) | 0.32 × 0.04 × 0.03 |
| Data collection | |
| Diffractometer | XtaLAB Synergy, Dualflex, HyPix |
| Absorption correction | Multi-scan ( |
|
| 0.424, 0.882 |
| No. of measured, independent and observed [ | 21431, 4096, 3783 |
|
| 0.043 |
| (sin θ/λ)max (Å−1) | 0.638 |
| Refinement | |
|
| 0.033, 0.096, 1.07 |
| No. of reflections | 4096 |
| No. of parameters | 225 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.58, −0.60 |
Computer programs: CrysAlis PRO (Rigaku OD, 2021 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL2018 (Sheldrick, 2015b ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸) and PLATON (Spek, 2020 ▸).
| C20H24BrNO2 | |
| Monoclinic, | Cu |
| Cell parameters from 13703 reflections | |
| θ = 2.1–78.6° | |
| µ = 3.03 mm−1 | |
| β = 96.1425 (11)° | |
| Needle, colourless | |
| 0.32 × 0.04 × 0.03 mm |
| XtaLAB Synergy, Dualflex, HyPix diffractometer | 3783 reflections with |
| Radiation source: micro-focus sealed X-ray tube | |
| φ and ω scans | θmax = 79.6°, θmin = 2.1° |
| Absorption correction: multi-scan (CrysAlisPro; Rigaku OD, 2021) | |
| 21431 measured reflections | |
| 4096 independent reflections |
| Refinement on | Primary atom site location: difference Fourier map |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: mixed | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4096 reflections | (Δ/σ)max = 0.001 |
| 225 parameters | Δρmax = 0.58 e Å−3 |
| 0 restraints | Δρmin = −0.60 e Å−3 |
| Experimental. CrysAlisPro 1.171.41.117a (Rigaku OD, 2021) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Br1 | 0.54220 (2) | 0.31515 (2) | 0.43375 (2) | 0.02813 (9) | |
| O1 | 0.27633 (7) | 0.25150 (17) | 0.58702 (14) | 0.0298 (3) | |
| C2 | 0.32957 (9) | 0.1726 (2) | 0.65118 (19) | 0.0232 (4) | |
| H2 | 0.3517 | 0.2334 | 0.7256 | 0.028* | |
| N3 | 0.30119 (8) | 0.03941 (18) | 0.70533 (15) | 0.0240 (3) | |
| C4 | 0.24396 (10) | 0.0998 (2) | 0.7578 (2) | 0.0286 (4) | |
| H4A | 0.2548 | 0.1518 | 0.8441 | 0.034* | |
| H4B | 0.2124 | 0.0210 | 0.7696 | 0.034* | |
| C5 | 0.21970 (10) | 0.2075 (2) | 0.6467 (2) | 0.0275 (4) | |
| H5 | 0.1901 | 0.1541 | 0.5785 | 0.033* | |
| C6 | 0.37483 (9) | 0.1367 (2) | 0.54907 (18) | 0.0226 (4) | |
| C7 | 0.42805 (9) | 0.2251 (2) | 0.53991 (18) | 0.0235 (4) | |
| H7 | 0.4364 | 0.3066 | 0.5991 | 0.028* | |
| C8 | 0.46904 (9) | 0.1942 (2) | 0.44404 (19) | 0.0229 (4) | |
| C9 | 0.45780 (9) | 0.0753 (2) | 0.35676 (18) | 0.0238 (4) | |
| H9 | 0.4865 | 0.0541 | 0.2925 | 0.029* | |
| C10 | 0.40439 (10) | −0.0118 (2) | 0.36452 (18) | 0.0255 (4) | |
| H10 | 0.3961 | −0.0925 | 0.3043 | 0.031* | |
| C11 | 0.36252 (9) | 0.0175 (2) | 0.45995 (18) | 0.0237 (4) | |
| O11 | 0.31123 (7) | −0.07205 (17) | 0.46493 (15) | 0.0287 (3) | |
| H11 | 0.2980 (17) | −0.053 (4) | 0.536 (4) | 0.050 (9)* | |
| C12 | 0.34457 (10) | −0.0365 (2) | 0.8069 (2) | 0.0295 (4) | |
| H12A | 0.3823 | −0.0707 | 0.7665 | 0.044* | |
| H12B | 0.3228 | −0.1218 | 0.8418 | 0.044* | |
| H12C | 0.3577 | 0.0323 | 0.8803 | 0.044* | |
| C13 | 0.18595 (10) | 0.3429 (2) | 0.6965 (2) | 0.0293 (4) | |
| H13A | 0.1502 | 0.3093 | 0.7453 | 0.035* | |
| H13B | 0.2162 | 0.3982 | 0.7606 | 0.035* | |
| C14 | 0.16029 (10) | 0.4466 (2) | 0.5851 (2) | 0.0288 (4) | |
| C15 | 0.19383 (11) | 0.5761 (2) | 0.5574 (2) | 0.0301 (4) | |
| C16 | 0.16792 (12) | 0.6723 (3) | 0.4563 (2) | 0.0361 (5) | |
| H16 | 0.1904 | 0.7603 | 0.4389 | 0.043* | |
| C17 | 0.11055 (12) | 0.6426 (3) | 0.3812 (3) | 0.0430 (6) | |
| C18 | 0.07858 (11) | 0.5135 (4) | 0.4079 (3) | 0.0452 (6) | |
| H18 | 0.0393 | 0.4915 | 0.3564 | 0.054* | |
| C19 | 0.10236 (10) | 0.4145 (3) | 0.5084 (2) | 0.0365 (5) | |
| C20 | 0.25709 (13) | 0.6141 (3) | 0.6335 (2) | 0.0393 (5) | |
| H20A | 0.2512 | 0.6344 | 0.7273 | 0.059* | |
| H20B | 0.2748 | 0.7021 | 0.5938 | 0.059* | |
| H20C | 0.2865 | 0.5304 | 0.6291 | 0.059* | |
| C21 | 0.08362 (15) | 0.7492 (5) | 0.2732 (3) | 0.0650 (10) | |
| H21A | 0.0776 | 0.8468 | 0.3131 | 0.097* | |
| H21B | 0.0425 | 0.7119 | 0.2318 | 0.097* | |
| H21C | 0.1133 | 0.7581 | 0.2050 | 0.097* | |
| C22 | 0.06445 (12) | 0.2765 (4) | 0.5315 (3) | 0.0523 (7) | |
| H22A | 0.0859 | 0.1897 | 0.4985 | 0.079* | |
| H22B | 0.0217 | 0.2853 | 0.4835 | 0.079* | |
| H22C | 0.0611 | 0.2651 | 0.6276 | 0.079* |
| Br1 | 0.02612 (13) | 0.02966 (14) | 0.02922 (14) | −0.00322 (7) | 0.00584 (9) | 0.00477 (7) |
| O1 | 0.0269 (7) | 0.0344 (8) | 0.0296 (7) | 0.0054 (6) | 0.0103 (6) | 0.0108 (6) |
| C2 | 0.0242 (9) | 0.0241 (9) | 0.0216 (8) | −0.0010 (7) | 0.0035 (7) | 0.0011 (7) |
| N3 | 0.0258 (8) | 0.0261 (8) | 0.0201 (7) | −0.0015 (6) | 0.0024 (6) | 0.0029 (6) |
| C4 | 0.0291 (9) | 0.0332 (10) | 0.0245 (9) | −0.0019 (8) | 0.0076 (7) | 0.0037 (8) |
| C5 | 0.0270 (10) | 0.0315 (10) | 0.0249 (9) | −0.0003 (8) | 0.0068 (7) | 0.0021 (8) |
| C6 | 0.0254 (9) | 0.0250 (9) | 0.0173 (8) | 0.0018 (7) | 0.0018 (6) | 0.0021 (7) |
| C7 | 0.0269 (9) | 0.0231 (8) | 0.0201 (8) | 0.0005 (7) | 0.0007 (7) | 0.0015 (7) |
| C8 | 0.0223 (9) | 0.0250 (9) | 0.0212 (9) | −0.0002 (7) | 0.0014 (7) | 0.0040 (7) |
| C9 | 0.0257 (9) | 0.0273 (9) | 0.0183 (8) | 0.0048 (7) | 0.0018 (6) | 0.0014 (7) |
| C10 | 0.0296 (9) | 0.0266 (9) | 0.0197 (8) | 0.0039 (8) | 0.0005 (7) | −0.0025 (7) |
| C11 | 0.0260 (9) | 0.0238 (9) | 0.0209 (8) | −0.0015 (7) | 0.0002 (7) | 0.0039 (7) |
| O11 | 0.0297 (7) | 0.0317 (8) | 0.0249 (7) | −0.0075 (6) | 0.0040 (6) | −0.0043 (6) |
| C12 | 0.0347 (10) | 0.0290 (10) | 0.0239 (9) | 0.0027 (8) | −0.0009 (8) | 0.0043 (8) |
| C13 | 0.0312 (10) | 0.0322 (10) | 0.0260 (10) | 0.0005 (8) | 0.0093 (8) | 0.0018 (8) |
| C14 | 0.0282 (9) | 0.0335 (10) | 0.0264 (9) | 0.0076 (8) | 0.0109 (7) | 0.0004 (8) |
| C15 | 0.0369 (11) | 0.0319 (10) | 0.0231 (9) | 0.0056 (8) | 0.0102 (8) | −0.0007 (8) |
| C16 | 0.0421 (13) | 0.0376 (12) | 0.0314 (11) | 0.0092 (9) | 0.0167 (10) | 0.0062 (9) |
| C17 | 0.0364 (12) | 0.0587 (15) | 0.0361 (12) | 0.0159 (11) | 0.0142 (10) | 0.0169 (11) |
| C18 | 0.0252 (10) | 0.0668 (17) | 0.0435 (13) | 0.0095 (11) | 0.0032 (9) | 0.0111 (12) |
| C19 | 0.0240 (9) | 0.0471 (13) | 0.0392 (11) | 0.0059 (9) | 0.0072 (8) | 0.0041 (10) |
| C20 | 0.0515 (14) | 0.0358 (12) | 0.0306 (11) | −0.0086 (10) | 0.0039 (10) | −0.0001 (9) |
| C21 | 0.0446 (15) | 0.094 (3) | 0.0574 (17) | 0.0211 (17) | 0.0119 (13) | 0.0422 (19) |
| C22 | 0.0265 (11) | 0.0609 (17) | 0.0689 (18) | −0.0046 (12) | 0.0016 (11) | 0.0095 (15) |
| Br1—C8 | 1.9019 (19) | C12—H12B | 0.9800 |
| O1—C2 | 1.424 (2) | C12—H12C | 0.9800 |
| O1—C5 | 1.448 (2) | C13—C14 | 1.513 (3) |
| C2—N3 | 1.472 (2) | C13—H13A | 0.9900 |
| C2—C6 | 1.509 (3) | C13—H13B | 0.9900 |
| C2—H2 | 1.0000 | C14—C19 | 1.404 (3) |
| N3—C12 | 1.465 (2) | C14—C15 | 1.407 (3) |
| N3—C4 | 1.472 (3) | C15—C16 | 1.401 (3) |
| C4—C5 | 1.525 (3) | C15—C20 | 1.505 (3) |
| C4—H4A | 0.9900 | C16—C17 | 1.382 (4) |
| C4—H4B | 0.9900 | C16—H16 | 0.9500 |
| C5—C13 | 1.524 (3) | C17—C18 | 1.385 (4) |
| C5—H5 | 1.0000 | C17—C21 | 1.513 (4) |
| C6—C7 | 1.388 (3) | C18—C19 | 1.399 (4) |
| C6—C11 | 1.404 (3) | C18—H18 | 0.9500 |
| C7—C8 | 1.389 (3) | C19—C22 | 1.510 (4) |
| C7—H7 | 0.9500 | C20—H20A | 0.9800 |
| C8—C9 | 1.388 (3) | C20—H20B | 0.9800 |
| C9—C10 | 1.383 (3) | C20—H20C | 0.9800 |
| C9—H9 | 0.9500 | C21—H21A | 0.9800 |
| C10—C11 | 1.396 (3) | C21—H21B | 0.9800 |
| C10—H10 | 0.9500 | C21—H21C | 0.9800 |
| C11—O11 | 1.356 (2) | C22—H22A | 0.9800 |
| O11—H11 | 0.81 (4) | C22—H22B | 0.9800 |
| C12—H12A | 0.9800 | C22—H22C | 0.9800 |
| C2—O1—C5 | 108.79 (14) | H12A—C12—H12C | 109.5 |
| O1—C2—N3 | 104.01 (15) | H12B—C12—H12C | 109.5 |
| O1—C2—C6 | 109.02 (15) | C14—C13—C5 | 113.25 (17) |
| N3—C2—C6 | 112.83 (16) | C14—C13—H13A | 108.9 |
| O1—C2—H2 | 110.3 | C5—C13—H13A | 108.9 |
| N3—C2—H2 | 110.3 | C14—C13—H13B | 108.9 |
| C6—C2—H2 | 110.3 | C5—C13—H13B | 108.9 |
| C12—N3—C2 | 112.92 (16) | H13A—C13—H13B | 107.7 |
| C12—N3—C4 | 113.51 (15) | C19—C14—C15 | 119.3 (2) |
| C2—N3—C4 | 102.26 (15) | C19—C14—C13 | 120.0 (2) |
| N3—C4—C5 | 101.41 (15) | C15—C14—C13 | 120.7 (2) |
| N3—C4—H4A | 111.5 | C16—C15—C14 | 119.4 (2) |
| C5—C4—H4A | 111.5 | C16—C15—C20 | 118.9 (2) |
| N3—C4—H4B | 111.5 | C14—C15—C20 | 121.7 (2) |
| C5—C4—H4B | 111.5 | C17—C16—C15 | 121.8 (2) |
| H4A—C4—H4B | 109.3 | C17—C16—H16 | 119.1 |
| O1—C5—C13 | 110.61 (17) | C15—C16—H16 | 119.1 |
| O1—C5—C4 | 104.45 (16) | C16—C17—C18 | 118.2 (2) |
| C13—C5—C4 | 113.71 (17) | C16—C17—C21 | 120.5 (3) |
| O1—C5—H5 | 109.3 | C18—C17—C21 | 121.3 (3) |
| C13—C5—H5 | 109.3 | C17—C18—C19 | 122.1 (2) |
| C4—C5—H5 | 109.3 | C17—C18—H18 | 119.0 |
| C7—C6—C11 | 119.50 (17) | C19—C18—H18 | 119.0 |
| C7—C6—C2 | 119.82 (17) | C18—C19—C14 | 119.2 (2) |
| C11—C6—C2 | 120.64 (17) | C18—C19—C22 | 118.8 (2) |
| C6—C7—C8 | 119.94 (18) | C14—C19—C22 | 122.0 (2) |
| C6—C7—H7 | 120.0 | C15—C20—H20A | 109.5 |
| C8—C7—H7 | 120.0 | C15—C20—H20B | 109.5 |
| C9—C8—C7 | 121.00 (18) | H20A—C20—H20B | 109.5 |
| C9—C8—Br1 | 119.54 (14) | C15—C20—H20C | 109.5 |
| C7—C8—Br1 | 119.46 (15) | H20A—C20—H20C | 109.5 |
| C10—C9—C8 | 119.20 (17) | H20B—C20—H20C | 109.5 |
| C10—C9—H9 | 120.4 | C17—C21—H21A | 109.5 |
| C8—C9—H9 | 120.4 | C17—C21—H21B | 109.5 |
| C9—C10—C11 | 120.70 (18) | H21A—C21—H21B | 109.5 |
| C9—C10—H10 | 119.7 | C17—C21—H21C | 109.5 |
| C11—C10—H10 | 119.7 | H21A—C21—H21C | 109.5 |
| O11—C11—C10 | 118.61 (18) | H21B—C21—H21C | 109.5 |
| O11—C11—C6 | 121.74 (17) | C19—C22—H22A | 109.5 |
| C10—C11—C6 | 119.65 (18) | C19—C22—H22B | 109.5 |
| C11—O11—H11 | 105 (2) | H22A—C22—H22B | 109.5 |
| N3—C12—H12A | 109.5 | C19—C22—H22C | 109.5 |
| N3—C12—H12B | 109.5 | H22A—C22—H22C | 109.5 |
| H12A—C12—H12B | 109.5 | H22B—C22—H22C | 109.5 |
| N3—C12—H12C | 109.5 | ||
| C5—O1—C2—N3 | 23.8 (2) | C7—C6—C11—O11 | 179.93 (17) |
| C5—O1—C2—C6 | 144.39 (16) | C2—C6—C11—O11 | −2.2 (3) |
| O1—C2—N3—C12 | −163.70 (15) | C7—C6—C11—C10 | 0.9 (3) |
| C6—C2—N3—C12 | 78.3 (2) | C2—C6—C11—C10 | 178.71 (17) |
| O1—C2—N3—C4 | −41.36 (18) | O1—C5—C13—C14 | 64.6 (2) |
| C6—C2—N3—C4 | −159.35 (16) | C4—C5—C13—C14 | −178.21 (18) |
| C12—N3—C4—C5 | 163.78 (17) | C5—C13—C14—C19 | 80.4 (2) |
| C2—N3—C4—C5 | 41.84 (18) | C5—C13—C14—C15 | −99.8 (2) |
| C2—O1—C5—C13 | 125.28 (18) | C19—C14—C15—C16 | 1.7 (3) |
| C2—O1—C5—C4 | 2.6 (2) | C13—C14—C15—C16 | −178.05 (18) |
| N3—C4—C5—O1 | −27.6 (2) | C19—C14—C15—C20 | −178.2 (2) |
| N3—C4—C5—C13 | −148.32 (17) | C13—C14—C15—C20 | 2.1 (3) |
| O1—C2—C6—C7 | 98.9 (2) | C14—C15—C16—C17 | −1.0 (3) |
| N3—C2—C6—C7 | −146.13 (17) | C20—C15—C16—C17 | 178.9 (2) |
| O1—C2—C6—C11 | −79.0 (2) | C15—C16—C17—C18 | −0.1 (4) |
| N3—C2—C6—C11 | 36.0 (2) | C15—C16—C17—C21 | 179.6 (2) |
| C11—C6—C7—C8 | −0.7 (3) | C16—C17—C18—C19 | 0.5 (4) |
| C2—C6—C7—C8 | −178.59 (17) | C21—C17—C18—C19 | −179.2 (3) |
| C6—C7—C8—C9 | −0.2 (3) | C17—C18—C19—C14 | 0.2 (4) |
| C6—C7—C8—Br1 | −179.44 (14) | C17—C18—C19—C22 | 179.8 (3) |
| C7—C8—C9—C10 | 1.0 (3) | C15—C14—C19—C18 | −1.3 (3) |
| Br1—C8—C9—C10 | −179.76 (14) | C13—C14—C19—C18 | 178.4 (2) |
| C8—C9—C10—C11 | −0.9 (3) | C15—C14—C19—C22 | 179.1 (2) |
| C9—C10—C11—O11 | −179.15 (17) | C13—C14—C19—C22 | −1.1 (3) |
| C9—C10—C11—C6 | −0.1 (3) |
| H··· | ||||
| O11—H11···N3 | 0.81 (4) | 1.89 (4) | 2.644 (2) | 155 (3) |
| C4—H4 | 0.99 | 2.58 | 3.564 (2) | 171 |
| C20—H20 | 0.98 | 2.57 | 3.548 (3) | 173 |
| C20—H20 | 0.98 | 2.55 | 3.332 (3) | 136 |
| C2—H2··· | 1.00 | 2.91 | 3.908 (2) | 176 |
| C4—H4 | 0.99 | 2.88 | 3.622 (2) | 132 |
| C21—H21 | 0.98 | 2.93 | 3.723 (4) | 138 |