Literature DB >> 21579707

(4-Benzyl-2-oxo-1,3-oxazolidin-5-yl)methyl methane-sulfonate.

Wilson Cunico, Claudia R B Gomes, Edward R T Tiekink, Walcimar T Vellasco Junior, James L Wardell, Solange M S V Wardell.   

Abstract

The title compound, C(12)H(15)NO(5)S, features an approximately planar five-membered oxazolidin ring (r.m.s. deviation = 0.045 Å) with the peripheral benzyl and methyl methane-sulfonate residues lying to either side of the plane. In the crystal, N-H⋯O hydrogen bonds, involving one of the sulfur-bound oxo groups as acceptor, lead to the formation of supra-molecular chains along the b axis. These chains are reinforced by C-H⋯O contacts with the carbonyl O atom accepting three such inter-actions. The structure was refined as a racemic twin, with the major component being present 89% of the time.

Entities:  

Year:  2010        PMID: 21579707      PMCID: PMC2979937          DOI: 10.1107/S1600536809055020

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of 1,3-oxazolidin-2-ones as chiral auxiliaries in organic synthesis, see: Evans et al. (1981 ▶); Ager et al. (1996 ▶, 1997 ▶); Hinter­mann & Seebach (1998 ▶). For their biological activity, see: Poce et al. (2008 ▶); Brickner et al. (2008 ▶); Means et al. (2006 ▶); Kaiser et al. (2007 ▶); Clemmet & Markham (2000 ▶); Ebner et al. (2008 ▶); Negwer & Scharnow (2007 ▶); Mai et al. (2003 ▶). For background to their syntheses, see: Ochoa-Terán & Rivero (2008 ▶); Zappia et al. (2007 ▶).

Experimental

Crystal data

C12H15NO5S M = 285.31 Monoclinic, a = 8.7332 (5) Å b = 5.8757 (3) Å c = 12.9650 (7) Å β = 103.317 (3)° V = 647.39 (6) Å3 Z = 2 Mo Kα radiation μ = 0.27 mm−1 T = 120 K 0.26 × 0.08 × 0.02 mm

Data collection

Nonius KappaCCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.700, T max = 1.000 6748 measured reflections 2587 independent reflections 2266 reflections with I > 2σ(I) R int = 0.059

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.123 S = 1.11 2587 reflections 177 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.36 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809055020/hb5289sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809055020/hb5289Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H15NO5SF(000) = 300
Mr = 285.31Dx = 1.464 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 7909 reflections
a = 8.7332 (5) Åθ = 2.9–27.5°
b = 5.8757 (3) ŵ = 0.27 mm1
c = 12.9650 (7) ÅT = 120 K
β = 103.317 (3)°Plate, colourless
V = 647.39 (6) Å30.26 × 0.08 × 0.02 mm
Z = 2
Nonius KappaCCD area-detector diffractometer2587 independent reflections
Radiation source: Enraf Nonius FR591 rotating anode2266 reflections with I > 2σ(I)
10 cm confocal mirrorsRint = 0.059
Detector resolution: 9.091 pixels mm-1θmax = 26.5°, θmin = 3.2°
φ and ω scansh = −8→10
Absorption correction: multi-scan (SADABS; Sheldrick, 2007)k = −7→7
Tmin = 0.700, Tmax = 1.000l = −16→14
6748 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.057Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.123H atoms treated by a mixture of independent and constrained refinement
S = 1.11w = 1/[σ2(Fo2) + 1.5106P] where P = (Fo2 + 2Fc2)/3
2587 reflections(Δ/σ)max < 0.001
177 parametersΔρmax = 0.33 e Å3
2 restraintsΔρmin = −0.36 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.44667 (11)0.00547 (18)0.67229 (8)0.0215 (2)
O10.6105 (3)0.0327 (6)0.7186 (2)0.0284 (7)
O20.3629 (4)−0.1750 (5)0.7089 (2)0.0283 (8)
O30.4391 (3)−0.0275 (5)0.5504 (2)0.0210 (7)
O40.2132 (3)0.2865 (5)0.4405 (2)0.0222 (7)
O50.0104 (3)0.5267 (5)0.4294 (2)0.0233 (6)
N1−0.0074 (4)0.2084 (6)0.3228 (3)0.0223 (8)
H1N−0.1104 (13)0.208 (8)0.305 (4)0.027*
C10.3493 (6)0.2628 (8)0.6800 (4)0.0278 (11)
H1A0.36250.30630.75450.042*
H1B0.23700.24480.64730.042*
H1C0.39370.38150.64250.042*
C20.2907 (5)−0.1031 (7)0.4793 (3)0.0207 (9)
H2A0.2078−0.11930.51960.025*
H2B0.3058−0.25240.44780.025*
C30.2425 (5)0.0726 (7)0.3934 (3)0.0208 (9)
H30.32800.09220.35440.025*
C40.0626 (5)0.3548 (7)0.3990 (3)0.0209 (9)
C50.0868 (4)0.0065 (9)0.3147 (3)0.0198 (8)
H50.0396−0.13040.34100.024*
C60.1067 (5)−0.0349 (8)0.2020 (3)0.0246 (10)
H6A0.15060.10360.17630.030*
H6B0.1824−0.16070.20300.030*
C7−0.0472 (5)−0.0941 (8)0.1270 (3)0.0229 (9)
C8−0.1231 (5)0.0627 (8)0.0526 (3)0.0289 (11)
H8−0.07730.20830.04920.035*
C9−0.2646 (5)0.0105 (11)−0.0168 (3)0.0333 (10)
H9−0.31460.1199−0.06740.040*
C10−0.3333 (6)−0.1999 (9)−0.0126 (4)0.0326 (11)
H10−0.4308−0.2360−0.05970.039*
C11−0.2577 (6)−0.3580 (8)0.0615 (4)0.0301 (11)
H11−0.3037−0.50330.06530.036*
C12−0.1161 (5)−0.3054 (8)0.1297 (4)0.0267 (10)
H12−0.0651−0.41600.17920.032*
U11U22U33U12U13U23
S10.0215 (5)0.0219 (5)0.0206 (5)−0.0014 (5)0.0037 (4)−0.0012 (5)
O10.0221 (14)0.036 (2)0.0237 (15)−0.0046 (16)−0.0008 (11)−0.0039 (15)
O20.0333 (19)0.0263 (18)0.0235 (17)−0.0045 (15)0.0030 (14)0.0029 (14)
O30.0161 (13)0.0277 (18)0.0178 (13)−0.0015 (13)0.0007 (10)−0.0043 (13)
O40.0176 (15)0.0207 (15)0.0260 (16)0.0016 (12)0.0001 (12)−0.0014 (13)
O50.0240 (14)0.0174 (16)0.0294 (15)0.0013 (14)0.0082 (12)0.0000 (14)
N10.0172 (18)0.026 (2)0.024 (2)0.0008 (15)0.0046 (15)−0.0014 (15)
C10.032 (3)0.021 (2)0.031 (3)0.000 (2)0.009 (2)−0.005 (2)
C20.020 (2)0.022 (2)0.019 (2)0.0003 (17)0.0018 (17)−0.0022 (17)
C30.020 (2)0.014 (2)0.028 (2)−0.0019 (15)0.0052 (17)−0.0025 (16)
C40.022 (2)0.021 (2)0.021 (2)−0.0033 (18)0.0066 (17)0.0057 (17)
C50.0181 (17)0.0195 (19)0.0217 (19)0.001 (2)0.0041 (14)0.006 (2)
C60.022 (2)0.026 (3)0.025 (2)0.0009 (18)0.0060 (17)0.0007 (18)
C70.027 (2)0.026 (2)0.017 (2)0.0023 (18)0.0080 (18)−0.0022 (17)
C80.035 (2)0.029 (3)0.024 (2)−0.001 (2)0.0093 (19)0.0006 (18)
C90.041 (2)0.035 (3)0.020 (2)0.004 (3)0.0000 (18)−0.003 (3)
C100.027 (2)0.043 (3)0.027 (3)0.003 (2)0.003 (2)−0.007 (2)
C110.033 (3)0.024 (3)0.034 (3)−0.005 (2)0.008 (2)−0.003 (2)
C120.029 (2)0.028 (2)0.022 (2)−0.001 (2)0.0024 (18)0.0016 (19)
S1—O11.427 (3)C3—H31.0000
S1—O21.430 (3)C5—C61.529 (5)
S1—O31.578 (3)C5—H51.0000
S1—C11.749 (5)C6—C71.507 (6)
O3—C21.475 (5)C6—H6A0.9900
O4—C41.362 (5)C6—H6B0.9900
O4—C31.445 (5)C7—C121.383 (6)
O5—C41.210 (5)C7—C81.387 (6)
N1—C41.346 (6)C8—C91.385 (6)
N1—C51.462 (6)C8—H80.9500
N1—H1N0.875 (10)C9—C101.381 (8)
C1—H1A0.9800C9—H90.9500
C1—H1B0.9800C10—C111.390 (7)
C1—H1C0.9800C10—H100.9500
C2—C31.506 (5)C11—C121.379 (7)
C2—H2A0.9900C11—H110.9500
C2—H2B0.9900C12—H120.9500
C3—C51.550 (5)
O1—S1—O2118.9 (2)N1—C4—O4109.6 (4)
O1—S1—O3103.99 (16)N1—C5—C6112.8 (3)
O2—S1—O3109.53 (18)N1—C5—C399.9 (4)
O1—S1—C1109.4 (2)C6—C5—C3113.2 (3)
O2—S1—C1109.2 (2)N1—C5—H5110.2
O3—S1—C1104.8 (2)C6—C5—H5110.2
C2—O3—S1119.4 (2)C3—C5—H5110.2
C4—O4—C3109.8 (3)C7—C6—C5111.9 (3)
C4—N1—C5113.8 (4)C7—C6—H6A109.2
C4—N1—H1N117 (3)C5—C6—H6A109.2
C5—N1—H1N123 (3)C7—C6—H6B109.2
S1—C1—H1A109.5C5—C6—H6B109.2
S1—C1—H1B109.5H6A—C6—H6B107.9
H1A—C1—H1B109.5C12—C7—C8118.2 (4)
S1—C1—H1C109.5C12—C7—C6121.3 (4)
H1A—C1—H1C109.5C8—C7—C6120.5 (4)
H1B—C1—H1C109.5C9—C8—C7121.1 (5)
O3—C2—C3108.1 (3)C9—C8—H8119.4
O3—C2—H2A110.1C7—C8—H8119.4
C3—C2—H2A110.1C10—C9—C8120.2 (5)
O3—C2—H2B110.1C10—C9—H9119.9
C3—C2—H2B110.1C8—C9—H9119.9
H2A—C2—H2B108.4C9—C10—C11118.9 (4)
O4—C3—C2109.3 (3)C9—C10—H10120.5
O4—C3—C5106.4 (3)C11—C10—H10120.5
C2—C3—C5111.6 (3)C12—C11—C10120.4 (5)
O4—C3—H3109.8C12—C11—H11119.8
C2—C3—H3109.8C10—C11—H11119.8
C5—C3—H3109.8C11—C12—C7121.1 (4)
O5—C4—N1129.1 (4)C11—C12—H12119.5
O5—C4—O4121.3 (4)C7—C12—H12119.5
O1—S1—O3—C2168.8 (3)C2—C3—C5—N1123.5 (4)
O2—S1—O3—C240.7 (4)O4—C3—C5—C6124.6 (4)
C1—S1—O3—C2−76.4 (3)C2—C3—C5—C6−116.3 (4)
S1—O3—C2—C3122.4 (3)N1—C5—C6—C7−66.3 (5)
C4—O4—C3—C2−121.3 (4)C3—C5—C6—C7−178.9 (4)
C4—O4—C3—C5−0.7 (4)C5—C6—C7—C12−73.9 (5)
O3—C2—C3—O4−62.6 (4)C5—C6—C7—C8106.5 (5)
O3—C2—C3—C5180.0 (3)C12—C7—C8—C90.4 (6)
C5—N1—C4—O5−174.4 (4)C6—C7—C8—C9−180.0 (4)
C5—N1—C4—O47.3 (5)C7—C8—C9—C100.3 (7)
C3—O4—C4—O5177.7 (4)C8—C9—C10—C11−0.5 (7)
C3—O4—C4—N1−3.8 (5)C9—C10—C11—C12−0.1 (7)
C4—N1—C5—C6−127.6 (4)C10—C11—C12—C70.9 (7)
C4—N1—C5—C3−7.1 (4)C8—C7—C12—C11−1.0 (7)
O4—C3—C5—N14.4 (4)C6—C7—C12—C11179.4 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O2i0.88 (2)2.28 (2)3.113 (5)160 (4)
C1—H1B···O5ii0.982.513.428 (6)155
C2—H2A···O5ii0.992.323.214 (5)150
C5—H5···O5iii1.002.363.326 (6)162
C6—H6B···O1iv0.992.593.528 (6)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O2i0.88 (2)2.28 (2)3.113 (5)160 (4)
C1—H1B⋯O5ii0.982.513.428 (6)155
C2—H2A⋯O5ii0.992.323.214 (5)150
C5—H5⋯O5iii1.002.363.326 (6)162
C6—H6B⋯O1iv0.992.593.528 (6)158

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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1.  1,2-Amino Alcohols and Their Heterocyclic Derivatives as Chiral Auxiliaries in Asymmetric Synthesis.

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Authors:  George M Sheldrick
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Review 3.  Linezolid.

Authors:  D Clemett; A Markham
Journal:  Drugs       Date:  2000-04       Impact factor: 9.546

Review 4.  Synthesis and biological evaluation of enantiomerically pure pyrrolyl-oxazolidinones as a new class of potent and selective monoamine oxidase type A inhibitors.

Authors:  A Mai; Marino Artico; M Esposito; R Ragno; G Sbardella; S Massa
Journal:  Farmaco       Date:  2003-03

5.  Structure-activity studies of oxazolidinone analogs as RNA-binding agents.

Authors:  John Means; Steven Katz; Abhijit Nayek; Rajaneesh Anupam; Jennifer V Hines; Stephen C Bergmeier
Journal:  Bioorg Med Chem Lett       Date:  2006-04-05       Impact factor: 2.823

6.  Synthesis of novel oxazolidinone antimicrobial agents.

Authors:  David C Ebner; Jeffrey C Culhane; Tyler N Winkelman; Mitchell D Haustein; Jayna L Ditty; J Thomas Ippoliti
Journal:  Bioorg Med Chem       Date:  2007-11-19       Impact factor: 3.641

Review 7.  Linezolid (ZYVOX), the first member of a completely new class of antibacterial agents for treatment of serious gram-positive infections.

Authors:  Steven J Brickner; Michael R Barbachyn; Douglas K Hutchinson; Peter R Manninen
Journal:  J Med Chem       Date:  2008-03-14       Impact factor: 7.446

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