Literature DB >> 35851423

Genome-based reclassification of Actinopolyspora righensis Meklat et al. 2013 as a later heterotypic synonym of Actinopolyspora lacussalsi Guan et al. 2013 and description of Actinopolyspora lacussalsi subsp. lacussalsi subsp. nov. and Actinopolyspora lacussalsi subsp. righensis subsp. nov.

Rafika Saker1, Noureddine Bouras2,3, Atika Meklat1, Michael D Holtz4, Hans-Peter Klenk5, Imen Nouioui6.   

Abstract

A genome led phylophasic study was designed to determine the taxonomic status of a strain, DSM 45956, recovered from a Saharan desert soil. A wealth of taxonomic data, including average nucleotide identity and DNA:DNA hybridization (DDH) values, showed that the isolate and the type strains of Actinopolyspora lacussalsi and Actinopolyspora righensis belong to the same species. Consequently, it is proposed that A. righensis is a heterotypic synonym of A. lacussalsi. Similarly, DDH values and associated phenotypic data show that A. lacussalsi contains two subspecies, A. lacussalsi subsp. lacussalsi and A. lacussalsi subsp. righensis which includes isolate DSM 45956.
© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  Actinopolyspora lacussalsi; Actinopolyspora righensis; Genome analysis; Heterotypic synonym

Mesh:

Substances:

Year:  2022        PMID: 35851423     DOI: 10.1007/s00203-022-03120-4

Source DB:  PubMed          Journal:  Arch Microbiol        ISSN: 0302-8933            Impact factor:   2.667


  32 in total

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Journal:  Int J Syst Bacteriol       Date:  1992-01

2.  CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP.

Authors:  Joseph Felsenstein
Journal:  Evolution       Date:  1985-07       Impact factor: 3.694

3.  Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes.

Authors:  Jongsik Chun; Aharon Oren; Antonio Ventosa; Henrik Christensen; David Ruiz Arahal; Milton S da Costa; Alejandro P Rooney; Hana Yi; Xue-Wei Xu; Sofie De Meyer; Martha E Trujillo
Journal:  Int J Syst Evol Microbiol       Date:  2018-01       Impact factor: 2.747

4.  Evolutionary trees from DNA sequences: a maximum likelihood approach.

Authors:  J Felsenstein
Journal:  J Mol Evol       Date:  1981       Impact factor: 2.395

5.  Isolation and characterization of Actinopolyspora halophila, gen. et sp. nov., an extremely halophilic actinomycete.

Authors:  M B Gochnauer; G G Leppard; P Komaratat; M Kates; T Novitsky; D J Kushner
Journal:  Can J Microbiol       Date:  1975-10       Impact factor: 2.419

6.  Nocardiopsis kunsanensis sp. nov., a moderately halophilic actinomycete isolated from a saltern.

Authors:  J Chun; K S Bae; E Y Moon; S O Jung; H K Lee; S J Kim
Journal:  Int J Syst Evol Microbiol       Date:  2000-09       Impact factor: 2.747

7.  Genome mining of biosynthetic gene clusters intended for secondary metabolites conservation in actinobacteria.

Authors:  Karthick Raja Arulprakasam; Dhanasekaran Dharumadurai
Journal:  Microb Pathog       Date:  2021-10-15       Impact factor: 3.738

8.  Actinopolyspora salinaria sp. nov., a halophilic actinomycete isolated from solar saltern soil.

Authors:  Kannika Duangmal; Paweena Suksaard; Wasu Pathom-Aree; Ratchanee Mingma; Atsuko Matsumoto; Yoko Takahashi
Journal:  Int J Syst Evol Microbiol       Date:  2016-01-26       Impact factor: 2.747

9.  antiSMASH 6.0: improving cluster detection and comparison capabilities.

Authors:  Kai Blin; Simon Shaw; Alexander M Kloosterman; Zach Charlop-Powers; Gilles P van Wezel; Marnix H Medema; Tilmann Weber
Journal:  Nucleic Acids Res       Date:  2021-07-02       Impact factor: 16.971

10.  LINE-1 Methylation Status Correlates Significantly to Post-Therapeutic Recurrence in Stage III Colon Cancer Patients Receiving FOLFOX-4 Adjuvant Chemotherapy.

Authors:  Yun-Ting Lou; Chao-Wen Chen; Yun-Ching Fan; Wei-Chiao Chang; Chien-Yu Lu; I-Chen Wu; Wen-Hung Hsu; Ching-Wen Huang; Jaw-Yuan Wang
Journal:  PLoS One       Date:  2015-04-28       Impact factor: 3.240

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