Literature DB >> 31760613

Paraflavitalea soli gen. nov., sp. nov., isolated from greenhouse soil.

Jun Heo1, Hang-Yeon Weon1, Hayoung Cho1, Seung-Beom Hong1, Jeong-Seon Kim1, Soo-Jin Kim2, Soon-Wo Kwon1.   

Abstract

A bacterial strain designated 5GH32-13T was isolated from greenhouse soil in Yongin-city, Republic of Korea. Cells were Gram-stain-negative, strictly aerobic, motile rods of two different shapes. The strain was catalase-positive and oxidasenegative. Flexirubin-like pigments were not detected. β-Carotene was produced. The strain grew in the range of 10-37°C (optimum of 28-30°C) and pH 6-8 (optimum of pH 7) and tolerated up to 1% (w/v) NaCl (optimum of 0%). According to the 16S rRNA gene sequence comparison, strain 5GH32-13T shared a sequence similarity of less than 96.0% with all validly named taxa, having the highest sequence similarity with Pseudoflavitalea soli KIS20-3T (95.8%), Pseudoflavitalea rhizosphaerae T16R-265T (95.4%), Flavitalea gansuensis JCN-23T (95.3%), Pseudobacter ginsenosidimutans Gsoil 221T (95.3%), and Flavitalea populi HY-50RT (95.2%). A phylogenetic tree showed that strain 5GH32-13T was not grouped consistently into any specific genus. Its only polyamine was homospermidine, and its major fatty acids (> 10% of total fatty acids) were iso-C15:0, iso-C17:0 3-OH, and iso-C15:1 G. The strain's only respiratory quinone was MK-7, and its polar lipids were phosphatidylethanolamine, one unidentified phospholipid, six unidentified aminolipids and four unidentified lipids. Its DNA G + C content was 47.5 mol%. The results from chemotaxonomic, phenotypic and phylogenetic analyses indicated that strain 5GH32-13T represents a novel species of a novel genus of the family Chitinophagaceae, and the name Paraflavitalea soli gen. nov., sp. nov. is proposed. The type strain is 5GH32-13T (= KACC 17331T = JCM 33061T).

Entities:  

Keywords:  Chitinophagaceae; Paraflavitalea soli; new genus; new species

Mesh:

Substances:

Year:  2019        PMID: 31760613     DOI: 10.1007/s12275-020-9236-y

Source DB:  PubMed          Journal:  J Microbiol        ISSN: 1225-8873            Impact factor:   3.422


  21 in total

1.  MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.

Authors:  Koichiro Tamura; Glen Stecher; Daniel Peterson; Alan Filipski; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2013-10-16       Impact factor: 16.240

2.  Flavitalea flava sp. nov., a bacterium isolated from a soil sample, and emended description of the genus Flavitalea.

Authors:  Min-Jiao Liu; Chun-Zhi Jin; Ainijiang Ersiman; Dong-Jin Park; Chang-Jin Kim
Journal:  Antonie Van Leeuwenhoek       Date:  2018-09-01       Impact factor: 2.271

3.  Evolutionary trees from DNA sequences: a maximum likelihood approach.

Authors:  J Felsenstein
Journal:  J Mol Evol       Date:  1981       Impact factor: 2.395

Review 4.  Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences.

Authors:  Pablo Yarza; Pelin Yilmaz; Elmar Pruesse; Frank Oliver Glöckner; Wolfgang Ludwig; Karl-Heinz Schleifer; William B Whitman; Jean Euzéby; Rudolf Amann; Ramon Rosselló-Móra
Journal:  Nat Rev Microbiol       Date:  2014-09       Impact factor: 60.633

5.  Flaviramulus ichthyoenteri sp. nov., an N-acylhomoserine lactone-degrading bacterium isolated from the intestine of a flounder (Paralichthys olivaceus), and emended descriptions of the genus Flaviramulus and Flaviramulus basaltis.

Authors:  Yunhui Zhang; Kaihao Tang; Xiaochong Shi; Xiao-Hua Zhang
Journal:  Int J Syst Evol Microbiol       Date:  2013-07-16       Impact factor: 2.747

6.  Flavitalea populi gen. nov., sp. nov., isolated from soil of a Euphrates poplar (Populus euphratica) forest.

Authors:  Yang Wang; Feng Cai; Yali Tang; Jun Dai; Huan Qi; Erkin Rahman; Fang Peng; Chengxiang Fang
Journal:  Int J Syst Evol Microbiol       Date:  2010-07-23       Impact factor: 2.747

7.  Genome sequence-based species delimitation with confidence intervals and improved distance functions.

Authors:  Jan P Meier-Kolthoff; Alexander F Auch; Hans-Peter Klenk; Markus Göker
Journal:  BMC Bioinformatics       Date:  2013-02-21       Impact factor: 3.169

8.  Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies.

Authors:  Seok-Hwan Yoon; Sung-Min Ha; Soonjae Kwon; Jeongmin Lim; Yeseul Kim; Hyungseok Seo; Jongsik Chun
Journal:  Int J Syst Evol Microbiol       Date:  2017-05-30       Impact factor: 2.747

9.  Flavitalea antarctica sp. nov., isolated from Fildes Peninsula, Antarctica.

Authors:  Ziyan Wei; Yao Huang; Wangmu Danzeng; Myong Chol Kim; Guoxin Zhu; Yumin Zhang; Zuobing Liu; Fang Peng
Journal:  Int J Syst Evol Microbiol       Date:  2017-07-19       Impact factor: 2.747

10.  NCBI prokaryotic genome annotation pipeline.

Authors:  Tatiana Tatusova; Michael DiCuccio; Azat Badretdin; Vyacheslav Chetvernin; Eric P Nawrocki; Leonid Zaslavsky; Alexandre Lomsadze; Kim D Pruitt; Mark Borodovsky; James Ostell
Journal:  Nucleic Acids Res       Date:  2016-06-24       Impact factor: 16.971

View more
  1 in total

1.  Longitalea arenae gen. nov., sp. nov. and Longitalea luteola sp. nov., two new members of the family Chitinophagaceae isolated from desert soil.

Authors:  Shuai Li; Lei Dong; Jia-Rui Han; Guo-Yuan Shi; Chun-Yan Lu; Lu Xu; Wen-Hui Lian; Dalal Hussien M Alkhalifah; Wael N Hozzein; Wen-Jun Li
Journal:  Arch Microbiol       Date:  2022-07-18       Impact factor: 2.667

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.