Literature DB >> 22202731

Exploring long non-coding RNAs through sequencing.

Sophie R Atkinson1, Samuel Marguerat, Jürg Bähler.   

Abstract

Long non-coding RNAs (lncRNAs) are emerging as an important class of regulatory transcripts that are implicated in a variety of biological functions. RNA-sequencing, along with other next-generation sequencing-based approaches, enables their study on a genome-wide scale, at maximal resolution, and across multiple conditions. This review discusses how sequencing-based studies are providing global insights into lncRNA transcription, post-transcriptional processing, expression regulation and sites of function. The next few years will deepen our insight into the overall contribution of lncRNAs to genome function and to the information flow from genotype to phenotype.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 22202731     DOI: 10.1016/j.semcdb.2011.12.003

Source DB:  PubMed          Journal:  Semin Cell Dev Biol        ISSN: 1084-9521            Impact factor:   7.727


  42 in total

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Authors:  Renáta Tóth; Jozef Nosek; Héctor M Mora-Montes; Toni Gabaldon; Joseph M Bliss; Joshua D Nosanchuk; Siobhán A Turner; Geraldine Butler; Csaba Vágvölgyi; Attila Gácser
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Review 3.  Analysis of the transcriptome in molecular epidemiology studies.

Authors:  Cliona M McHale; Luoping Zhang; Reuben Thomas; Martyn T Smith
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4.  Identification of novel long noncoding RNAs underlying vertebrate cardiovascular development.

Authors:  Leo Kurian; Aitor Aguirre; Ignacio Sancho-Martinez; Christopher Benner; Tomoaki Hishida; Thai B Nguyen; Pradeep Reddy; Emmanuel Nivet; Marie N Krause; David A Nelles; Concepcion Rodriguez Esteban; Josep M Campistol; Gene W Yeo; Juan Carlos Izpisua Belmonte
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5.  Zbtb7b engages the long noncoding RNA Blnc1 to drive brown and beige fat development and thermogenesis.

Authors:  Siming Li; Lin Mi; Lei Yu; Qi Yu; Tongyu Liu; Guo-Xiao Wang; Xu-Yun Zhao; Jun Wu; Jiandie D Lin
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-07       Impact factor: 11.205

6.  The Long Noncoding RNA Landscape of the Ischemic Human Left Ventricle.

Authors:  Louis A Saddic; Martin I Sigurdsson; Tzuu-Wang Chang; Erica Mazaika; Mahyar Heydarpour; Stanton K Shernan; Christine E Seidman; Jon G Seidman; Sary F Aranki; Simon C Body; Jochen D Muehlschlegel
Journal:  Circ Cardiovasc Genet       Date:  2017-01

7.  A long noncoding RNA transcriptional regulatory circuit drives thermogenic adipocyte differentiation.

Authors:  Xu-Yun Zhao; Siming Li; Guo-Xiao Wang; Qi Yu; Jiandie D Lin
Journal:  Mol Cell       Date:  2014-07-04       Impact factor: 17.970

8.  Long non-coding genes implicated in response to stripe rust pathogen stress in wheat (Triticum aestivum L.).

Authors:  Hong Zhang; Xueyan Chen; Changyou Wang; Zhongyang Xu; Yajuan Wang; Xinlun Liu; Zhensheng Kang; Wanquan Ji
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Review 9.  Use of blood-based biomarkers for early diagnosis and surveillance of colorectal cancer.

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Journal:  World J Gastrointest Oncol       Date:  2014-04-15

10.  The lncRNA GATA3-AS1/miR-495-3p/CENPU axis predicts poor prognosis of breast cancer via the PLK1 signaling pathway.

Authors:  Shuangyan Lin; Mingyuan Zhao; Yanbo Lv; Genxiang Mao; Shiping Ding; Fang Peng
Journal:  Aging (Albany NY)       Date:  2021-04-26       Impact factor: 5.682

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