| Literature DB >> 35831903 |
Xiaoli Huang1, Yimin Cheng2, Na Wang3.
Abstract
BACKGROUND: Genetic factors are important risk factors to develop coronary heart disease (CHD). In this study, we mainly explored whether CYP11B1 mutations influence CHD risk among Chinese Han population.Entities:
Keywords: CYP11B1; Coronary heart disease; Gene; Polymorphisms; Susceptibility
Mesh:
Substances:
Year: 2022 PMID: 35831903 PMCID: PMC9281100 DOI: 10.1186/s12920-022-01307-8
Source DB: PubMed Journal: BMC Med Genomics ISSN: 1755-8794 Impact factor: 3.622
Primary characteristics of the cases and controls
| Variants | Case (N = 509) | Control (N = 509) | |
|---|---|---|---|
| Age, years | 62.16 ± 10.30 | 61.14 ± 9.02 | 0.094a |
| > 60 (N, %)(N, %) | 283 (55.6%) | 284 (55.8%) | |
| ≤ 60 (N, %) | 226 (44.4%) | 225 (44.2%) | |
| Gender | 1.000b | ||
| Male (N, %) | 335 (65.8%) | 335 (65.8%) | |
| Female (N, %) | 174 (34.2%) | 174 (34.2%) | |
| TG (mmol/L) | 1.62 ± 1.00 | 1.84 ± 1.46 | |
| TC (mmol/L) | 4.08 ± 1.08 | 4.76 ± 0.91 | |
| LDL (mmol/L) | 3.83 ± 1.92 | 2.60 ± 0.73 | 0.157 a |
| HDL (mmol/L) | 1.12 ± 0.26 | 1.17 ± 0.36 | |
| UA (μ mol/L) | 300.90 ± 92.21 | 320.41 ± 79.40 | |
| Urea | 5.37 ± 2.14 | 5.15 ± 1.31 | 0.056a |
| RBC | 4.82 ± 0.46 | 4.22 ± 0.97 | |
| WBC | 10.75 ± 4.52 | 5.81 ± 1.51 | |
| Platelet (109/L) | 183.04 ± 74.38 | 213.73 ± 59.60 | |
| HGB | 129.73 ± 28.98 | 147.39 ± 16.33 | |
| Hypertension (N, %) | 318 (62.5%) | ||
| Diabetes (N, %) | 147 (28.9%) |
Numbers in bold mean statistical significance
TG triglyceride; TC total cholesterol; LDL low-density lipoprotein; HDL high-density lipoprotein; UA uric acid; RBC red blood cells; WBC white blood cells; HGB hemoglobin
p a and p b values were calculated by t-test and χ2 test, respectively
Association of CYP11B1 polymorphisms and CHD risk
| SNP | Model | Genotype | Case (N, %) | Control (N, %) | OR (95% CI) | |
|---|---|---|---|---|---|---|
| rs4534 | Allele | C | 592 (58.50%) | 610 (60.04%) | 1.00 | |
| T | 420 (41.50%) | 406 (39.96%) | 1.07(0.89–1.27) | 0.480 | ||
| Codominant | CC | 165 (32.61%) | 181 (35.63%) | 1.00 | ||
| Homozygote | TT | 79 (15.61%) | 79 (15.55%) | 1.11 (0.76 -1.62) | 0.582 | |
| Heterozygote | TC | 262 (51.78%) | 248 (48.82%) | 1.16(0.88–1.53) | 0.279 | |
| Dominant | CC | 165 (32.61%) | 181 (35.63%) | 1.00 | ||
| TT + TC | 341 (67.39%) | 327 (64.37%) | 1.15 (0.89 -1.49) | 0.290 | ||
| Recessive | TC + CC | 427 (84.39%) | 429 (84.45%) | 1.00 | ||
| TT | 79 (15.61%) | 79 (15.55%) | 1.02(0.72–1.43) | 0.928 | ||
| Additive | – | – | – | 1.08(0.90 -1.29) | 0.432 | |
| rs5283 | Allele | G | 703 (69.33%) | 717 (70.715) | 1.00 | |
| A | 311 (30.67%) | 297 (29.29%) | 1.07(0.88–1.29) | 0.497 | ||
| Codominant | GG | 240 (47.33%) | 257 (50.69%) | 1.00 | ||
| Homozygote | AA | 44 (8.68%) | 47 (9.27%) | 0.99 (0.63–1.56) | 0.978 | |
| Heterozygote | AG | 223 (43.99) | 203 (40.03) | 1.18 (0.91–1.53) | 0.214 | |
| Dominant | GG | 240 (47.33%) | 257 (50.69%) | 1.00 | ||
| AA + AG | 267 (52.67%) | 250 (49.31%) | 1.14(0.89–1.46) | 0.286 | ||
| Recessive | AG + GG | 463 (91.32%) | 460 (90.73%) | 1.00 | ||
| AA | 44 (8.68%) | 47 (9.27%) | 0.92(0.60–1.42) | 0.708 | ||
| Additive | – | – | – | 1.07 (0.88–1.29) | 0.510 | |
| rs6410 | Allele | C | 741 (73.08%) | 712 (70.22%) | 1.00 | |
| T | 273 (26.92%) | 306 (30.18%) | 0.86(0.71–1.04) | 0.117 | ||
| Codominant | CC | 271 (53.45%) | 245 (48.13%) | 1.00 | ||
| Homozygote | TT | 37 (7.30%) | 42 (8.25%) | 0.79 (0.49 -1.26) | 0.320 | |
| Heterozygote | TC | 199 (39.25%) | 222 (43.62%) | 0.80(0.62–1.04) | 0.100 | |
| Dominant | CC | 271 (53.45%) | 245 (48.13%) | 1.00 | ||
| TT + TC | 236 (46.55%) | 264 (58.17%) | 0.80(0.63–1.03) | 0.080 | ||
| Recessive | TC + CC | 470 (92.70%) | 467 (91.75%) | 1.00 | ||
| TT | 37 (7.30%) | 42 (8.25%) | 0.87(0.55–1.37) | 0.540 | ||
| Additive | – | – | – | 0.85 (0.70 -1.03) | 0.101 | |
| rs4736312 | Allele | C | 850 (83.83%) | 853 (83.96%) | 1.00 | |
| A | 164 (16.17%) | 163 (16.04%) | 1.01(0.80–1.28) | 0.936 | ||
| Codominant | AA | 356 (70.22%) | 357 (20.28%) | 1.00 | ||
| Homozygote | CC | 13 (2.56%) | 12 (2.36%) | 1.06(0.48–2.36) | 0.888 | |
| Heterozygote | CA | 138 (27.22%) | 139 (27.36%) | 0.99(0.75–1.30) | 0.926 | |
| Dominant | AA | 356 (70.22%) | 357 (70.28%) | 1.00 | ||
| CC + CA | 151 (29.78%) | 151 (29.72%) | 0.99(0.76–1.30) | 0.957 | ||
| Recessive | CA + AA | 494 (97.44%) | 496 (97.64%) | 1.00 | ||
| CC | 13 (2.56%) | 12 (2.36%) | 1.06(0.48–2.36) | 0.880 | ||
| Additive | – | – | – | 1.00(0.79–1.27) | 0.998 | |
| rs5017238 | Allele | A | 838 (83.47%) | 850 (83.83%) | 1.00 | |
| G | 166 (16.53%) | 164 (16.17%) | 1.03(0.81–1.30) | 0.827 | ||
| Codominant | AA | 356 (70.92%) | 357 (70.41%) | 1.00 | ||
| Homozygote | GG | 20 (3.98%) | 14 (2.76%) | 1.40(0.69–2.82) | 0.349 | |
| Heterozygote | GA | 126(25.10%) | 136 (26.82%) | 0.92(0.69–1.22) | 0.573 | |
| Dominant | AA | 356 (70.92%) | 357 (70.41%) | 1.00 | ||
| GG + GA | 146 (29.08%) | 150 (29.59%) | 0.97(0.74–1.27) | 0.804 | ||
| Recessive | GA + AA | 482 (96.02%) | 493 (97.24%) | 1.00 | ||
| GG | 20 (3.98%) | 14 (2.76%) | 1.43(0.71–2.87) | 0.315 | ||
| Additive | – | – | – | 1.02(0.81–1.28) | 0.898 | |
| rs5301 | Allele | C | 841 (83.10%) | 853 (83.79%) | 1.00 | |
| T | 171 (16.90%) | 165 (16.21%) | 1.05(0.83–1.33) | 0.676 | ||
| Codominant | CC | 349 (68.97%) | 356 (69.94%) | 1.00 | ||
| Homozygote | TT | 14 (2.77%) | 12 (2.36%) | 1.16(0.53–2.55) | 0.709 | |
| Heterozygote | TC | 143 (28.26%) | 141 (27.70%) | 1.03(0.78–1.36) | 0.845 | |
| Dominant | CC | 349 (68.97%) | 356 (69.94%) | 1.00 | ||
| TT + TC | 157 (31.03%) | 153 (30.06%) | 1.04(0.79–1.36) | 0.783 | ||
| Recessive | TC + CC | 492 (97.23%) | 497 (97.64%) | 1.00 | ||
| TT | 14 (2.77%) | 12 (2.36%) | 1.15(0.53–2.52) | 0.723 | ||
| Additive | – | 1.04(0.82–1.32) | 0.726 |
SNP single nucleotide polymorphism; OR odds ratio; CI confidence interval
p < 0.05 indicates statistical significance
Adjusted for age and gender
The association between CYP11B1 polymorphisms and CHD susceptibility stratified by age and gender
| Age | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| SNP | Model | Genotype | > 60 years | ≤ 60 years | ||||||
| Case (N, %) | Control (N, %) | OR(95% CI) | Case (N, %) | Control (N, %) | OR(95% CI) | |||||
| rs6410 | Allele | C | 401 (71.10%) | 402 (70.77%) | 1.00 | 340(75.56%) | 310 (68.89%) | 1.00 | ||
| T | 163 (28.90%) | 166 (29.23%) | 0.98(0.76–1.27) | 0.904 | 110 (24.44%) | 140 (31.11%) | 0.72(0.53–0.96) | |||
| Codominant | CC | 144 (51.06%) | 142 (50.00%) | 1.00 | 127 (56.45%) | 103 (45.78%) | 1.00 | |||
| TT | 25 (8.87%) | 24 (8.45%) | 1.01(0.55–1.87) | 0.970 | 12 (5.33%) | 18 (8.00%) | 0.54(0.25–1.18) | 0.122 | ||
| TC | 113 (40.07%) | 118 (41.55%) | 0.89(0.63–1.27) | 0.525 | 86 (38.22%) | 104 (46.22%) | 0.67(0.45–0.99) | 0.042 | ||
| Dominant | CC | 144 (51.06%) | 142 (50.00%) | 1.00 | 127 (56.45%) | 103 (45.78%) | 1.00 | |||
| TT + TC | 138(48.94%) | 130 (50.00%) | 0.91(0.65–1.27) | 0.589 | 98(43.55%) | 122 (54.22%) | 0.65(0.45–0.94) | |||
| Recessive | TC + CC | 257 (91.13%) | 260 (91.55%) | 1.00 | 213 (94.67%) | 207 (92.00%) | 1.00 | |||
| TT | 25 (8.87%) | 24 (8.45%) | 1.07(0.59–1.93) | 0.836 | 12 (5.33%) | 18 (8.00%) | 0.65(0.30–1.38) | 0.258 | ||
| Additive | – | – | – | 0.96(0.74–1.24) | 0.743 | / | / | 0.70(0.52–0.95) | ||
| rs4534 | Allele | C | 341 (60.68%) | 337 (59.33%) | 1.00 | 251 (55.78%) | 273 (60.94%) | 1.00 | ||
| T | 221 (39.32%) | 231 (40.67%) | 0.95(0.75–1.20) | 0.644 | 199 (44.22%) | 175 (39.06%) | 1.24(0.95–1.61) | 0.117 | ||
| Codominant | CC | 104 (37.01%) | 95 (33.45%) | 1.00 | 61 (27.11%) | 86 (38.39%) | 1.00 | |||
| TT | 44 (15.66%) | 42 (14.79%) | 0.99(0.59–1.65) | 0.956 | 35 (15.56%) | 37 (16.52%) | 1.33(0.76–2.35) | 0.321 | ||
| TC | 133 (47.33%) | 147 (51.76%) | 0.82(0.56–1.18) | 0.279 | 129 (57.33%) | 101 (45.09%) | 1.80(1.19–2.74) | |||
| Dominant | CC | 104 (37.01%) | 95 (33.45%) | 1.00 | 61 (27.11%) | 86 (38.39%) | 1.00 | |||
| TT + TC | 177 (62.99%) | 189 (66.55%) | 0.85(0.60–1.21) | 0.372 | 164 (72.89%) | 138 (61.61%) | 1.68(1.13–2.50) | |||
| Recessive | TC + CC | 237 (84.34%) | 233 (85.21%) | 1.00 | 190 (84.44%) | 187 (83.48%) | 1.00 | |||
| TT | 44 (15.66%) | 42 (14.79%) | 1.11(0.70–1.77) | 0.658 | 35 (15.56%) | 37 (16.52%) | 0.93(0.56–1.54) | 0.780 | ||
| Additive | – | – | – | 0.95(0.74–1.22) | 0.694 | / | / | 1.25(0.95–1.65) | 0.108 | |
SNP single nucleotide polymorphism; OR odds ratio; 95% CI 95% confidence interval
p values were calculated by logistic regression analysis with adjustment for age and gender
Bold values indicate statistical significance (p < 0.05)
Associations of CYP11B1 polymorphisms and CHD risk stratified by diabetes and hypertension
| SNP | Model | Genotype | Diabetes | Hypertension | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Case (N, %) | Control (N, %) | OR(95% CI) | Case (N, %) | Control (N, %) | OR(95% CI) | |||||
| rs5283 | Allele | G | 187 (63.61%) | 516 (71.67%) | 1.00 | 439 (69.24%) | 264 (69.47%) | 1.00 | ||
| A | 107 (36.39%) | 204(28.33%) | 1.45(1.09–1.93) | 195 (30.76%) | 116 (30.53%) | 1.01(0.77–1.33) | 0.939 | |||
| Codominant | GG | 55 (37.42%) | 185 (51.39%) | 1.00 | 150 (47.32%) | 90 (47.37%) | 1.00 | |||
| AA | 15 (10.20%) | 29 (8.06%) | 1.73(0.86–3.46) | 0.123 | 28 (8.83%) | 16 (8.42%) | 1.06(0.54–2.08) | 0.868 | ||
| AG | 77 (52.38%) | 146 (40.55%) | 1.79(1.19–2.70) | 139 (43.85%) | 84 (44.21%) | 0.98(0.67–1.44) | 0.921 | |||
| Dominant | GG | 55 (37.42%) | 185 (51.39%) | 1.00 | 150 (47.32%) | 90 (47.37%) | 1.00 | |||
| AA + AG | 92 (62.58%) | 175 (48.61%) | 1.78(1.20–2.64) | 167 (52.68%) | 100 (52.63%) | 0.99(0.69–1.4) | 0.972 | |||
| Recessive | AG + GG | 132 (89.08%) | 331 (91.94%) | 1.00 | 289 (91.17%) | 174 (91.58%) | 1.00 | |||
| AA | 15 (10.20%) | 29 (8.06%) | 1.29(0.67–2.49) | 0.450 | 28 (8.83%) | 16 (8.42%) | 1.07(0.56–2.05) | 0.842 | ||
| Additive | – | – | – | 1.47(1.09–1.98) | / | / | 1.01(0.76–1.34) | 0.952 | ||
| rs4534 | Allele | C | 186 (63.70%) | 406 (56.39%) | 1.00 | 356 (56.33%) | 236 (62.11%) | 1.00 | ||
| T | 106 (36.30%) | 314 (43.61%) | 0.74(0.56–0.98) | 276 (43.67%) | 144 (37.89%) | 1.27(0.98–1.65) | 0.071 | |||
| Codominant | CC | 57 (39.04%) | 108 (30.00%) | 1.00 | 98 (31.01%) | 67 (35.26%) | 1.00 | |||
| Homozygote | TT | 17 (11.64%) | 62 (17.22%) | 0.53(0.28–0.99) | 58 (18.35%) | 21 (11.05%) | 1.97(1.08–3.59) | |||
| Heterozygote | TC | 72 (49.32%) | 190 (52.78%) | 0.74(0.48–1.13) | 0.157 | 160 (50.63%) | 102 (53.69%) | 1.12(0.75–1.68) | 0.581 | |
| Dominant | CC | 57 (39.04%) | 108 (30.00%) | 1.00 | 98 (31.01%) | 67 (35.26%) | 1.00 | |||
| TT + TC | 89 (60.96%) | 252 (70.00%) | 0.69(0.46–1.03) | 0.068 | 218 (68.99%) | 123 (64.74%) | 1.26(0.86–1.87) | 0.238 | ||
| Recessive | TC + CC | 129 (88.36%) | 298 (82.78%) | 1.00 | 258 (81.65%) | 169 (88.95%) | 1.00 | |||
| TT | 17 (11.64%) | 62 (17.22%) | 0.64(0.36–1.14) | 0.126 | 58 (18.35%) | 21 (11.05%) | 1.84(1.07–3.16) | |||
| Additive | – | – | – | 0.73(0.54–0.98) | / | / | 1.33(1.01–1.75) | |||
CHD coronary heart disease; SNP single nucleotide polymorphism; OR odds ratio; 95% CI 95% confidence interval
p values were calculated by logistic regression analysis with adjustment for age and gender
Bold values indicate statistical significance (p < 0.05)
Haplotype analysis of CYP11B1 polymorphisms and CHD risk
| Haplotypes | Frequency in case | Frequency in control | Without adjustment | With adjustment | ||
|---|---|---|---|---|---|---|
| OR(95% CI) | OR(95% CI) | |||||
| Crs4736312Ars5017238Crs5301Grs5283Crs6410Trs4534 | 0.414 | 0.400 | 1.00 | 1.00 | ||
| Crs4736312Ars5017238Crs5301Ars5283Crs6410Crs4534 | 0.304 | 0.289 | 1.00 (0.81–1.24) | 0.99 | 1.00 (0.81–1.24) | 1.000 |
| Ars4736312Grs5017238Trs5301Grs5283Trs6410Crs4534 | 0.159 | 0.157 | 0.95 (0.74–1.24) | 0.73 | 0.95 (0.73–1.23) | 0.690 |
| Crs4736312Ars5017238Crs5301Grs5283Trs6410Crs4534 | 0.107 | 0.144 | 0.72 (0.54–0.96) | 0.72 (0.54–0.96) | ||
CHD coronary heart disease; OR odds ratio; 95% CI, 95% confidence interval
Bold values indicate statistical significance (p < 0.05)
Fig. 1Haplotype block map for SNPs in CYP11B1. Block 1 includes rs4736312, rs5017238, rs5301, rs5283, rs6410 and rs4534. The numbers inside the diamonds indicate the D’ for pairwise analyses.
Fig. 2The Fruchterman-Reingold of SNP-SNP interactions. Each SNP is reported in per cent the value of Information Gain (IG), while numbers in the connections indicate the entropy-based IG for the SNP pairs. Orange bar indicate the high-level synergies on the phenotype, while the brown indicate a medium-level interaction, green and blue connections with negative IG values indicate redundancy or lack of synergistic interactions between the markers
MDR analysis of SNP-SNP interactions
| Model | Training Bal. Acc | Testing Bal. Acc | CVC | OR (95% CI) | |
|---|---|---|---|---|---|
| rs6410 | 0.527 | 0.518 | 7/10 | 1.24 (0.97–1.58) | 0.091 |
| rs5017238,rs6410 | 0.542 | 0.492 | 7/10 | 1.39 (1.08–1.79) | |
| rs5017238,rs6410,rs4534 | 0.550 | 0.500 | 7/10 | 1.46 (1.14–1.87) | |
| rs5017238,rs5301,rs5283,rs4534 | 0.554 | 0.503 | 6/10 | 1.51 (1.18–1.93) | |
| rs4736312,rs5017238,rs5301,rs5283,rs4534 | 0.554 | 0.503 | 6/10 | 1.51 (1.18–1.93) | |
| rs4736312,rs5017238,rs5301,rs5283,rs6410,rs4534 | 0.554 | 0.497 | 10/10 | 1.51 (1.18–1.93) |
MDR multifactor dimensionality reduction; Bal. Acc. balanced accuracy; CVC cross–validation consistency; OR, odds ratio; CI, confidence interval
p < 0.05 indicates statistical significance, which was indicated in bold