| Literature DB >> 35821621 |
Shiv Verma1,2, Prem Prakash Kushwaha1,2, Eswar Shankar1,2, Lee E Ponsky1,2, Sanjay Gupta1,2,3,4,5,6,7.
Abstract
BACKGROUND: Androgen deprivation therapy (ADT) is a standard treatment modality for locally advanced, high-risk, and metastatic hormone-sensitive prostate cancer. Long-term ADT treatment likely develops side-effects that include changes in cognition or onset of dementia. However, the molecular understanding of this effect remains elusive. We attempt to establish a link between ADT and changes in cognitive function using patient databases and bioinformatics analyses.Entities:
Keywords: androgen deprivation therapy; antiandrogens; brain deficits; cognitive impairment; proinflammatory cytokines; prostate cancer
Mesh:
Substances:
Year: 2022 PMID: 35821621 PMCID: PMC9544768 DOI: 10.1002/pros.24411
Source DB: PubMed Journal: Prostate ISSN: 0270-4137 Impact factor: 4.012
List of primers used in the study
| Name | Type | Strand | Sequence | Length | Start | End | Amplicon length |
|---|---|---|---|---|---|---|---|
|
| Primer | + | AAGCAGAAGTGGGTTCAGG | 19 | 300 | 318 | 90 |
| Primer | − | ATTCTTGGGTTGTGGAGTGAG | 21 | 389 | 369 | ||
|
| Primer | + | AATTCACCTTCCAGTGTCTCG | 21 | 939 | 959 | 149 |
| Primer | − | AAGTGCTGGGATTACAGGC | 19 | 1087 | 1069 | ||
|
| Primer | + | AAAAGTCCTGATCCAGTTCCTG | 22 | 435 | 456 | 135 |
| Primer | − | TGAGTTGTCATGTCCTGCAG | 20 | 569 | 550 | ||
|
| Primer | + | ACTCGTATATGTCTCAGGTCCC | 22 | 1527 | 1548 | 116 |
| Primer | − | GAAGTCACAGGAAGTAGGGAAC | 22 | 1642 | 1621 | ||
|
| Primer | + | GTTCTCTTCCCCGTGATCTTC | 21 | 1199 | 1219 | 123 |
| Primer | − | GAACCTCTGCACCTGACTTAG | 21 | 1321 | 1301 | ||
|
| Primer | + | AGGGAAGTTGGAAGGAGATTG | 21 | 6134 | 6154 | 147 |
| Primer | − | GGAGAAGCCACGAATCTAACTG | 22 | 6280 | 6259 | ||
|
| Primer | + | CGCAATGAGGACCCTGAGAG | 20 | 289 | 308 | 92 |
| Primer | − | TAGTCCACGTTCCCATCAGC | 20 | 380 | 361 |
Figure 1Comparative analysis of RNA sequencing data. (A) IPA comparative module was explored to analyze the RNA sequencing data of differentially expressed genes of prostate cancer patients under ADT overlaid with Alzheimer/dementia patient database. (B) The identified 33 genes belong to the cytokines gene family along with growth factors genes differentially expressed and shared in both data sets. Data represented in log2 expression fold change. ADT, androgen deprivation therapy; IPA, ingenuity pathway analysis. [Color figure can be viewed at wileyonlinelibrary.com]
List of top 22 canonical signaling pathways their respective ratio, Z score, and –log (BH p values) and associated cytokines molecules
| Ingenuity canonical pathways | –Log (B−H | Ratio |
| Molecules |
|---|---|---|---|---|
| IL‐17 signaling | 14.9 | 0.0642 | 3.464 | CCL2, CCL20, CCL22, CSF3, CXCL1, CXCL8, IL‐18, IL‐6, LIF, LTB, MMP9, OSM |
| B‐cell signaling pathway | 7.4 | 0.0291 | 2.828 | CXCL8, IL‐10, IL‐18, IL‐6, LIF, LTB, MCL1, OSM |
| Differential regulation of cytokine production in macrophages and T‐helper cells by IL‐17A and IL‐17F | 14.0 | 0.389 | 2.646 | CCL2, CCL3, CCL5, CSF3, CXCL1, IL‐10, IL‐6 |
| Hepatic fibrosis signaling pathway | 5.3 | 0.0185 | 2.646 | CCL2, CCL3, CCL5, CXCL8, IL‐18, IL‐1RN, SERPINE1 |
| TREM1 signaling | 8.0 | 0.08 | 2.449 | CCL2, CCL3, CXCL8, IL‐10, IL‐18, IL‐6 |
| HMGB1 signaling | 8.9 | 0.0485 | 2.449 | CCL2, CXCL8, IL‐18, IL‐6, LIF, LTB, OSM, SERPINE1 |
| Differential regulation of cytokine production by IL‐17A and IL‐17F | 10.8 | 0.261 | 2.449 | CCL2, CCL3, CCL5, CSF3, CXCL1, IL‐10 |
| Neuroinflammation signaling pathway | 8.5 | 0.03 | 2.333 | CCL2, CCL3, CCL5, CXCL8, FAS, IL‐10, IL‐18, IL‐6, MMP9 |
| Acute phase response signaling | 4.6 | 0.0278 | 2.236 | IL18, IL‐1RN, IL‐6, OSM, SERPINE1 |
| IL‐6 signaling | 5.3 | 0.0397 | 2.236 | CXCL8, IL‐18, IL‐1RN, IL‐6, MCL1 |
| Cardiac hypertrophy signaling (enhanced) | 3.5 | 0.0121 | 2.236 | CXCL8, IL‐18, IL‐6, LIF, LTB, OSM |
| Senescence pathway | 3.7 | 0.0182 | 2.236 | CDKN1A, CXCL8, GADD45A, IL‐6, SERPINE1 |
| Tumor microenvironment pathway | 8.8 | 0.0455 | 2.121 | CCL2, CSF3, CXCL8, FAS, IL‐10, IL‐6, MMP9, OSM |
| HIF1α signaling | 3.1 | 0.0195 | 2 | CDKN1A, IL‐6, MMP9, SERPINE1 |
| Crosstalk between dendritic cells and natural killer cells | 4.4 | 0.0449 | 2 | FAS, IL‐18, IL‐6, LTB |
| Role of IL‐17F in inflammatory diseases | 5.5 | 0.093 | 2 | CCL2, CXCL1, CXCL8, IL‐6 |
| T‐cell signaling pathway | 2.4 | 0.012 | 2 | FAS, GADD45A, IL‐10, IL‐6 |
| Role of MAPK signaling | 4.7 | 0.0533 | 2 | CCL2, CCL5, CXCL8, IL‐6 |
| Dendritic cell maturation | 4.5 | 0.0272 | 1.342 | IL‐10, IL‐18, IL‐1RN, IL‐6, LTB |
| LXR/RXR activation | 5.3 | 0.1413 | −2.236 | CCL2, IL‐18, IL‐1RN, IL‐6, MMP9 |
| Erythropoietin signaling pathway | 5.9 | 0.0347 | −2.449 | CXCL8, IL‐18, IL‐6, LIF, LTB, OSM |
Abbreviation: B−H, Benjamini−Hochberg.
Figure 2Quantitative real time‐PCR (qRT‐PCR) analysis of cytokines. qRT‐PCR was performed in cytokines which include LIFR, IL‐1RN, IL‐6, IL‐10, CCL2, LIF, and IL‐17A. (A) Prostate cancer cell lines C4‐2B and (B) LNCaP cells, and (C) brain glial M059K cells and (D) brain neural BT142 cells were treated with 20 µM enzalutamide for 24 h. X‐axis of the graph denotes relative expression values (log2) and Y‐axis denotes the cytokine's levels. Experiments were performed using three biological and three technical replicates. The expression of GAPDH and ACTB was used as internal control in the experiment. The error bars in the graph show standard deviation (+SD). ***p < 0.001, and **p < 0.05; ns, nonsignificant. [Color figure can be viewed at wileyonlinelibrary.com]
Figure 3Cytokine gene expression in PRAD. Expression of cytokines LIFR, IL‐1RN, IL‐6, IL‐10, CCL2, LIF, and IL‐17A in aged (41−80 years) prostate cancer patients using UALCAN. Box‐whisker plots showing the expression of cytokines in prostate cancer patients (PRAD) in age‐wise manner. The expression of normal patients was compared to prostate cancer aged patients and analyzed statistically. The X‐axis represents patients' age and Y‐axis denoted gene expression value in transcript per million (TPM). ns, nonsignificant; PRAD, prostate adenocarcinoma. [Color figure can be viewed at wileyonlinelibrary.com]
Figure 4The cBioPortal prostate cancer database. Cytokine expression in prostate cancer patients exposed to ADT. TCGA data—expression in log2 value of fragments per kilobase of exon per million (FPKM) mapped fragments of cytokines IL‐6, IL‐17A, IL‐17RA, CCL2, LIFR, IL‐10, IL‐1RN, and LIF in prostate cancer patient on ADT treatment. ADT, androgen deprivation therapy. [Color figure can be viewed at wileyonlinelibrary.com]
Figure 5Heat map representation of cytokine gene expression in Alzheimer, dementia, and aging patients in different regions of brain which include frontal white matter and hypothalamus, temporal cortex, and parietal cortex. Z‐score was calculated and shown in colors, red color denotes high expression, blue color represents low level of expression, and white represent nil or zero expression. [Color figure can be viewed at wileyonlinelibrary.com]
Figure 6Cytokine and immune cell infiltration in PRAD (prostate adenocarcinoma); scatter plots were generated using with the tumor immune estimation resource gene module tool to identify the immune cell profiles associated with cytokines expression in PRAD. For each gene and respective immune cells correlation score was calculated along with p values. [Color figure can be viewed at wileyonlinelibrary.com]