| Literature DB >> 35818028 |
John M Brooks1,2, Cole G Chapman3,4, Sarah B Floyd4,5, Brian K Chen6,4, Charles A Thigpen4,7, Michael Kissenberth4,8.
Abstract
BACKGROUND: Comparative effectiveness research (CER) using observational databases has been suggested to obtain personalized evidence of treatment effectiveness. Inferential difficulties remain using traditional CER approaches especially related to designating patients to reference classes a priori. A novel Instrumental Variable Causal Forest Algorithm (IV-CFA) has the potential to provide personalized evidence using observational data without designating reference classes a priori, but the consistency of the evidence when varying key algorithm parameters remains unclear. We investigated the consistency of IV-CFA estimates through application to a database of Medicare beneficiaries with proximal humerus fractures (PHFs) that previously revealed heterogeneity in the effects of early surgery using instrumental variable estimators.Entities:
Keywords: Classification and regression trees (CART); Instrumental Variable Causal Forest Algorithm; Proximal humerus fracture; Surgery; Two-stage least squares (2SLS) estimators
Mesh:
Year: 2022 PMID: 35818028 PMCID: PMC9275148 DOI: 10.1186/s12874-022-01663-0
Source DB: PubMed Journal: BMC Med Res Methodol ISSN: 1471-2288 Impact factor: 4.612
Distribution of Instrumental Variable Causal Forest Algorithm Early Surgery Absolute Effects on the Benefit Outcomea for Medicare Patients with Proximal Humerus Fractures in 2011 by Number of Trees in IV-CFA Forest and Minimum Leaf Node Population Size in Each Tree
| Trees in IV-CFA Forest | Minimum Leaf Node Population Size | Mean | St Dev | Percent of Patients with Positive Effect | Min | 10th | 25th | 50th | 75th | 90th | Max |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 3000 | 50 | .198 | .327 | 75% | -1.448 | -.193 | .0001 | .203 | .411 | .586 | 1.368 |
| 100 | .196 | .236 | 81% | -.729 | -.088 | .056 | .204 | .350 | .481 | .908 | |
| 200 | .197 | .175 | 88% | -.449 | -.033 | .100 | .210 | .311 | .418 | .675 | |
| 300 | .198 | .147 | 90% | -.284 | -.005 | .110 | .213 | .299 | .373 | .587 | |
| 400 | .198 | .131 | 91% | -.220 | .013 | .118 | .214 | .290 | .358 | .518 | |
| 4000 | 50 | .197 | .331 | 75% | -1.457 | -.208 | -.004 | .200 | .413 | .593 | 1.366 |
| 100 | .197 | .237 | 81% | -.727 | -.094 | .058 | .204 | .353 | .480 | .906 | |
| 200 | .196 | .177 | 87% | -.434 | -.038 | .096 | .208 | .312 | .421 | .659 | |
| 300 | .197 | .148 | 90% | -.283 | -.008 | .109 | .213 | .299 | .374 | .565 | |
| 400 | .198 | .132 | 91% | -.206 | .014 | .116 | .215 | .290 | .362 | .512 | |
| 5000 | 50 | .198 | .327 | 75% | -1.389 | -.201 | .003 | .202 | .413 | .590 | 1.375 |
| 100 | .197 | .234 | 81% | -.721 | -.087 | .060 | .201 | .352 | .477 | .882 | |
| 200 | .197 | .172 | 87% | -.417 | -.032 | .100 | .209 | .308 | .414 | .663 | |
| 300 | .198 | .145 | 90% | -.278 | -.004 | .112 | .214 | .296 | .369 | .560 | |
| 400 | .198 | .129 | 91% | -.189 | .018 | .117 | .217 | .286 | .354 | .505 |
a1 if patient survives 61–365 days after index proximal humerus fracture with less than $300 of shoulder-related healthcare costs, 0 otherwise
Distribution of Instrumental Variable Causal Forest Algorithm Early Surgery Absolute Effects on the Detriment Outcomea for Medicare Patients with Proximal Humerus Fractures in 2011 by Number of Trees in IV-CFA Forest and Minimum Leaf Node Population Size in Each Tree
| Trees in IV-CFA Forest | Minimum Leaf Node Population Size | Mean | St Dev | Percent of Patients with Positive Effect | Min | 10th | 25th | 50th | 75th | 90th | Max |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 3000 | 50 | .139 | .265 | 72% | -1.369 | -.186 | -.021 | .143 | .304 | .468 | 1.107 |
| 100 | .137 | .172 | 77% | -.376 | -.086 | .013 | .138 | .254 | .354 | .679 | |
| 200 | .137 | .115 | 87% | -.207 | -.014 | .048 | .146 | .218 | .288 | .457 | |
| 300 | .136 | .093 | 92% | -.158 | .012 | .067 | .141 | .202 | .255 | .383 | |
| 400 | .137 | .077 | 96% | -.105 | .032 | .082 | .143 | .191 | .239 | .351 | |
| 4000 | 50 | .135 | .264 | 72% | -1.254 | -.188 | -.020 | .136 | .297 | .462 | 1.090 |
| 100 | .136 | .171 | 77% | -.357 | -.086 | .015 | .136 | .251 | .350 | .703 | |
| 200 | .135 | .115 | 86% | -.200 | -.017 | .047 | .142 | .219 | .283 | .430 | |
| 300 | .136 | .093 | 92% | -.145 | .009 | .067 | .142 | .203 | .256 | .373 | |
| 400 | .135 | .078 | 95% | -.106 | .031 | .081 | .140 | .190 | .236 | .338 | |
| 5000 | 50 | .136 | .263 | 71% | -1.209 | -.189 | -.023 | .139 | .300 | .462 | 1.152 |
| 100 | .137 | .171 | 77% | -.381 | -.081 | .013 | .136 | .251 | .350 | .697 | |
| 200 | .138 | .114 | 87% | -.194 | -.014 | .048 | .144 | .218 | .286 | .435 | |
| 300 | .136 | .091 | 93% | -.142 | .012 | .069 | .142 | .202 | .254 | .384 | |
| 400 | .136 | .078 | 95% | -.089 | .031 | .080 | .141 | .191 | .237 | .350 |
a1 the patient died or had an adverse event during the period 61–365 days following the index PHF, 0 otherwise
Fig. 1Regression Tree for Causal Instrumental Variable-Based Early Surgery Effect on the Probability of Benefit#
Fig. 2Regression Tree for Causal Instrumental Variable-Based Early Surgery Effect on the Probability of Detriment#
Third-level Split Ex-Post Reference Class Designations by Minimum Leaf Node Size in IV-CFA Estimation on the Benefit Outcome for Medicare Patients with Proximal Humerus Fractures in 2011 with 4000 Trees in the Forest
| Third-level Split Nodes | ||||||||
|---|---|---|---|---|---|---|---|---|
| Minimum Leaf Node Size | Highest ← Early Surgery Effect on Benefit Outcome → Lowest | |||||||
| 50 | < 86, CCI = 0, Not in lowest 2 pre cost quintiles | ≥ 86, Highest pre cost quintile, CCI > 4 | < 86, CCI = 0, Lowest 2 pre cost quintiles | < 86, CCI > 0, Highest pre cost quintile | < 86, CCI > 0, Not highest pre cost quintile | ≥ 86, Highest pre cost quintile, CCI ≤ 4 | ≥ 86, Not highest pre cost quintile, FRI ≤ 2 | ≥ 86, Not highest pre cost quintile, FRI > 2 |
| 100 | < 86, CCI = 0, Not in lowest pre cost quintile | ≥ 86, Highest pre cost quintile, CCI > 4 | < 86, CCI = 0, Lowest pre cost quintile | < 86, CCI > 0, Highest pre cost quintile | < 86, CCI > 0, Not highest pre cost quintile | ≥ 86, Not highest pre cost quintile, CCI ≤ 1 | ≥ 86, Highest pre cost quintile, CCI ≤ 4 | ≥ 86, Not highest pre cost quintile, CCI > 1 |
| 200 | CCI = 0, < 86, Not in lowest pre cost quintile | CCI = 0, < 86, Lowest pre cost quintile | CCI > 0, < 86, Highest pre cost quintile | CCI > 0, ≥ 86, Highest pre cost quintile | CCI = 0, ≥ 86 | CCI = 0, ≥ 86 | CCI > 0, < 86, Not highest pre cost quintile | CCI > 0, ≥ 86, Not highest pre cost quintile |
| 300 | CCI = 0, < 86, Not in lowest pre cost quintile | CCI = 0, < 86, Lowest pre cost quintile | CCI > 0, < 86, Highest pre cost quintile | CCI = 0, ≥ 86 | CCI = 0, ≥ 86 | CCI > 0, ≥ 86, Highest pre cost quintile | CCI > 0, < 86, Not highest pre cost quintile | CCI > 0, ≥ 86, Not highest pre cost quintile |
| 400 | CCI = 0, < 86, Not in lowest pre cost quintile | CCI > 4, Highest pre cost quintile | CCI = 0, < 86, Lowest pre cost quintile | CCI = 0, ≥ 86 | CCI = 0, ≥ 86 | 0 < CCI ≤ 4, Highest pre cost quintile | CCI > 0, < 86, Not highest pre cost quintile | CCI > 0, ≥ 86, Not highest pre cost quintile |
CCI: Charlson Comorbidity Index score based on Medicare claims in the year prior to index proximal humerus fracture
FRI: Frailty Risk Index score based on Medicare claims in the year prior to index proximal humerus fracture
Cost Quintiles: Based on Medicare spending in the 365 days prior to the index PHF
Benefit: 1 if patient survives 61–365 days after index proximal humerus fracture with less than $300 of shoulder-related healthcare costs, 0 otherwise
Third-level Split Ex-Post Reference Class Designations by Minimum Leaf Node Size in IV-CFA Estimation on the Detriment Outcome for Medicare Patients with Proximal Humerus Fractures in 2011 with 4000 Trees in the Forest
| Third-level Split Nodes | ||||||||
|---|---|---|---|---|---|---|---|---|
| Minimum Leaf Size | Lowest ← Early Surgery Effect on Detriment Outcome → Highest | |||||||
| 50 | CCI ≤ 2, Lowest pre cost quintile, FRI > 0 | CCI ≤ 2, Not lowest pre cost quintile, FRI ≤ 1 | CCI > 6, Highest pre cost quintile | CCI ≤ 2, Not lowest pre cost quintile, FRI > 1 | CCI > 6, Not highest pre cost quintile | 2 < CCI ≤ 6, 70 + | CCI ≤ 2, Lowest pre cost quintile, FRI = 0 | 2 < CCI ≤ 6, < 70 |
| 100 | CCI > 6, Highest pre cost quintile | CCI ≤ 2, Not lowest pre cost quintile, FRI ≤ 1 | CCI ≤ 2, Lowest pre cost quintile, FRI > 0 | CCI ≤ 2, Not lowest pre cost quintile, FRI > 1 | 2 < CCI ≤ 6, Highest pre cost quintile | CCI > 2, Not highest pre cost quintile, < 86 | CCI ≤ 2, Lowest pre cost quintile, FRI = 0 | CCI > 2, Not highest pre cost quintile, 86 + |
| 200 | CCI ≤ 2, Not lowest pre cost quintile, FRI ≤ 1 | CCI > 6, Highest pre cost quintile | CCI ≤ 2, Lowest pre cost quintile, FRI > 0 | CCI ≤ 2, Not lowest pre cost quintile, FRI > 1 | 2 < CCI ≤ 6, Highest pre cost quintile | CCI > 2, Not highest pre cost quintile, < 86 | CCI ≤ 2, Lowest pre cost quintile, FRI = 0 | CCI > 2, Not highest pre cost quintile, 86 + |
| 300 | CCI ≤ 2, Not lowest pre cost quintile, FRI ≤ 1 | CCI > 6, Highest pre cost quintile | CCI ≤ 2, Lowest pre cost quintile, FRI > 0 | CCI ≤ 2, Not lowest pre cost quintile, FRI > 1 | 2 < CCI ≤ 6, Highest pre cost quintile | CCI > 2, Not highest pre cost quintile, < 86 | CCI ≤ 2, Lowest pre cost quintile, FRI = 0 | CCI > 2, Not highest pre cost quintile, 86 + |
| 400 | CCI ≤ 2, Not lowest pre cost quintile, FRI ≤ 1 | CCI > 6, Highest pre cost quintile | CCI ≤ 2, Lowest pre cost quintile, FRI > 0 | CCI ≤ 2, Not lowest pre cost quintile, FRI > 1 | 2 < CCI ≤ 6, Highest pre cost quintile | CCI > 2, Not highest pre cost quintile, < 86 | CCI ≤ 2, Lowest pre cost quintile, FRI = 0 | CCI > 2, Not highest pre cost quintile, 86 + |
CCI: Charlson Comorbidity Index score based on Medicare claims in the year prior to index proximal humerus fracture
FRI: Frailty Risk Index score based on Medicare claims in the year prior to index proximal humerus fracture
Cost Quintiles: Based on Medicare spending in the 365 days prior to the index PHF
Detriment: 1 the patient died or had an adverse event during the period 61–365 days following the index PHF, 0 otherwise. Adverse events include pneumonia, cardiac dysrhythmias, congestive heart failure, deep vein thrombosis or pulmonary embolism, infection, nerve injury, prosthetic complication, hematoma, avascular necrosis, adhesive capsulitis, and instability or dislocation
Two-Stage Least Squares (2SLS) Estimates by Benefit and Detriment by Ex-Post Reference Classes for Third-level CART Splits
R = early surgery rate; (*,*) = the inter-quintile range in early surgery rates across patients in the node; F = F-statistic of the effect of the instrument on early surgery choice in the first stage; IVE = the 2SLS estimated absolute effect of early surgery on the probability of the respective outcome; N = the number of patients in the node; D_IVE the study population wide 2SLS absolute effect of early surgery on detriment; and B_IVE the study population wide 2SLS absolute effect of early surgery on benefit. CCI: Charlson Comorbidity Index score based on Medicare claims in the year prior to index proximal humerus fracture. FRI: Frailty Risk Index score based on Medicare claims in the year prior to index proximal humerus fracture
*, **, *** p < .1, p < .05, p < .01 respectively