David J Bray1, Richard L Anderson1, Patrick B Warren1, Kenneth Lewtas2,3. 1. The Hartree Centre, STFC Daresbury Laboratory, Warrington WA4 4AD, United Kingdom. 2. Lewtas Science & Technologies Ltd., 246 Banbury Road, Oxford OX2 7DY, United Kingdom. 3. School of Chemistry, The University of Edinburgh, Joseph Black Building, David Brewster Road, Edinburgh EH9 3FJ, United Kingdom.
Abstract
Building on previous work studying alkanes, we develop a dissipative particle dynamics (DPD) model to capture the behavior of the alkyl aromatic hydrocarbon family under ambient conditions of 298 K and 1 atmosphere. Such materials are of significant worldwide industrial importance in applications such as solvents, chemical intermediates, surfactants, lubricating oils, hydraulic fluids, and greases. We model both liquids and waxy solids for molecules up to 36 carbons in size and demonstrate that we can correctly capture both the freezing transition and liquid-phase densities in pure substances and mixtures. We also demonstrate the importance of including specialized bead types into the DPD model (rather than solely relying on generic bead types) to capture specific local geometrical constructs such as the benzene ring found in the benzyl chemical group; this can be thought of as representing subtle real-world many-body effects via customized pairwise non-bonded potentials.
Building on previous work studying alkanes, we develop a dissipative particle dynamics (DPD) model to capture the behavior of the alkyl aromatic hydrocarbon family under ambient conditions of 298 K and 1 atmosphere. Such materials are of significant worldwide industrial importance in applications such as solvents, chemical intermediates, surfactants, lubricating oils, hydraulic fluids, and greases. We model both liquids and waxy solids for molecules up to 36 carbons in size and demonstrate that we can correctly capture both the freezing transition and liquid-phase densities in pure substances and mixtures. We also demonstrate the importance of including specialized bead types into the DPD model (rather than solely relying on generic bead types) to capture specific local geometrical constructs such as the benzene ring found in the benzyl chemical group; this can be thought of as representing subtle real-world many-body effects via customized pairwise non-bonded potentials.
Alkyl aromatics are a
series of very important chemicals in use
worldwide. The shorter alkyl benzenes, such as toluene, xylene, ethyl
benzene, etc., are found in solvents, fuel blending, adhesives, paints,
and inks. Perhaps their most important uses are as chemical intermediates
to make industrial important materials; for example, p-xylene is used as a precursor to make terephthalic acid, which then
used to make polyethylene terephthalate (PET); o-xylene
is used to make phthalic acid/anhydride, which can then be made into
phthalate plasticizers; ethyl benzene can be converted into styrene,
which can then be converted into polystyrene (PS); m-xylene can be converted into alkyd resins.[1] The longer alkyl aromatics are equally important to today’s
technology: they are precursors in the manufacture of surfactants
that go into lubricating oils, cleaners, and detergents. For example,
linear alkylbenzenes (LAB) are high-volume products and are used to
make sulfonates (LABS) to be used in household detergents, dishwashing
liquids, laundry liquids, laundry powders, and other household cleaners.[2,3] It should be noted that linear alkyl groups are preferred because
they biodegrade much more rapidly.[4]There are several readily available atomistic molecular dynamics
(MD) force fields with parameters for benzene and benzene-containing
molecules; these include CHARMM27,[5,6] AMBER ff19SB,[7] etc., used for the study of proteins, lipids,
DNA, and many small organic molecules and OPLS-AA, OPLS-CS,[8,9] TraAPPE,[10,11] etc., for hydrocarbons. To access
longer time scales, coarse-grained (CG) molecular dynamics (CG-MD)
models have been developed, which gain computational efficiency by
reducing the level of molecular detail through combining atoms into
CG beads. This approach has led to several CG parameterization efforts
for benzene such as simple solvents[12,13] and via SAFT
approaches.[14]Dissipative particle
dynamics (DPD) provides an alternative coarse-graining
approach, which has seen significant development in recent decades.[15] In the DPD approach, CG beads can be used to
represent fragments of a molecule, whole molecules, or collections
of molecules.[16−18] These DPD beads interact via soft potentials that
incorporate chemical specificity. A pairwise, momentum-conserving
thermostat is typically also included, which yields simulations in
an NVT ensemble.[19] The combination of these
enables DPD to access much longer length and time scales than MD or
CG-MD type approaches.DPD models of small benzene-derived molecules
(e.g., benzene, toluene,
etc.) have been used to study properties such as
interfacial tension,[20] phase diagrams,
and the octanol–water partition coefficient.[21] However, in these models, the benzene-derived molecules
are always a component (often dilute) of a more complex system, and
the anhydrous neat properties of these molecules are not the focus
of the study. Moreover to our knowledge, the behavior of the longer
alkylbenzenes has not been considered by simulation, and as such,
a systematic and transferable parameter set has not been developed.In our previous work on alkanes,[22] we
demonstrated that a DPD model that incorporates the appropriate angular
rigidity and bond stiffness can exhibit a freezing transition, and
for example, we can observe the spontaneous formation of crystalline
domains in melts and the precipitation of crystals out of solution.
Using this approach, we were able to develop a set of DPD interaction
parameters for alkanes at room temperature, which obtains the correct
liquid or solid state across the wide range of carbon chain lengths
from n-pentane (C5) to n-pentatricotane (C35). Furthermore, we were able to show
that waxy alkanes (C18 onwards) precipitate out of solution
(where n-heptane is the solvent) at concentrations
that correspond to experimental observation.In this work, by
the careful determination of the bond and angle
constraints of the benzene ring and in addition to the non-bonded
interaction, we extend our DPD force field to capture the liquid-
and solid-phase behavior of alkylbenzenes under ambient conditions
corresponding to room temperature (298 K / 25 °C) and atmospheric
pressure (1 atm). In the course of this parametrization, we show that
to capture the chemistry accurately, we need to include “bespoke”
arrangements of bead types to represent certain chemical structures
in contradistinction to the transferable bead types commonly associated
with DPD (Table ).
It appears that these bespoke arrangements are necessary to account
for subtle real-world many-body effects and represent them in the
pairwise interactions.
Table 1
Examples of Chemical Structures Representable
with the Current Model
In building the models, we consider the ambient conditions
to be
fixed, since to do otherwise would require extending the DPD methodology
to incorporate the pressure and temperature dependence of these properties
into the potentials as discussed previously in Bray et al.;[22] accordingly, we leave this aspect to future
work.The remainder of the article is arranged as follows: In
the Methods section, we outline the adopted
CG model
including details on the coarse-graining strategy, molecular architecture,
and the crucial DPD interaction parameters used. We then give details
of the simulation setup and summarize how solid waxes are identified
from our simulations. The Results section
presents the performance of the model in reproducing liquid densities
and key behaviors associated with waxes (such as liquid–solid
transitions and solubilities). Our conclusions are provided following
the Results section.
Methods
Molecular Fragmentation Strategy
In our DPD model, each individual molecule is represented by a set
of CG beads each of which represents some aspect of the local chemistry;
these are “bonded” into a simplified structural representation
of the original molecule. Each bead is defined to contain a complete
set of bonded atoms (e.g., the chemical groups CH2CH2 in alkanes and CHCH in benzene provide bead types). These
are designed to align with the standard chemical groups and enable
(as far as possible) the set of standard beads to be transferable
(with some exceptions as discussed later). Our beading strategy continues
that begun by Bray et al.[22] where n-alkanes were modeled by linear chains of DPD beads containing
the groups CH3, CH2, and CH2CH2. As with our previous work, the CH2CH2 bead was used in preference to two CH2 beads when either
choice was valid, meaning alkyl chains contain at most a single CH2 placed beside the terminating CH3 bead. We use
the parameters from our previous model to describe the alkane chains
present in the alkylbenzene molecules without modification, with the
exception of the point of connection to the benzene ring. Here, we
introduce a modified CH2 bead (denoted bnCH2; described in more detail below), which provides us
an additional degree of freedom to develop the current model. This
is chemically appropriate also as the first carbon is significantly
influenced by the benzene ring.Benzene is modeled by three
identical beads, each comprising two carbons and connected into a
bonded triangle, defined via the bead type aCHCH.
Substituted ring arrangements consist of combinations of aCHCH and aCHC beads, where the latter allows for
a side chain off the ring (note: aCC would also be
valid but is not included in the study). For example, toluene contains
two aCHCH beads and one aCHC bead.
Additionally, as mentioned above, to allow it to deviate in behavior
from the standard alkane group, the alkyl bead immediately adjacent
to and attached to the benzene ring is given its own distinct bead
type bnCH3 or bnCH2. This combination, comprising the benzene ring and first
carbon off the ring, therefore represents the benzyl structural motif. We limit ourselves to these two bespoke bead types
and did not consider a bnCH2CH2 being attached to the benzene ring as this could overly complicate
the resultant angle distributions, making it difficult to adequately
model using the simple DPD angle potentials. Note that we do not intend
the aCHCH and aCHC beads to be used
with chemistries that significantly perturb the benzene ring, such
as the OH group in phenol, since we believe that this would likely
require different bead types and further parametrization.As
there is already a huge diversity of molecular structures that
comprise one or more alkane groups attached to a benzene ring, we
do not consider structures with branched side chains such as isopropylbenzene,
which would require a branched benzyl bead bnCH,
structures with two side chains off one of the core benzene beads
such as 1,2,3-trimethylbenzene, fused ring structures such as naphthalene,
or structures with fused benzyl groups such as diphenylmethane in
the current study. Nevertheless, bond lengths and bond angles described
in the paper could be used to represent these molecules where indicated. Table shows the representative
schematics of the bead and bond configurations used for the various
molecules in the present study.
Non-Bonded Interactions
The non-bonded
interactions in the model are defined by the standard DPD short-range,
soft, pairwise repulsions given by the pair potentials (for r ≤ R), where β = 1/kBT, r = | r – r | is the separation between beads i and j located at r and r, respectively, A is the repulsion amplitude, and R is the cut-off distance. To fix the cut-off distances, R, we note that different bead types contribute
unequally to the molar volume of the molecules concerned; therefore,
we follow the methodology previously successfully used for surfactants
and the earlier DPD alkane model.[21−24] We first assign R3 for different beads in
proportion to the fragment (bead) molar volume using the Durchschlag
and Zipper rules,[25] taking the molar volume
of a water bead (2 × H2O) as a reference. This fixes
the cut-off distance R between DPD beads
of the same type. Thereafter, we use a simple arithmetic mixing rule to define the cut-off between dissimilar
bead types.The repulsion amplitudes, A, are fitted such that the experimental densities of pure
alkylbenzenes at room temperature (298 K / 25 °C) and atmospheric
pressure (1 atm) are reproduced by DPD simulations (as discussed in
the Results section). For this current study,
we adopt the interaction parameters for alkanes directly from Bray
et al.[22] and did not optimize these further.
The remaining A values were fitted sequentially
as described in the Results section. Tables S1 and S2 of the Supporting Information
(SI) list the experimental densities and melting temperatures of molecules
considered in this work. Table presents the optimized set of A and R values for the model.
Table 2
Repulsion Amplitudes (A) and Cut-off Distances (R) between all Bead Pairs in the Model
bead i
bead j
Aij
Rij
alkanea
CH2CH2
CH2CH2
19.5
1.0740
CH2CH2
(bn)CH3
25.9
1.0155b
CH2CH2
(bn)CH2
12.8
0.9995b
(bn)CH3
(bn)CH3
33.0
0.9570
(bn)CH3
(bn)CH2
19.2
0.9410b
(bn)CH2
(bn)CH2
5.0
0.9250
benzyl
aCHCH
aCHCH
29.5
0.9700
aCHCH
aCHC
29.5
0.9540b
aCHC
aCHC
29.5
0.9380
bnCH3
aCHCH
24.5
0.9635b
bnCH3
aCHC
7.0
0.9475b
bnCH2
aCHCH
5.0
0.9475b
bnCH2
aCHC
9.5
0.9315b
alkane–benzene
CH2CH2
aCHCH
25.9
1.0220b
CH2CH2
aCHCa
8.6c
1.0060b
CH2CH2
aCHCb
15.5c
1.0060b
CH3
aCHCH
33.0
0.9635b
CH3
aCHCa
11.0c
0.9475b
CH3
aCHCb
19.8c
0.9475b
CH2
aCHCH
19.2
0.9475b
CH2
aCHCa
6.4c
0.9315b
CH2
aCHCb
11.5c
0.9315b
Same as Bray et al.[22]
Cross term R obtained by combination rule.
There are two bead types for the
aCHC group: aCHCa for methyl/ethyl side
chain; aCHCb for all other alkyl side
chains.
Same as Bray et al.[22]Cross term R obtained by combination rule.There are two bead types for the
aCHC group: aCHCa for methyl/ethyl side
chain; aCHCb for all other alkyl side
chains.
Bonded Interactions
Molecules are
assembled by connecting together the appropriate DPD beads using pairwise
bonds, augmented by three-body angular potentials to confer additional
rigidity to the structures. For the pairwise bonds we use a harmonic
spring potential where KB = 5000 kBT is the bond (spring) constant, r is the distance between bonded beads i and j, and r0 is the equilibrium bond length. We use this relatively large
value for KB since it prevents large
bond length fluctuations from occurring compared to the more traditional
lower values adopted in the DPD models. This results in better agreement
in bond lengths between these models and atomistic simulations as
discussed previously in Bray et al.[22] Values
for r0 are determined via molecular representations
using the same method as described in Bray et al.[22] (e.g., for the aCHCH–aCHCH bond using a model of benzene based on experimental bond lengths;
see the SI). Table lists the bonded interaction parameters
used in this work.
Table 3
Rationalized Bonded Interaction Parameters
in the Model
bead i
bead j
KBij
r0ij
alkanea
CH2/3
—
(bn)CH2
5000
0.30
CH2CH2
—
(bn)CH2/3
5000
0.35
CH2CH2
—
CH2CH2
5000
0.44
benzyl
aCHC(H)
—
aCHC(H)
5000
0.39
aCHC
—
bnCH2/3
5000
0.35
Same as Bray et al.[22]
Same as Bray et al.[22]Molecular rigidity is enhanced by the inclusion of
an angular three-body
potential between pairs of bonds. We adopt the same harmonic angular
potential used by Smit and collaborators,[26,27], where θ (in radians) is the angle between adjoining bonds and θ0 is the equilibrium angle based on the chemical identities of i, j, and k. The θ0 and KA values for alkanes have been previously calibrated such that the
appropriate length n-alkane freezes at room temperature
(ee Bray et al.[22]). We set the remaining
θ0 based on molecular representations (SI). The angular spring constant, KA (in units rad–2), is
optimized to capture the dominate peak in the angle distribution as
calculated from atomistic simulations (as described in the SI).Figure shows the
effect of varying KA on the angle distributions compared to those calculated from
atomistic simulations and highlights the chosen value for each case. Table lists the angle potential
parameters used in this work. Pragmatic choices were made aromatic
bond angles, such as aCHC(H)-aCHC(H)-aCHC(H) or aCHC(H)-aCHC(H)-bnCHm, to keep the vibrational frequency small
compared to the DPD time step. Nevertheless, the resultant angle distribution
is tight enough for steric differences to come through, for example,
the model displays differences between the isomers of xylene, which
would be hidden by use of a lower angular stiffness such as KA = 5.
Figure 1
Comparison
of the angle distribution function P(θ) obtained
from DPD (dashed/dotted) and MD (solid). The shaded
curve gives the accepted distribution used in this work.
Table 4
Rationalized Angular Potential Parameters
in the Model
bead i
bead j
bead k
KAijk
θ0ijk
alkanea
(bn)CH2/3
—
CH2CH2
—
CH2/3
150
180°
(bn)CH2/3
—
CH2CH2
—
CH2CH2
150
166°
(bn)CH2/3
—
CH2
—
CH2/3
150
100°
(bn)CH2/3
—
CH2
—
CH2CH2
150
125°
CH2CH2
—
CH2CH2
—
CH2CH2
70
180°
CH2CH2
—
CH2
—
CH2CH2
150
146°
benzyl
aCHC(H)
—
aCHC(H)
—
aCHC(H)
30
60°
aCHC(H)
—
aCHC
—
bnCH2/3
150
160°
bnCH2/3
—
aCHC
—
aCHC(H)
150
100°
aCHC
—
bnCH2
—
CH2/3
30
102°
aCHC
—
bnCH2
—
CH2CH2
30
124°
Same as Bray et al.[22]
Comparison
of the angle distribution function P(θ) obtained
from DPD (dashed/dotted) and MD (solid). The shaded
curve gives the accepted distribution used in this work.Same as Bray et al.[22]
General Conditions of the Simulations
DPD simulations were performed using the dl_meso 2.7 simulation package.[28] Periodic boundary
conditions were assumed in all three spatial dimensions. All beads
have a reduced mass of 1 and are charge neutral. It is convenient
to set the DPD unit of length rc = 5.65
Å as in our previous works.[22,23] Although water
does not feature in the present study, this corresponds to treating
water (H2O) supramolecularly with a mapping number Nm = 2, assigning the water bead repulsion range R = rc , and assuming
the reduced water bead density under ambient conditions (see below)
is ρrc3 = 3. We thermostat the model with the standard
DPD pairwise random and dissipative forces[15,29] with damping coefficient γ = 4.5, and range
1.1 rc just above the maximum R used for the conservative forces. The thermal
scale in DPD units is by convention set at kBT = 1. We note that by making the A and R parameters
temperature-dependent (i.e., on the real-world temperature), in principle
this convention can always be retained. Constant pressure simulations
were performed using the Langevin piston implementation of Jakobsen
using barostat parameters τp = 2.0 and γp = 5.0.[30] The combination of kBT = 1 and barostat target
pressure P = 23.7 (in DPD units) furnishes our definition
of “ambient conditions” and corresponds to water beads
with repulsion amplitude A = 25 at the
above reduced water bead density. A time step of Δt = 0.01 was adopted for all simulations, and data was collected every
10 DPD time units (103 time steps) following equilibration.
The analysis code ummap was used to analyze simulation trajectory
files.[31]
Pure Substances and Liquid–Liquid Mixtures
To simulate pure substances and liquid–liquid systems, molecules
were initially configured in random orientations on a cubic lattice
that spans the box dimensions. For the optimization of A and to study liquid–liquid mixtures, simulations
were run for a total of 2 × 103 DPD time units, where
data was collected after the initial 103 DPD time units.
This timescale was deemed sufficiently long for final equilibrium
states to emerge. For a representative subset of molecules, simulations
were also undertaken in larger box sizes to test for finite-size effects
(none were found). The SI provides details
on system sizes and sampling times used.
Solubility Studies of Binary Mixtures Containing
Long Alkanes
Following the setup procedure outlined in Bray
et al.[22] mixtures of solvents (i.e., T,
B, C2B, n-C7, n-C15) and a long alkane (i.e., n-C28, n-C32) were started in a fully
segregated arrangement. Here, a box of size 60 × 20 × 20
DPD units was divided into two subvolumes (along the long axis) with
the relative volumes fixed by the bead fraction, and each of these
subvolumes was filled by randomly placed molecules of the desired
type. Each box contained a total of ∼72,000 beads, initially
leading to a reduce density of 3, which adjusted during NPT simulation.
We have found that this setup allows solid precipitation (of the long
alkane) to occur even at low mole fractions just above the solubility
limit. Half of the beads were assigned to the solvent, and the other
half was assigned to the long alkane. This ensured that for each system
studied, the long alkane was at concentrations well above the solubility
limit.
Identifying Waxes
The system is said
to have solidified into a wax if it has high structural order and
low mobility. To measure the degree of structural order, a unit vector n is defined for each molecule
as the normalized vector separation between the beads at the ends
of the alkyl side chain of the molecule (e.g., the first non-benzyl
bead and final “tail” bead of the alkyl chain); this
unit vector is oriented for definiteness and without loss of generality
such that n · e ≥ 0, where e is the unit vector directed along the z axis. A local director (vector) D is then defined for each molecule by averaging the
orientation vectors n for
molecules with midpoints lying within a sphere of radius 5 r (∼28 Å) of the midpoint of the
target molecule. Finally, for each molecule, cos ϕ = n · D/ | D| is computed, and in terms of this, an orientational
order parameter based on the usual Legendre polynomial is extracted: S = ⟨P2( cos ϕ)⟩
= ⟨(3cos2ϕ – 1)/2⟩. The order
parameter obeys 0 ≤ S ≤ 1, with S ≈ 0 in an isotropic liquid and S → 1 as the molecules become perfectly aligned; the material
is said to exhibit orientational order when S ≳
0.5.We use the mean square displacement (MSD) to assess molecular
mobility. This is calculated from the bead coordinates as ⟨|r(t + Δt) – r(t)|2⟩, where r(t) is the position of the ith bead at time t after “unwrapping”
the periodic boundary conditions. For concreteness, we report the
MSD at Δt = 500 DPD time units (hereafter MSD@500).
Estimating Solubility
For binary
solvent + solute mixtures, the solute should precipitate out of the
solution when the total added amount goes above the solubility limit
for that solvent. This corresponds to the presence in the equilibrium
phase diagram of a two-phase region in which a saturated solution
at the solubility limit coexists with the precipitated material. Thus,
to obtain an estimate for the solubility limit, we simply need to
find the solvent-rich phase in a simulated phase coexistence and measure
its composition. To this end, we adopt a method developed by Anderson
et al.[21] to calculate the octanol–water
partition coefficients.To do this, we measure from the simulation
the time average local concentration of each molecule by dividing
the simulation box evenly along the long axis into slabs of thickness
≈ 2 rc and computing the concentration
for all components in each slab. Next, the gradient profile is calculated,
and the bulk phase domains are identified as the contiguous regions
where the absolute gradient is less than a cut-off that we set equal
to the standard deviation of the set of calculated gradient values.
Note that this may result in more than two “bulk” phases
being identified due to grain boundaries in the solid phase caused
by changes in molecule orientation and packing of the long alkane.
Nevertheless, the solvent-rich phase is always the one containing
the highest concentration of solvent. Having identified the position
of this phase, the average concentrations in this phase domain are
then extracted and converted to weight fractions, wf, and then volume fractions, ϕ, usingHere, V is the molar volume, and M is the molar mass of each molecular component i, where solvent is i = 1 and solute i = 2.[32]
Results
Liquid Densities for Benzene and Benzene +
Alkane Mixtures
Repulsion amplitudes, A, for benzene (aCHCH beads self-interaction)
and between benzene and alkanes (aCHCH interaction
with CH3,CH2, and CH2CH2 beads) were obtained by matching the density for benzene, and four
mixtures of benzene (B) + alkane (n-Cn) using the experimental data in Teja and Rice.[33] We achieved good agreement between the model and experimental
densities, obtaining a difference of only 0.15% for benzene. While
across the range of concentrations of benzene + alkane mixtures, we
obtained root mean square deviation (RMSD) of 0.0037 (R2 = 0.997) for benzene + hexane (B + n-C6), 0.0026 (R2 = 0.998)
benzene + heptane (B + n-C7), 0.0042 (R2 = 0.992) benzene + decane (B + n-C10) and 0.0055 (R2 = 0.968)
benzene + hexadecane (B + n-C16), respectively. Figure a shows the comparison
between the model prediction and experiment for different mole fractions
of benzene for the benzene-alkane mixtures studied.
Figure 2
Density as a function
of mole fraction for binary liquid mixtures.
Dashed lines with black points are for experimental values, and colored
points are for DPD model mixtures.
Density as a function
of mole fraction for binary liquid mixtures.
Dashed lines with black points are for experimental values, and colored
points are for DPD model mixtures.
Evidence for the Need to Capture Differences
in Ring Behavior
It may seem reasonable to assume that with
the above parameters specified, it is then possible to build the other
members of the alkylbenzene family, e.g., toluene, ethylbenzene, hexylbenzene,
etc., and get the liquid density correct. These molecules can be built
by attaching alkane side chains off the benzene ring via first swapping
the relevant aCHCH bead to aCHC,
then attaching the alkane chain, starting with a CH2 (or
CH3 for a single methyl group such as toluene) followed
by intermediate CH2CH2 beads and terminated
by either by a CH3 bead for an even-length chain or by
a CH2-CH3 bead for an odd-length chain. Some
schematics of such molecules are shown in Table . In the above cases, the aCHC bead has the same interaction parameters as benzene.To
test this approach, we built models of toluene (T), the symmetrically
substituted 1,3,5-trimethylbenzene known as mesitylene (M), and the
alkylbenzenes (CB): ethylbenzene (C2B) through to triacontylbenzene (C36B) (SI). We calculated the model predictions for
the densities for these molecules as described in the previous paragraph
and found poor agreement with the experiment, producing a RMSD of
0.03704 but with R2 = – 32.4. The
crosses (green) of Figure show how the densities predicted using this “simple”
initial model deviate from the experimental values shown as solid
circles and squares. As it is set up, there is excellent agreement
for benzene, but it is not possible to fit with similar accuracy toluene[34] and mesitylene,[35] where the disagreement between the model and the experiment is 6.27
and 14%, respectively (SI). This agreement
improves for alkylbenzenes but still remains around the 2% mark at
longer alkyl lengths (even at side-chain lengths of C18). Furthermore, the alkylbenzene model densities increase monotonically
with increasing carbon side-chain length (more like a modified alkane
family) rather than decreasing as actually seen in the experiment;
this is the cause of the negative R2 value.
Hence, we conclude that some of the parameters must be different from
those needed for benzene or alkanes.
Figure 3
Liquid-phase densities of alkylbenzenes
(CB) for various model versions including
the final choice s = 0.6. The dashed line in the
right-hand plot signifies
perfect agreement with experiment.
Liquid-phase densities of alkylbenzenes
(CB) for various model versions including
the final choice s = 0.6. The dashed line in the
right-hand plot signifies
perfect agreement with experiment.An obvious starting place would be to assume that
the interactions
of an aCHC bead are simply different to those of
an aCHCH bead. However, this turns out to be insufficient
as when we attempted to change only the aCHC···aCHC bead pair interaction (dropping its value down to as
low as A = 1 ), we found only a minor
improvement on the density for mesitylene and the error remained above
11%. Hence, we found that changing the ring parameters simply shifts
the density and does not address the trend behavior with the side-chain
length of the alkybenzenes. Instead, the bonded CH2 or
CH3 bead adjacent to the aCHC needs to
treated differently to standard alkanes, i.e., it should be a “specialized”
bead type that captures the unique geometry and reflects the benzyl
nature of the chemistry, which we will denote using the bn prefix.
Liquid-Phase Densities of Methylbenzene Derivatives
Parameters for methylbenzene were determined by matching the density
of mesitylene, o-xylene, p-xylene, m-xylene, and toluene to set the interactions between bnCH3, aCHC, and aCHCH. Experimental data was obtained from Asfour et al.,[34] Chevalier et al.,[36] and Al-Kandary et al.[35] The use of an aCHC bead to represent a benzene bead with an attached side
chain allows the interaction parameters to be different for bnCH3···aCHC
and bnCH3···aCHCH. For simplicity, we kept the repulsion amplitudes A for aCHC and aCHCH the same as benzene. However, tests indicate that deviating
from this assumption has only minor affects, as discussed in the preceding
section. Similarly, benzyl CH3 behaves as alkyl CH3 with respect to alkanes. Despite the difference in R values for aCHCH and aCHC, we kept the geometry of the benzene ring unchanged
and independent of its constituent beads. In the real molecular representation
(e.g., the CG representation of the aromatic ring of benzene, toluene,
xylene, etc.), the actual variation in bond length and angle is small
(within 0.11 Å and 5°, respectively). The benzyl bnCH3 interactions with the benzene ring are
fitted by first obtaining bnCH3···aCHC repulsion amplitude using density data from mesitylene
and then fitting bnCH3···aCHCH interaction using the data of toluene to obtain an
agreement in densities between model and experiment of 0.01 and 0.22%,
respectively. The performance of these parameters were confirmed against
the variants of xylene, obtaining −0.98, −0.01, and
0.22% for p-xylene, m-xylene, and o-xylene, respectively, so that m-xylene
gives the best agreement while p-xylene gives the
worst (yet still being close). This is possibly due to similarity
in methyl placement between mesitylene and m-xylene,
which p-xylene does not share, and better agreement
could be obtained by fitting it against structural isomers of mesitylene
such as 1,2,4-trimethylbenzene and 1,2,5-trimethylbenzene. Note there
are two ways to assign beads to the structure of o-xylene since the methyl groups are attached to adjacent carbons
in the ring: the first is to have each methyl attached to a separate aCHC bead as discussed here; the second is to attach both
methyl groups to the same aCC bead (not discussed).Figure shows a
comparison between the model densities and experimental values for
these small benzyl molecules. These models are able to capture differences
between the different molecules and isomers, which would not be possible
if a simpler model was used.
Figure 4
Liquid-phase densities for benzene, methylbenzene,
and ethylbenzene
derivatives. Black points are for experimental values, and colored
points are for DPD models.
Liquid-phase densities for benzene, methylbenzene,
and ethylbenzene
derivatives. Black points are for experimental values, and colored
points are for DPD models.
Liquid-Phase Densities of Binary Mixtures
of Methylbenzene and Alkanes
To obtain the repulsion amplitudes
between the aCHC and alkane beads, we modeled four
binary mixtures: toluene + n-octane (T + n-C8); toluene + n-hexadecane
(T + n-C16); p-xylene
+ n-heptane (p-X + n-C7), and o-xylene + n-tetradecane (o-X + n-C14) using the experimental data from Asfour et al.,[34] Yang et al.,[37] and Chevalier
et al.[36] Here, we assumed that the bnCH3 bead present in the aromatics interacts
with the alkanes (e.g., CH2CH2, CH2, and CH3) in the same way as the alkyl CH3.We found that the remaining interactions of the aCHC bead with the alkane beads should not share the same values as
the aCHCH bead, for by doing so would underpredict
the density by up to 1.39% (T + n-C16)
and 1.56% (T + n-C8). Instead, we found
that a good fit can be obtained by scaling the relevant repulsion
amplitudes by a factor s = 1/3 (i.e., A → s A for
the relevant bead pairs). These parameters are marked aCHC in Table . Across the range of concentrations, we obtained RMSD values
of 0.0031 (R2 = 0.988) for T + n-C16, 0.0005 (R2 = 0.999) for T + n-C8, 0.0095 (R2 = 0.971) for p-X + n-C7, and 0.0019 (R2 = 0.993) o-X + n-C14, respectively. Figure b,d compares the model density predictions with experiment for these
mixtures.
Liquid-Phase Densities of Ethylbenzene Derivatives
and Mixtures with Alkanes
A similar procedure was used to
obtain the repulsion amplitudes between the benzyl bead bnCH2 and the aCHC(H) bead for side chains
of a carbon length of 2 (i.e., −bnCH2-CH3). Experimental data was obtained from Asfour et al.[34] and Dreisbach.[38] The bnCH2···aCHC
repulsion amplitude was obtained using density data from 1,3,5-triethylbenzene,
and then the bnCH2···aCHCH repulsion amplitude was fitted using the data of ethylbenzene
to obtain an agreement in densities between model and experiment of
−0.07 and −0.22%, respectively. The aCHC···CH3 interaction is the same as used
above. We validated these parameters by calculating the pure densities
for the structural isomers of diethylbenzene, obtaining −0.95,
−0.38, and 1.11% for p-diethylbenzene, m-diethylbenzene, and o-diethylbenzene,
respectively. We also tested against structural isomers of ethyltoluene
(a molecule containing both the bnCH2 and bnCH3 bead) and obtained −0.78, 0.22,
and 1.06% for p-ethyltoluene, m-ethyltoluene,
and o-ethyltoluene, respectively.From this
parameterization, we have sufficient information to explore liquid
mixtures of ethylbenzene and alkanes. Specifically, we have explored
binary mixtures of (i) ethylbenzene + n-octane (C2B + n-C8) and (ii) ethylbenzene
+ n-hexadecane (C2B + n-C16), and compared them to experimental data taken from
Asfour et al.[34] Again, our simulated results
perform well when compared to the experimental data: we achieve RMSD
values of 0.00223 (R2 = 0.998) for C2B + n-C8 and 0.00272 (R2 = 0.991) for C2B + n-C16, respectively. Figure c shows the comparison between the model density predictions
and the experiment for these mixtures.
Evidence for the Effect of the Alkyl Side
Chain on the Benzene Ring
At this point, we now appear to
have the parameters for all of the DPD bead types required to calculate
the densities of the alkylbenzene family, from propylbenzene (C3B) up to triacontylbenzene (C30B). When comparing
the calculated densities against the experimental data from Dreisbach,[38] these results fell within 2% of the experimental
values (see the SI for individual data).
However, the overall fit of the date gives an RMSD value of 0.00802
and R2 = – 5.14, which indicates
that the trend was poor (see points of s = 1/3 in Figure (right), where there
is a clear bend away from the dashed line that indicates perfect agreement).
Note that while the agreement is poor, this is still better than the
simple model described earlier but worse than assuming all densities
are take the mean values (see points of the simple model in Figure ).
Liquid Densities of Longer-Chain Alkylbenzenes
As a consequence, we chose to re-parameterize the aCHC···alkane interactions, making them more repulsive,
and instead use a scale factor of s = 0.6 compared
to the aCHCH··· alkane interactions.
This resulted in the parameters marked aCHC in Table .
These changes result in a significantly improved fit with a maximum
error of less than 0.5% per CB (n > 2), an overall RMSD of 0.00233, and R2 = 0.999. However, when we try the new parameters with
ethylbenzene (C2B), we underestimate the density by −0.86%
compared to the experiment, which is far worse than the fit obtained
using the s = 1/3 parameters. This suggests that
the aCHC bead type from ethylbenzene should be treated
differently from that needed for CB (n > 2).Figure shows how well the alkylbenzene family (n > 2) fits the experimental data when using scale factor s = 1.0 (as used for benzene), 0.6 (as refined for alkylbenzene),
and 1/3 (as used for methyl/ethylbenzene) and in the simple model.
Here, we can see that the models with s = 0.6 fit
much better than the others (raw data given in the SI).We believe the requirement for the two variations
of the aCHC beads (i.e., aCHCa and aCHCb) is due to the severe
overlap that occurs
between the bonded beads in the DPD coarse-grained model. Here, the
effective distance of non-bonded interaction is of the order r = 5.65 Å (as suggested by R values), but the equilibrium bond lengths are typically
≲ 0.5 r, which means that when
another non-bonded bead moves close to one of these beads, it is subjected
to the combined repulsion from the bead in question and its nearest
bonded neighbors (in atomistic models, this effect is weaker or avoided
since the bond lengths are typically much bigger than the non-bonded
interaction cut-off distance). When the repulsion amplitudes for the
first/second neighbor beads are large (such as for the methyl group),
the contribution to the overall repulsion is stronger and the combined
effect is more pronounced. Thus if the net repulsion should be similar
between common groups (e.g., aCHC···CH3) the repulsion amplitudes for these groups must compensate
those from the surrounding neighbors. This can be thought of as effectively
capturing the many-body contributions of the surrounding bonded particles
within a pairwise potential model.
Freezing Transition of Pure Alkylbenzenes
We next turn our attention to the freezing transition of pure alkylbenzenes.
Experimentally, it is found that at room temperature freezing occurs
between C15B to C16B (i.e., the former is liquid
at room temperature, whereas the latter is a waxy solid). Adopting
the parameterization we have developed in the present study thus far,
we test the capability of the models to reproduce this. The final
physical state of the simulated system is assessed by measuring the
MSD at 500 time units and orientational order parameter, S. Results are shown in Figure . When the MSD sharply drops toward zero, the system is deemed
to have solidified. Figure shows that this takes place between C17B and C18B, two units longer in carbon chain length than expected
experimentally. The high value of S indicates that
crystalline order also prevails, and this is verified by visual inspection
(shown for C30B in Figure a).
Figure 5
Physical state of alkybenzene (CB)
family: (a) snapshots of the system, (b) mean square displacement
(MSD@500), and orientational order parameter S.
Physical state of alkybenzene (CB)
family: (a) snapshots of the system, (b) mean square displacement
(MSD@500), and orientational order parameter S.To test for finite-size effects, we examined three
different simulation
box sizes for the systems C15B to C18B consisting
of 600, 1200, and 2400 molecules, respectively. We found no significant
differences in the results (SI). We additionally
determined that the liquid nature of C17B remains when
simulations are significantly extended (up to 105 DPD time
units) beyond our standard protocol.
Differences in the Solubility of Waxy Alkanes
in a Range of Solvents
Starting from an initially segregated
random state (i.e., each molecule type placed randomly in each half
of the box), we were able to estimate the solubility of n-C28 and n-C32 at room temperature
in the solvents benzene, toluene, mesitylene, and ethylbenzene. Reference
experimental data was taken from Haulait-Pirson et al.[32] For comparison, we also measured the solubility
of alkane mixtures n-C15 + n-C20, n-C7 + n-C28, and n-C7 + n-C32.Figure shows the weight fraction of heavy alkane (wf2) in the solvent phase as a function of time. In the initial stages
of the simulation some of the heavy alkane dissolves into the solvent,
leading to a rapid increase of wf2 from a starting point
of zero, while the remainder solidifies and becomes ordered and static.
We found that in most cases, it took approximately 2.5 × 105 DPD time units before the solute concentration reached equilibrium
(i.e., a constant concentration of heavy alkane in solvent) and around
4.5 × 105 DPD time units for the n-C15 + n-C20 system because
the relatively high solubility of the wax (n-C20) in the solvent (n-C15) means
that this system takes considerably longer to equilibrate. We sampled
the solute volume fraction, ϕ2, over the last 1.5
× 104 DPD time units to obtain final estimates of
the equilibrium solubility, and these results are compared to the
experiment in Table . The solubilities of the sampled heavy alkanes in most of the solvents
is small (< 0.1), and as such (given the simulated volume), only
a small number of molecules may be present in the solvent phase at
any one time. Thus, it may be difficult to match accurately experiments
from the simulation. Nevertheless, the value for n-C7 + n-C28 is consistent
with that found in our earlier study[22] and
corresponds to a mole fraction of 0.027, where experimentally it is
around 0.025. We find qualitatively these models rank the solubilities
in the correct order, with the longer alkanes being more insoluble
than the shorter ones, and all are within a factor of 2 of the experimental
value. Some of the results give very close matches, such as M + n-C32. The worst match C2B + n-C32 is 6 times too small. Overall, this method
shows promise for directly predicting solubilities from the simulation.
Figure 6
Solubility
of waxy alkanes in aromatic solvents: (a) snapshots
of final state of three binary mixtures showing only n-C28 and (b) weight fraction of the waxy alkane found
in the solvent phase as a function of simulation time. The vertical
line indicates the point at which steady state is assumed (2.5 ×
105 DPD time units) except for n-C15 + n-C20, which is taken to be
4.5 × 105 DPD time units.
Table 5
Predicted and Experimental Solubilities
for Waxy Alkanes in Aromatic Solvents, by Volume Fractiona
solvent +
solute
ϕexpt[32]
ϕmodel
rel.
error
n-C15 + n-C20
0.405
0.2994 (0.0055)
0.26
n-C7 + n-C28
0.065
0.0853 (0.0059)
0.31
n-C7 + n-C32
0.020
0.0372 (0.0066)
0.86
B + n-C28
0.0585
0.0127 (0.0012)
–0.14
T + n-C28
0.0738
0.1569 (0.0022)
–0.78
M + n-C28
0.0669
0.0349 (0.0013)
–0.48
C2B + n-C28
0.0547
0.0285 (0.0413)
–0.48
B + n-C32
0.0126
0.0065 (0.0020)
–0.48
T + n-C32
0.0177
0.0308 (0.0045)
0.74
M + n-C32
0.0184
0.0170 (0.0042)
0.78
C2B + n-C32
0.0130
0.0021 (0.0005)
–1.01
Standard deviation given in parentheses.
Solubility
of waxy alkanes in aromatic solvents: (a) snapshots
of final state of three binary mixtures showing only n-C28 and (b) weight fraction of the waxy alkane found
in the solvent phase as a function of simulation time. The vertical
line indicates the point at which steady state is assumed (2.5 ×
105 DPD time units) except for n-C15 + n-C20, which is taken to be
4.5 × 105 DPD time units.Standard deviation given in parentheses.
Behavior of Linear Diphenylalkanes
Having successfully modeled the behavior of alkylbenzenes, we finally
studied diphenylalkanes of the form BCB as a kind of stress-test of the model. We examined diphenylmethane
(BCB) and dibenzyl (BC2B) to 1,18-diphenyloctadecane (BC18B). No adjustment was made to the DPD interaction parameters
when running these simulations. All of these materials are experimentally
observed to be solid at room temperatures due to their high melting
points. However, none of our models solidified (SI), suggesting a limitation of the current DPD methodology,
specifically, that the solidification seen so far is waxy in nature
and driven by the long linear alkyl chain length.In the SI, we considered three areas of improvement
for the model: additional restriction of molecular conformations by
introduction of dihedral constraints, extending the model to include
electrostatic contributions (in this case introducing a dipole on
the aromatic ring), and introducing chemical specificity into the
pairwise thermostat by making γ dependent on chemical identity (this last one should leave the equilibrium
state untouched but may facilitate its appearance by promoting certain
nucleation and growth pathways).We find that each is able to
influence the MSD measured for the
molecule, but spatial ordering is largely unaffected until a small
MSD was observed, a feat only observed when using electrostatics.
Hence, we conclude that the crystallization of the shorter-length
diphenylalkane molecules may require the inclusion of electrostatic
forces on the benzene ring that encourage regular alignments between
molecules (such as introducing a dipole moment to the aromatic ring),
but we do not extensively test this in the article. Alternatively,
it may be possible to represent the directionality of the short-ranged
electrostatic interactions by short-range orientational interactions
or similar attractive forces.As fine tuning such a model would
require development of improved
electrostatic models for DPD (incorporating partial charges and dipoles,
as discussed in our other work on static charges in surfactants[23]), the development of this concept is considered
beyond the scope of the current article.
Discussion and Conclusions
Studying
the alkylbenzene family has enabled us to explore two
key observations that can be made from observing the DPD literature,
namely that authors appear to prefer to adopt models with a limited
number of bead types and that partial charges are not included in
DPD models. This may lie in the origins of DPD where beads represented
large fragments of molecules (e.g., blocks in a block co-polymer),
but as the DPD literature has developed, the resolution has increased
significantly (where a bead will often represent a chemical group).
We have shown that the DPD model is able to achieve a high level of
accuracy but only when a sufficient amount of detailed chemistry is
captured such as realistic bond length and bond angle constants. Furthermore,
we have shown that at this relatively fine level of coarse-graining,
we cannot adopt a simple molecular fragmentation approach (i.e., universal
bead types), but instead, we require an approach similar to the more
sophisticated atomistic models wherein the bead interactions are dependent
on both the specific molecular fragments and the neighboring chemistry.
For example, we have demonstrated that a benzene ring cannot be modeled
using only a single bead type if substitutions are to be made onto
the ring. That is to say, the bead types used for benzene (e.g., aCHCH bead, in this study) must be different to those used
for the phenyl/benzyl group (aCHC) to reflect the
local chemical environment. By extension, several variants of the aCHC bead type exist depending on the length of the alkyl
side chain (or other groups) such that the use of a single bead type
on its own cannot correctly match all the data.This begs the
question: Why are specialized beads necessary? We
believe that the answer lies in a point already touched upon in discussing
the liquid densities of longer-chain alkylbenzenes, namely that with
the chosen degree of coarse-graining, the typical bond lengths R0 are ≲ 0.5 rc , much smaller than the typical non-bonded interaction ranges R ≈ rc.
Thus, the actual repulsion between beads can be much stronger than
that expected from the “bare” pairwise interactions
because the bonded neighbors also overlap. By using specialized beads,
we are able to compensate for this many-body effect.As discussed
in our work on pure alkanes,[22] an alternative
could be to adopt a multi-component many-body DPD
approach and allow the pairwise interactions to become dependent on
the local environment.[15,39,40] However, such an approach introduces a proliferation of parameters,
which is not obviously advantageous compared to adding specialized
bead types. Of course, with many-body DPD, one also has the potential
to reproduce vapor–liquid phase coexistence,[41−45] which is not possible in the present class of models
with purely repulsive non-bonded interactions.[46]Using appropriate bond and angle constraints, we
are able to capture
the freezing transition as a function of chain length (i.e., wax formation
at room temperature) for the longer alkylbenzenes containing one benzyl
group per molecule. However, the freezing of diphenylalkanes containing
two benzyl groups per molecule proves difficult to reproduce. This
suggests that the model is only able to capture ordering caused by
geometrical packing constraints such as that driven by alkyl backbone
alignment, and some crucial additional physics is currently missing
from the model.We postulate that this limitation may be overcome
by some consideration
of the electrostatics (dipole and π–π attractions)
of the benzyl ring, which is not captured in the current model (which
is also true of other existing coarse-grain models that do not include
electrostatics). Incorporating explicit electrostatics into the model
would provide its own challenges as decisions would need to be made
on the best way to distribute the charge across the aromatic ring
(which may prove to be unique to the molecule structure, hence limiting
the transferability of bead types between molecules) and the choice
of electrostatic representation (i.e., the use of a global relative
permittivity, typical in DPD, is problematic as the value depends
on the medium such that oil is very different to water and thus limits
transferability across formulations). Additionally, the use of electrostatics
would significantly increase the computational cost of the simulation.
As such, it may be better to instead use a short-range conservative
attractive force or orientational interaction to mimic the directionality
of the short-range electrostatic interaction.Nevertheless,
the effect is much less prevalent in the linear alkylbenzenes
(i.e., with only one aromatic group), which are less dominated by
ring interactions, and here, the model does a better job at replicating
wax formation as a function of chain length since it deviates from
reality by only two carbons. Furthermore, we anticipate similar difficulties
in matching melting points for other polar(izable) molecules. Therefore,
a parameterization strategy that simultaneously fits the repulsion
amplitudes, A, plus any partial charges
to, inter alia, liquid and solid phase densities,
dipole moments, and melting points may be required. Such an approach
would obviously benefit from the judicious deployment of machine learning
methods and automated fitting algorithms.
Authors: Richard L Anderson; David J Bray; Annalaura Del Regno; Michael A Seaton; Andrea S Ferrante; Patrick B Warren Journal: J Chem Theory Comput Date: 2018-04-13 Impact factor: 6.006
Authors: Chi-cheng Chiu; Russell DeVane; Michael L Klein; Wataru Shinoda; Preston B Moore; Steven O Nielsen Journal: J Phys Chem B Date: 2010-05-20 Impact factor: 2.991