Literature DB >> 17713943

Transferable potentials for phase equilibria. 9. Explicit hydrogen description of benzene and five-membered and six-membered heterocyclic aromatic compounds.

Neeraj Rai1, J Ilja Siepmann.   

Abstract

The explicit hydrogen version of the transferable potentials for phase equilibria (TraPPE-EH) force field is extended to benzene, pyridine, pyrimidine, pyrazine, pyridazine, thiophene, furan, pyrrole, thiazole, oxazole, isoxazole, imidazole, and pyrazole. While the Lennard-Jones parameters for carbon, hydrogen (two types), nitrogen (two types), oxygen, and sulfur are transferable for all 13 compounds, the partial charges are specific for each compound. The benzene dimer energies for sandwich, T-shape, and parallel-displaced configurations obtained for the TraPPE-EH force field compare favorably with high-level electronic structure calculations. Gibbs ensemble Monte Carlo simulations were carried out to compute the single-component vapor-liquid equilibria for benzene, pyridine, three diazenes, and eight five-membered heterocycles. The agreement with experimental data is excellent with the liquid densities and vapor pressures reproduced within 1 and 5%, respectively. The critical temperatures and normal boiling points are predicted with mean deviations of 0.8 and 1.6%, respectively.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 17713943     DOI: 10.1021/jp073586l

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  11 in total

1.  A Kirkwood-Buff force field for the aromatic amino acids.

Authors:  Elizabeth A Ploetz; Paul E Smith
Journal:  Phys Chem Chem Phys       Date:  2011-09-19       Impact factor: 3.676

Review 2.  Metal Ion Modeling Using Classical Mechanics.

Authors:  Pengfei Li; Kenneth M Merz
Journal:  Chem Rev       Date:  2017-01-03       Impact factor: 60.622

3.  Combining MOSCED with molecular simulation free energy calculations or electronic structure calculations to develop an efficient tool for solvent formulation and selection.

Authors:  Courtney E Cox; Jeremy R Phifer; Larissa Ferreira da Silva; Gabriel Gonçalves Nogueira; Ryan T Ley; Elizabeth J O'Loughlin; Ana Karolyne Pereira Barbosa; Brett T Rygelski; Andrew S Paluch
Journal:  J Comput Aided Mol Des       Date:  2017-01-28       Impact factor: 3.686

4.  Predicting cyclohexane/water distribution coefficients for the SAMPL5 challenge using MOSCED and the SMD solvation model.

Authors:  Sebastian Diaz-Rodriguez; Samantha M Bozada; Jeremy R Phifer; Andrew S Paluch
Journal:  J Comput Aided Mol Des       Date:  2016-08-26       Impact factor: 3.686

5.  Destruction of chemical warfare agents using metal-organic frameworks.

Authors:  Joseph E Mondloch; Michael J Katz; William C Isley; Pritha Ghosh; Peilin Liao; Wojciech Bury; George W Wagner; Morgan G Hall; Jared B DeCoste; Gregory W Peterson; Randall Q Snurr; Christopher J Cramer; Joseph T Hupp; Omar K Farha
Journal:  Nat Mater       Date:  2015-03-16       Impact factor: 43.841

6.  Molecular recognition effects in atomistic models of imprinted polymers.

Authors:  Eduardo M A Dourado; Carmelo Herdes; Paul R van Tassel; Lev Sarkisov
Journal:  Int J Mol Sci       Date:  2011-07-28       Impact factor: 5.923

7.  Adsorption and molecular siting of CO2, water, and other gases in the superhydrophobic, flexible pores of FMOF-1 from experiment and simulation.

Authors:  Peyman Z Moghadam; Joshua F Ivy; Ravi K Arvapally; Antonio M Dos Santos; John C Pearson; Li Zhang; Emmanouil Tylianakis; Pritha Ghosh; Iain W H Oswald; Ushasree Kaipa; Xiaoping Wang; Angela K Wilson; Randall Q Snurr; Mohammad A Omary
Journal:  Chem Sci       Date:  2017-03-10       Impact factor: 9.825

8.  A metal-organic framework for efficient water-based ultra-low-temperature-driven cooling.

Authors:  Dirk Lenzen; Jingjing Zhao; Sebastian-Johannes Ernst; Mohammad Wahiduzzaman; A Ken Inge; Dominik Fröhlich; Hongyi Xu; Hans-Jörg Bart; Christoph Janiak; Stefan Henninger; Guillaume Maurin; Xiaodong Zou; Norbert Stock
Journal:  Nat Commun       Date:  2019-07-09       Impact factor: 14.919

9.  Excess chemical potential of thiophene in [C4MIM] [BF4, Cl, Br, CH3COO] ionic liquids, determined by molecular simulations.

Authors:  Marco V Velarde-Salcedo; Joel Sánchez-Badillo; Marco Gallo; Jorge López-Lemus
Journal:  RSC Adv       Date:  2021-09-02       Impact factor: 3.361

10.  In Silico Determination of Gas Permeabilities by Non-Equilibrium Molecular Dynamics: CO2 and He through PIM-1.

Authors:  Hendrik Frentrup; Kyle E Hart; Coray M Colina; Erich A Müller
Journal:  Membranes (Basel)       Date:  2015-03-10
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.