Literature DB >> 35796984

Preparation of RNA Polymerase Complexes for Their Analysis by Single-Particle Cryo-Electron Microscopy.

Michael Pilsl1, Florian B Heiss1, Gisela Pöll1, Mona Höcherl1, Philipp Milkereit1, Christoph Engel2.   

Abstract

Recent technological progress revealed new prospects of high-resolution structure determination of macromolecular complexes using cryo-electron microscopy (cryo-EM) . In the field of RNA polymerase (Pol) I research, a number of cryo-EM studies contributed to understanding the highly specialized mechanisms underlying the transcription of ribosomal RNA genes . Despite a broad applicability of the cryo-EM method itself, preparation of samples for high-resolution data collection can be challenging. Here, we describe strategies for the purification and stabilization of Pol I complexes, exemplarily considering advantages and disadvantages of the methodology. We further provide an easy-to-implement protocol for the coating of EM-grids with self-made carbon support films. In sum, we present an efficient workflow for cryo-grid preparation and optimization, including early stage cryo-EM screening that can be adapted to a wide range of soluble samples for high-resolution structure determination .
© 2022. The Author(s).

Entities:  

Keywords:  Grid preparation; Negative staining; Plunge freezing; Preparation of transcription complexes; RNA polymerase I; Single-particle cryo-electron microscopy

Mesh:

Substances:

Year:  2022        PMID: 35796984     DOI: 10.1007/978-1-0716-2501-9_6

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  40 in total

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Authors:  Ewen Callaway
Journal:  Nature       Date:  2015-09-10       Impact factor: 49.962

Review 2.  Challenges and opportunities in cryo-EM single-particle analysis.

Authors:  Dmitry Lyumkis
Journal:  J Biol Chem       Date:  2019-02-25       Impact factor: 5.157

Review 3.  How Good Can Single-Particle Cryo-EM Become? What Remains Before It Approaches Its Physical Limits?

Authors:  Robert M Glaeser
Journal:  Annu Rev Biophys       Date:  2019-02-20       Impact factor: 12.981

4.  Biochemistry. The resolution revolution.

Authors:  Werner Kühlbrandt
Journal:  Science       Date:  2014-03-28       Impact factor: 47.728

5.  Single particle electron cryomicroscopy: trends, issues and future perspective.

Authors:  Kutti R Vinothkumar; Richard Henderson
Journal:  Q Rev Biophys       Date:  2016-07-22       Impact factor: 5.318

Review 6.  Advances in the field of single-particle cryo-electron microscopy over the last decade.

Authors:  Joachim Frank
Journal:  Nat Protoc       Date:  2017-01-05       Impact factor: 13.491

7.  RNA polymerase I-Rrn3 complex at 4.8 Å resolution.

Authors:  Christoph Engel; Jürgen Plitzko; Patrick Cramer
Journal:  Nat Commun       Date:  2016-07-15       Impact factor: 14.919

8.  Structure of the initiation-competent RNA polymerase I and its implication for transcription.

Authors:  Michael Pilsl; Corinne Crucifix; Gabor Papai; Ferdinand Krupp; Robert Steinbauer; Joachim Griesenbeck; Philipp Milkereit; Herbert Tschochner; Patrick Schultz
Journal:  Nat Commun       Date:  2016-07-15       Impact factor: 14.919

Review 9.  Unravelling biological macromolecules with cryo-electron microscopy.

Authors:  Rafael Fernandez-Leiro; Sjors H W Scheres
Journal:  Nature       Date:  2016-09-15       Impact factor: 49.962

Review 10.  The cryo-EM resolution revolution and transcription complexes.

Authors:  Jonas Hanske; Yashar Sadian; Christoph W Müller
Journal:  Curr Opin Struct Biol       Date:  2018-07-14       Impact factor: 6.809

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