Literature DB >> 27658821

Single particle electron cryomicroscopy: trends, issues and future perspective.

Kutti R Vinothkumar1, Richard Henderson1.   

Abstract

There has been enormous progress during the last few years in the determination of three-dimensional biological structures by single particle electron cryomicroscopy (cryoEM), allowing maps to be obtained with higher resolution and from fewer images than required previously. This is due principally to the introduction of a new type of direct electron detector that has 2- to 3-fold higher detective quantum efficiency than available previously, and to the improvement of the computational algorithms for image processing. In spite of the great strides that have been made, quantitative analysis shows that there are still significant gains to be made provided that the problems associated with image degradation can be solved, possibly by minimising beam-induced specimen movement and charge build up during imaging. If this can be achieved, it should be possible to obtain near atomic resolution structures of smaller single particles, using fewer images and resolving more conformational states than at present, thus realising the full potential of the method. The recent popularity of cryoEM for molecular structure determination also highlights the need for lower cost microscopes, so we encourage development of an inexpensive, 100 keV electron cryomicroscope with a high-brightness field emission gun to make the method accessible to individual groups or institutions that cannot afford the investment and running costs of a state-of-the-art 300 keV installation. A key requisite for successful high-resolution structure determination by cryoEM includes interpretation of images and optimising the biochemistry and grid preparation to obtain nicely distributed macromolecules of interest. We thus include in this review a gallery of cryoEM micrographs that shows illustrative examples of single particle images of large and small macromolecular complexes.

Entities:  

Year:  2016        PMID: 27658821     DOI: 10.1017/S0033583516000068

Source DB:  PubMed          Journal:  Q Rev Biophys        ISSN: 0033-5835            Impact factor:   5.318


  56 in total

Review 1.  Challenges and opportunities in cryo-EM single-particle analysis.

Authors:  Dmitry Lyumkis
Journal:  J Biol Chem       Date:  2019-02-25       Impact factor: 5.157

2.  Evaluating Local and Directional Resolution of Cryo-EM Density Maps.

Authors:  Sriram Aiyer; Cheng Zhang; Philp R Baldwin; Dmitry Lyumkis
Journal:  Methods Mol Biol       Date:  2021

3.  Expanding the structural biology toolbox with single-molecule holography.

Authors:  Federico Forneris; Andrea Mattevi
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-02       Impact factor: 11.205

4.  Scipion web tools: Easy to use cryo-EM image processing over the web.

Authors:  Pablo Conesa Mingo; José Gutierrez; Adrián Quintana; José Miguel de la Rosa Trevín; Airén Zaldívar-Peraza; Jesús Cuenca Alba; Mohsen Kazemi; Javier Vargas; Laura Del Cano; Joan Segura; Carlos Oscar S Sorzano; Jose María Carazo
Journal:  Protein Sci       Date:  2017-11-06       Impact factor: 6.725

5.  Angular reconstitution-based 3D reconstructions of nanomolecular structures from superresolution light-microscopy images.

Authors:  Desirée Salas; Antoine Le Gall; Jean-Bernard Fiche; Alessandro Valeri; Yonggang Ke; Patrick Bron; Gaetan Bellot; Marcelo Nollmann
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-15       Impact factor: 11.205

Review 6.  Never at rest: insights into the conformational dynamics of ion channels from cryo-electron microscopy.

Authors:  Carus Lau; Mark J Hunter; Alastair Stewart; Eduardo Perozo; Jamie I Vandenberg
Journal:  J Physiol       Date:  2018-03-05       Impact factor: 5.182

7.  Structure and Immune Recognition of the HIV Glycan Shield.

Authors:  Max Crispin; Andrew B Ward; Ian A Wilson
Journal:  Annu Rev Biophys       Date:  2018-03-29       Impact factor: 12.981

8.  Solvent flows, conformation changes and lattice reordering in a cold protein crystal.

Authors:  David W Moreau; Hakan Atakisi; Robert E Thorne
Journal:  Acta Crystallogr D Struct Biol       Date:  2019-10-31       Impact factor: 7.652

Review 9.  The role of π-helices in TRP channel gating.

Authors:  Lejla Zubcevic; Seok-Yong Lee
Journal:  Curr Opin Struct Biol       Date:  2019-08-02       Impact factor: 6.809

10.  Cryo-EM reconstruction of continuous heterogeneity by Laplacian spectral volumes.

Authors:  Amit Moscovich; Amit Halevi; Joakim Andén; Amit Singer
Journal:  Inverse Probl       Date:  2020-01-28       Impact factor: 2.407

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