| Literature DB >> 35794917 |
Yue Li1, Shuang-Hui He1, Che-Chih Chen2,3, Karen K Nakasone4, Hai-Xia Ma5.
Abstract
The phylogenetic analyses of the family Irpicaceae were carried out based on a complete global sampling. The dataset that included concatenated ITS1-5.8S-ITS2 and nrLSU sequences of 67 taxa of Irpicaceae from around the world was subjected to the maximum likelihood analyses and Bayesian inference. In the phylogenetic tree, species from 14 genera were distributed in nine clades, among which five genera-Irpex, Phanerochaetella, Byssomerulius, Cytidiella, and Meruliopsis, received high support values. The genus Efibula was shown to be paraphyletic and four subclades could be recognized, while Phanerochaete allantospora, Leptoporus mollis, and several species from Ceriporia and Candelabrochaete formed a large clade with relatively strong support. Based on the molecular and morphological evidence, seven new corticioid species- Candelabrochaete guangdongensis, Efibula grandinosa, E. hainanensis, E. shenghuae, E. taiwanensis, Irpex alboflavescens, and Phanerochaetella sinensis, were revealed from the materials mostly from East Asia. The monotypic genus Flavodontia, newly described from southwestern China, is regarded as a later synonym of Irpex, and the new combination I. rosea is proposed. In addition, Phanerochaetella queletii is proposed for a taxon first described from Italy and newly recorded from China; Phanerochaete jose-ferreirae from Portugal is determined to be a later synonym. Descriptions and illustrations of the new species and the newly combined taxa are presented, and morphological comparisons for the known species of Efibula and Phanerochaetella are provided.Entities:
Keywords: East Asia; Phanerochaete s.l.; corticioid fungi; phlebioid clade; white rot; wood-decaying fungi
Year: 2022 PMID: 35794917 PMCID: PMC9251475 DOI: 10.3389/fmicb.2022.911978
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 6.064
Species and sequences used in the phylogenetic analyses.
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| FP-102382 | USA | KP135007 | KP135230 | Floudas and Hibbett, |
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| WEI 17-645 | China | LC427006 | LC427030 | Chen et al., |
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| FP-110343-Sp | USA | KY948793 | KY948886 | Justo et al., |
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| AS-95 | Sweden | EU118609 | EU118609 | Larsson, |
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| RLG-9759-Sp | USA | — | GQ470631 | Wu et al., |
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| RMJ119sp | USA | KY948783 | — | Justo et al., |
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| GC 1708-338 | China | LC427008 | LC427040 | Chen et al., |
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| GC 1508-71 | China | LC427022 | LC427044 | Chen et al., |
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| WEI 17-024 | China | LC427024 | LC427046 | Chen et al., |
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| GC 1703-81 | China | LC427020 | LC427037 | Chen et al., |
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| RLG-11354-Sp | USA | KP135041 | KP135204 | Floudas and Hibbett, |
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| Wu 1707-171 | China | LC427021 | LC427038 | Chen et al., |
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| GC 1708-211 | China | LC427027 | LC427049 | Chen et al., |
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| Miettinen 11701 | Netherlands | KX752600 | KX752600 | Miettinen et al., |
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| UN63A | Egypt | KX428470 | — | El-Gharabawy et al., |
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| MR-4310 | USA | KY948797 | KY948888 | Justo et al., |
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| HHB-15692-Sp | USA | KP135031 | KP135200 | Floudas and Hibbett, |
| FP-101245-Sp | USA | KP135029 | — | Floudas and Hibbett, | |
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| GB-1833 | Spain | KY948748 | KY948889 | Justo et al., |
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| He 5575 | China | MZ422526 | MZ422497 | Present study |
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| WEI 18-474 | China | MZ636948 | MZ637110 | Chen et al., |
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| FP-101843-sp | USA | AY219369 | — | De Koker et al., |
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| He 3089 | China | MZ422525 | MZ422496 | Present study |
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| He 5126 | China | MZ422523 | MZ422494 | Present study |
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| He 5135 | China | MZ422524 | MZ422495 | Present study |
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| Nystroem 020830 | Sweden | EU118655 | EU118655 | Larsson, |
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| T-407 | Canada | KY948747 | — | Justo et al., |
| He 6198 | China | — | MZ422498 | Present study | |
| Wu 0010-171 | China | MZ636951 | MZ637114 | Chen et al., | |
| Wu 1409-168 | China | MZ636952 | MZ637115 | Chen et al., | |
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| FP-102165 | USA | KP135016 | KP135256 | Floudas and Hibbett, |
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| HHB-10209-Sp | USA | KP135014 | — | Floudas and Hibbett, |
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| FD-228 | USA | KP135019 | — | Floudas and Hibbett, |
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| FD-455 | USA | KP135027 | — | Floudas and Hibbett, |
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| FP-102052 | USA | KP135028 | — | Floudas and Hibbett, |
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| Wu 1707-96 | China | MZ636954 | MZ637118 | Chen et al., |
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| Chen 1510 | China | MZ636955 | — | Chen et al., |
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| FCUG 305 | Sweden | MZ636959 | GQ470669 | Wu et al., | |
| Wu 1707-79 | China | MZ636961 | MZ637123 | Chen et al., | |
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| Chen 1716 | China | MZ636962 | MZ637124 | Chen et al., |
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| He 3983 | China | MW580944 | MW580934 | Present study |
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| He 7032 | China | MZ422506 | MZ422477 | Present study |
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| Chen 3596 | China | MZ636966 | MZ637128 | Chen et al., |
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| He 6008 | China | MW580947 | MW580937 | Present study |
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| WEI 18-149 | China | MZ636967 | MZ637129 | Chen et al., |
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| OM-6707 | Finland | KP135017 | — | Floudas and Hibbett, |
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| OM-11754 | Finland | KP135018 | — | Floudas and Hibbett, |
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| He 3145 | China | MW580945 | MW580935 | Present study |
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| He 6711 | China | MW580946 | MW580936 | Present study |
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| Wu 0910-99 | China | MZ636973 | MZ637135 | Chen et al., |
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| CLZhao 11641 | China | MT611529 | — | Ma et al., |
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| He 4653 | China | MW580948 | MW580938 | Present study |
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| He 6970 | China | MZ422505 | MZ422476 | Present study |
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| Miettinen 16992 | USA | KY948741 | KY948891 | Justo et al., |
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| LE295997 | Tanzania | KF856505 | KF856510 | Zmitrovich and Malysheva, |
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| WHC 1381 | China | LC427029 | LC427052 | Chen et al., |
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| KUC20121109-01 | South Korea | KJ668510 | KJ668362 | Jang et al., |
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| Dai 22402 | China | MZ787973 | MZ787965 | Tian et al., |
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| Dai 13638A | China | KX494576 | KX494580 | Yuan et al., |
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| FD-9 | USA | KP135026 | KP135224 | Floudas and Hibbett, |
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| FD-93 | USA | KP135025 |
| Floudas and Hibbett, |
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| FP-55521T | USA | KP135024 | KP135202 | Floudas and Hibbett, |
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| Piatek 1997 | Poland | KX752592 | KX752592 | Miettinen et al., |
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| Wu 1608-22 | China | MZ636992 | MZ637153 | Chen et al., |
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| LR40855 | USA | JN649347 | JN649347 | Sjökvist et al., |
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| Meijer3729 | Brazil | JN649346 | JN649346 | Sjökvist et al., |
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| BPI 893213 | USA | NR_154000 | NG_060421 | Simmons et al., |
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| CLZhao 3341 | China | MH114652 | — | Unpublished |
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| Cui 7275 | China | KY131836 | KY131895 | Wu et al., |
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| Dai 5929 | China | KY131837 | KY131896 | Wu et al., |
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| He 3468 | China | MW580942 | MW580932 | Present study |
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| RLG7163 | USA | KY948794 |
| Justo et al., |
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| TJV-93-174T | USA | KY948795 | EU402510 | Lindner and Banik, |
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| CHWC 1506-46 | China | LC427010 | LC427034 | Chen et al., |
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| Wu 1708-43 | China | LC427013 | LC427033 | Chen et al., |
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| Wu 1209-58 | China | LC427017 | LC427039 | Chen et al., |
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| GC 1704-60 | China | LC427028 | LC427050 | Chen et al., |
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| KKN-111-Sp | USA | KP135038 | KP135238 | Floudas and Hibbett, |
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| RLG-10478 | USA | KP135039 |
| Floudas and Hibbett, |
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| He 4789 | China | MZ422513 | MZ422484 | Present study |
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| He 3167 | China | MZ422514 | MZ422485 | Present study |
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| He 2965 | China | MZ422515 | MZ422486 | Present study |
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| CLZhao 8393 | China | MK404428 |
| Unpublished |
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| KUC20121102-15 | South Korea | KJ668492 | KJ668346 | Unpublished |
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| Wu 9606-39 | China |
| GQ470638 | Wu et al., |
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| HHB-6988-Sp | USA | KP135001 | KP135236 | Floudas and Hibbett, |
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| Chen 479 | China |
| GQ470650 | Wu et al., |
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| He 3391 | China | MZ422520 | MZ422491 | Present study |
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| He 3962 | China | MZ422522 | MZ422493 | Present study |
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| He 4411 | China | MZ422521 | MZ422492 | Present study |
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| 103526 | India |
| KP715577 | Unpublished |
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| Chen 1362 | China |
| GQ470646 | Wu et al., |
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| He 4770 | China | MZ422516 | MZ422487 | Present study |
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| FP-102936 | USA | KP135000 |
| Floudas and Hibbett, | |
| HHB-18104 | New Zealand | KP135003 | KP135254 | Floudas and Hibbett, | |
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| HHB-8509-Sp | USA | KP134996 | KP135259 | Floudas and Hibbett, |
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| KKN-172-Sp | USA | KP134997 |
| Floudas and Hibbett, |
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| HHB-15629-Sp | USA | KP135023 | KP135207 | Floudas and Hibbett, |
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| BRNM 710169 | Czech Republic | FJ496675 | FJ496698 | Tomšovský et al., |
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| Robledo 1236 | Argentina | KY655336 | KY655338 | Lopes et al., |
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| TJV-93-216T | USA | JN165020 | JN164796 | Justo and Hibbett, |
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| FP-151129 | USA | KP135058 | KP135213 | Floudas and Hibbett, |
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| L-15726-Sp | USA | KP135060 | KP135214 | Floudas and Hibbett, |
New species and new combinations are set in bold with type specimens indicated with an asterisk *.
Figure 1Phylogram of Irpicaceae inferred from Bayesian inference using the concatenated ITS-nrLSU sequences dataset. Branches are labeled with likelihood bootstrap values (≥50%, before the slash) and Bayesian posterior probabilities (≥0.95, after the slash). New species and new combinations are set in bold.
Figure 2Candelabrochaete guangdongensis (from the holotype He 5902; scale bars: a = 1 cm; b–d, f = 10 μm; e = 20 μm). (A) Basidiomata. (B) Basidiospores. (C) Basidia. (D) Basidioles. (E) Septocystidia. (F) Hyphae from subiculum.
Figure 3Efibula grandinosa (from the holotype He 6312; scale bars: a = 1 cm; b–e = 10 μm). (A) Basidiomata. (B) Basidiospores. (C) Basidia. (D) Basidioles. (E) Hyphae from subiculum.
Figure 4Efibula hainanensis (from the holotype He 6004; scale bars: a = 1 cm; b–f = 10 μm). (A) Basidiomata. (B) Basidiospores. (C) Basidia. (D) Basidioles. (E) Cystidia. (F) Hyphae from subiculum.
Figure 5Efibula shenghuae (from the holotype He 3384; scale bars: a = 1 cm; b–e = 10 μm). (A) Basidiomata. (B) Basidiospores. (C) Basidia. (D) Basidioles. (E) Hyphae from subiculum.
Figure 6Efibula taiwanensis (from the holotype He 4582a; scale bars: a = 1 cm; b–e = 10 μm). (A) Basidiomata. (B) Basidiospores. (C) Basidia. (D) Basidioles. (E) Hyphae from subiculum.
Figure 7Irpex alboflavescens (from the holotype He 3933; scale bars: a = 1 cm; b–f = 10 μm). (A) Basidiomata. (B) Basidiospores. (C) Basidia. (D) Basidioles. (E) Lamprocystidia. (F) Hyphae from subiculum.
Figure 8Basidiomata of Irpex alboflavescens (scale bars: A–E = 1 cm). (A) He 2278; (B) He 4719; (C) He 5783; (D) He 6355; (E) He 5732.
Figure 9Basidiomata of Irpex rosea [from He 6277; scale bars: (A–D) = 1 cm].
Figure 10Irpex rosea (from He 6277; scale bars: a–c = 10 μm). (A) Basidiospores. (B) Basidia and basidioles. (C) Hyphae from subiculum.
Figure 11Phanerochaetella sinensis (from the holotype He 4229; scale bars: a = 1 cm; b–f = 10 μm). (A) Basidiomata. (B) Basidiospores. (C) Basidia. (D) Basidioles. (E) Lamprocystidia. (F) Hyphae from subiculum.
Figure 12Basidiomata of Phanerochaetella queletii (scale bars: A–F = 1 cm). (A) K(M) 146494 (holotype of Corticium jose-ferrieriae); (B) BPI 282568 (holotype of C. queletii); (C) F11364 (isotype of C. queletii); (D) He 3284; (E) He 20120917-10; (F) He 7467.
Figure 13Phanerochaetella queletii (from He 3284; scale bars: a–d = 10 μm). (A) Basidiospores. (B) Basidia. (C) Basidioles. (D) Hyphae from subiculum.
Diagnostic characters for species of Efibula.
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| Smooth to reticulate | Not mentioned | Absent | 20–32 × 5–8 | Ellipsoid to Cylindrical | 5.3–6.5 × 3–3.8 | USA | Floudas and Hibbett, |
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| Slightly tuberculate | Not mentioned | Absent | 25–39 × 5–7.5 | oblong to ellipsoid | 6–7 × 3–3.5 | USA | Floudas and Hibbett, |
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| Smooth | Not mentioned | Absent | 17–30 × 5–6.5 | Ellipsoid to oblong | 5.5–7 × 3.3–4 | USA | Floudas and Hibbett, |
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| grandinioid | Slightly darkening | Absent | 36–43 × 5–7 | Ellipsoid | 6–6.8 × 3.7–4 | China | Present study |
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| Smooth | turning black | rare | 15–26 × 4–6 | Ellipsoid to broadly ellipsoid | 4.2–5.5 × 2.8–3.2 | China | Present study |
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| Smooth | No | Absent | 30–35 × 4.5–5 | Cylindrical | 5.6–6.4 × 2.2–2.6 | China | Chen et al., |
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| Smooth | darkening | Absent | 18–25 × 6.5–8 | Ellipsoid to Cylindrical | 7.4–8.6 × 3.8–4.4 | China | Chen et al., |
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| Smooth to tuberculate | Not mentioned | Absent | 35–48 × 6–8 | Ellipsoid | 6–7 × 4–5 | Micronesia | Boonmee et al., |
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| Smooth to grandinioid | No | Absent | 23–38 × 4.5–7 | Oblong ellipsoid | 6–6.5 × 3–3.5 | China | Present study |
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| Smooth | No | Absent | 30–40 × 6.5–8 | Broadly ellipsoid to subglobose | 6.4–8.1 × 4.5–5.8 | China | Chen et al., |
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| Smooth | No | Absent | 24–44 × 6–8 | Broadly ellipsoid to ovoid | 5.8–6.5 × 4–4.5 | China | Present study |
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| Smooth | No | Absent | 20–40 × 5.5–8 | Broadly ellipsoid | 6.4–7.7 × 3.7–4.4 | China and Japan | Chen et al., |
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| Smooth to slightly tuberculate | No | Absent | 18–35 × 5–6 | Ellipsoid | 5.3–6.4 × 3.4–4.3 | East Asia, Europe and North America | Chen et al., |
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| Smooth | No | Absent | 26–30 × 6.5–7 | Cylindrical | 6.6–8.2 × 3.3–3.9 | China | Chen et al., |
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| mainly Smooth, sometimes slightly tuberculate | No | Absent | 27–38 × 6–7 | Broadly ellipsoid | 6.6–8 × 3.9–4.7 | China and Japan | Chen et al., |
Diagnostic characters for species of Phanerochaetella.
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| Smooth | Yes; 30–70 × 5–9 | 18–28 × 4.5–5.5 | Cylindrical | 6.3–8 × 2.3–3 | China and Japan | Wu, |
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| Smooth to finely pubescent | Yes; 30–50 × 5–6 | 12–15 × 5–6 | ellipsoid | 5.5–6.5 × 3–3.5 | Mexico and USA | Burdsall, |
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| Smooth | Yes; 20–35 × 7–10 | 18–24 × 5–6 | Cylindrical | 7.5–8.7 × 2.9–3.5 | China | Chen et al., |
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| Smooth | Yes; 35–65 × 4–6 | 21–28 × 4.7–6 | Cylindrical | 6.4–7.6 × 2.9–3.3 | China, India and Japan | Wu, |
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| Smooth | No | 28–42 × 4.5–7 | Cylindrical | 7–8 × 2–2.8 | China and USA | Present study |
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| Smooth | Yes; 30–70 × 5–10 | 20–35 × 4–6 | Cylindrical | 6–7.2 × 2–3 | China | Present study |
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| Smooth to tuberculate | No | 30–40 × 6–7 | Broadly ellipsoid | 6–9 × 3.5–4.5 | USA | Burdsall, |