Literature DB >> 35788760

Targeted erasure of DNA methylation by TET3 drives adipogenic reprogramming and differentiation.

Jeu Park1, Do Hoon Lee2, Seokjin Ham3, Jiyoung Oh4, Jung-Ran Noh5, Yun Kyung Lee6, Yoon Jeong Park1, Gung Lee1, Sang Mun Han1, Ji Seul Han1, Ye Young Kim1, Yong Geun Jeon1, Han Nahmgoong1, Kyung Cheul Shin1, Sung Min Kim1, Sung Hee Choi6, Chul-Ho Lee5, Jiyoung Park4, Tae Young Roh3, Sun Kim7, Jae Bum Kim8.   

Abstract

DNA methylation is a crucial epigenetic modification in the establishment of cell-type-specific characteristics. However, how DNA methylation is selectively reprogrammed at adipocyte-specific loci during adipogenesis remains unclear. Here, we show that the transcription factor, C/EBPδ, and the DNA methylation eraser, TET3, cooperatively control adipocyte differentiation. We perform whole-genome bisulfite sequencing to explore the dynamics and regulatory mechanisms of DNA methylation in adipocyte differentiation. During adipogenesis, DNA methylation selectively decreases at adipocyte-specific loci carrying the C/EBP binding motif, which correlates with the activity of adipogenic promoters and enhancers. Mechanistically, we find that C/EBPδ recruits a DNA methylation eraser, TET3, to catalyse DNA demethylation at the C/EBP binding motif and stimulate the expression of key adipogenic genes. Ectopic expression of TET3 potentiates in vitro and in vivo adipocyte differentiation and recovers downregulated adipogenic potential, which is observed in aged mice and humans. Taken together, our study highlights how targeted reprogramming of DNA methylation through cooperative action of the transcription factor C/EBPδ, and the DNA methylation eraser TET3, controls adipocyte differentiation.
© 2022. The Author(s), under exclusive licence to Springer Nature Limited.

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Year:  2022        PMID: 35788760     DOI: 10.1038/s42255-022-00597-7

Source DB:  PubMed          Journal:  Nat Metab        ISSN: 2522-5812


  63 in total

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Journal:  Nat Rev Genet       Date:  2012-05-29       Impact factor: 53.242

2.  Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain.

Authors:  Junjie U Guo; Yijing Su; Chun Zhong; Guo-li Ming; Hongjun Song
Journal:  Cell       Date:  2011-04-14       Impact factor: 41.582

Review 3.  DNA methylation: roles in mammalian development.

Authors:  Zachary D Smith; Alexander Meissner
Journal:  Nat Rev Genet       Date:  2013-02-12       Impact factor: 53.242

4.  Reversing DNA methylation: mechanisms, genomics, and biological functions.

Authors:  Hao Wu; Yi Zhang
Journal:  Cell       Date:  2014-01-16       Impact factor: 41.582

Review 5.  DNA methylation dynamics in cellular commitment and differentiation.

Authors:  Mònica Suelves; Elvira Carrió; Yaiza Núñez-Álvarez; Miguel A Peinado
Journal:  Brief Funct Genomics       Date:  2016-06-08       Impact factor: 4.241

Review 6.  DNA methylation and gene function.

Authors:  A Razin; A D Riggs
Journal:  Science       Date:  1980-11-07       Impact factor: 47.728

7.  DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development.

Authors:  M Okano; D W Bell; D A Haber; E Li
Journal:  Cell       Date:  1999-10-29       Impact factor: 41.582

Review 8.  The diverse roles of DNA methylation in mammalian development and disease.

Authors:  Maxim V C Greenberg; Deborah Bourc'his
Journal:  Nat Rev Mol Cell Biol       Date:  2019-08-09       Impact factor: 94.444

Review 9.  Active DNA demethylation mediated by DNA glycosylases.

Authors:  Jian-Kang Zhu
Journal:  Annu Rev Genet       Date:  2009       Impact factor: 16.830

Review 10.  Whole genome DNA methylation: beyond genes silencing.

Authors:  Roberto Tirado-Magallanes; Khadija Rebbani; Ricky Lim; Sriharsa Pradhan; Touati Benoukraf
Journal:  Oncotarget       Date:  2017-01-17
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