Literature DB >> 27416614

DNA methylation dynamics in cellular commitment and differentiation.

Mònica Suelves, Elvira Carrió, Yaiza Núñez-Álvarez, Miguel A Peinado.   

Abstract

DNA methylation is an essential epigenetic modification for mammalian development and is crucial for the establishment and maintenance of cellular identity. Traditionally, DNA methylation has been considered as a permanent repressive epigenetic mark. However, the application of genome-wide approaches has allowed the analysis of DNA methylation in different genomic contexts, revealing a more dynamic regulation than originally thought, as active DNA methylation and demethylation occur during cell fate commitment and terminal differentiation. Recent data provide insights into the contribution of different epigenetic factors, and DNA methylation in particular, to the establishment of cellular memory during embryonic development and the modulation of cell type-specific gene regulation programs to ensure proper differentiation. This review summarizes published data regarding DNA methylation changes along lineage specification and differentiation programs. We also discuss the current knowledge about DNA methylation alterations occurring in physiological and pathological conditions such as aging and cancer.
© The Author 2016. Published by Oxford University Press. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Entities:  

Keywords:  DNA methylation; aging; cell differentiation; enhancer regulation; lineage commitment

Mesh:

Year:  2016        PMID: 27416614     DOI: 10.1093/bfgp/elw017

Source DB:  PubMed          Journal:  Brief Funct Genomics        ISSN: 2041-2649            Impact factor:   4.241


  31 in total

1.  A Yap-Myc-Sox2-p53 Regulatory Network Dictates Metabolic Homeostasis and Differentiation in Kras-Driven Pancreatic Ductal Adenocarcinomas.

Authors:  Shigekazu Murakami; Ivan Nemazanyy; Shannon M White; Hengye Chen; Chan D K Nguyen; Garrett T Graham; Dieter Saur; Mario Pende; Chunling Yi
Journal:  Dev Cell       Date:  2019-08-22       Impact factor: 12.270

Review 2.  Cell fate specification and differentiation in the adult mammalian intestine.

Authors:  Joep Beumer; Hans Clevers
Journal:  Nat Rev Mol Cell Biol       Date:  2020-09-21       Impact factor: 94.444

3.  High fat diet and exercise lead to a disrupted and pathogenic DNA methylome in mouse liver.

Authors:  Dan Zhou; Ryan A Hlady; Marissa J Schafer; Thomas A White; Chen Liu; Jeong-Hyeon Choi; Jordan D Miller; Lewis R Roberts; Nathan K LeBrasseur; Keith D Robertson
Journal:  Epigenetics       Date:  2016-11-18       Impact factor: 4.528

Review 4.  Mitochondrial function in spinal cord injury and regeneration.

Authors:  Paula G Slater; Miguel E Domínguez-Romero; Maximiliano Villarreal; Verónica Eisner; Juan Larraín
Journal:  Cell Mol Life Sci       Date:  2022-04-13       Impact factor: 9.261

5.  Targeted erasure of DNA methylation by TET3 drives adipogenic reprogramming and differentiation.

Authors:  Jeu Park; Do Hoon Lee; Seokjin Ham; Jiyoung Oh; Jung-Ran Noh; Yun Kyung Lee; Yoon Jeong Park; Gung Lee; Sang Mun Han; Ji Seul Han; Ye Young Kim; Yong Geun Jeon; Han Nahmgoong; Kyung Cheul Shin; Sung Min Kim; Sung Hee Choi; Chul-Ho Lee; Jiyoung Park; Tae Young Roh; Sun Kim; Jae Bum Kim
Journal:  Nat Metab       Date:  2022-07-04

6.  Prenatal transportation stress alters genome-wide DNA methylation in suckling Brahman bull calves.

Authors:  Brittni P Littlejohn; Deborah M Price; Don A Neuendorff; Jeffery A Carroll; Rhonda C Vann; Penny K Riggs; David G Riley; Charles R Long; Thomas H Welsh; Ronald D Randel
Journal:  J Anim Sci       Date:  2018-12-03       Impact factor: 3.159

Review 7.  DNA methylation methods: Global DNA methylation and methylomic analyses.

Authors:  Shizhao Li; Trygve O Tollefsbol
Journal:  Methods       Date:  2020-10-09       Impact factor: 3.608

8.  DNMT3B Is an Oxygen-Sensitive De Novo Methylase in Human Mesenchymal Stem Cells.

Authors:  Fatma Dogan; Rakad M Kh Aljumaily; Mark Kitchen; Nicholas R Forsyth
Journal:  Cells       Date:  2021-04-27       Impact factor: 6.600

9.  Emergent dynamics of a three-node regulatory network explain phenotypic switching and heterogeneity: a case study of Th1/Th2/Th17 cell differentiation.

Authors:  Atchuta Srinivas Duddu; Sauma Suvra Majumdar; Sarthak Sahoo; Siddharth Jhunjhunwala; Mohit Kumar Jolly
Journal:  Mol Biol Cell       Date:  2022-03-30       Impact factor: 3.612

Review 10.  Age-Related Epigenetic Derangement upon Reprogramming and Differentiation of Cells from the Elderly.

Authors:  Francesco Ravaioli; Maria G Bacalini; Claudio Franceschi; Paolo Garagnani
Journal:  Genes (Basel)       Date:  2018-01-16       Impact factor: 4.096

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