| Literature DB >> 35765008 |
Peikai Chen1,2, Zhijia Tan3,4, Anmei Qiu3, Shijie Yin3, Yapeng Zhou3, Zhongxin Dong3, Yan Qiu3, Jichun Xu3, Kangsen Li3, Lina Dong3, Hiu Tung Shek3, Jingwen Liu3, Eric H K Yeung5, Bo Gao6, Kenneth Man Chee Cheung3,4, Michael Kai-Tsun To7,8.
Abstract
BACKGROUND: Osteogenesis imperfecta (OI) is a rare congenital disorder of the skeletal system, inflicting debilitating physical and psychological distress on patients and caregivers. Over the decades, much effort has been channeled towards understanding molecular mechanisms and developing new treatments. It has recently become more apparent that patient-reported outcome measurements (PROM) during treatment, healing and rehabilitation are helpful in facilitating smoother communication, refining intervention strategies and achieving higher quality of life. To date, systematic analyses of PROM in OI patients remain scarce.Entities:
Keywords: Adults; Children; Cross-sectional; Genetic testing; Longitudinal; Osteogenesis imperfecta; PROM; Patient stratification; Psycho-physical; Rare disease
Mesh:
Year: 2022 PMID: 35765008 PMCID: PMC9238011 DOI: 10.1186/s13023-022-02394-7
Source DB: PubMed Journal: Orphanet J Rare Dis ISSN: 1750-1172 Impact factor: 4.303
Fig. 3PCA and clustering analyses of child and adolescent PROMIS data. A Venn diagram showing the overlap of self and parental assessment cases. B Piechart showing the percentages of variance explained by principal component analysis (PCA). C A three-dimensional scatter plot showing the projections onto the top three components. Each dot represents one patient. D Scatter plot showing the first two PCs, with density contours. Red curves indicate saddle and valley between the two peaks/clusters. E Bar charts showing the ordered loading scores for the first and second PC. F Heatmap with clustering showing data in their original values. Marginal ridge plots show the marginal densities either per-patient (row-wise) or per PROMIS-item (column-wise), with an aggregated density for all data points placed on the top right corner. The meanings of the colors are explained by the smile or sad face symbols. The PROMIS items are abbreviated by their categories and a representative keyword. Refer to Additional file 1 for corresponding questions in full
Fig. 4PCA and clustering analyses of parental PROMIS data. A Scatter plot showing the first two PCs, with density contours. Red curves indicate saddle and valley between the two peaks/clusters. B Bar charts showing the ordered loading scores for the first and second PC. C Heatmap with clustering showing data in their original values. Marginal ridge plots show the marginal densities either per-patient (row-wise) or per PROMIS-item (column-wise), with an aggregated density for all data points placed on the top right corner. The meanings of the colors were explained by the smile or sad face symbols. The PROMIS items are abbreviated by their categories and a representative keyword. Refer to Additional file 1 for corresponding questions in full
Fig. 7PROMIS outcomes of adult patients. A PCA of adult patients’ PROMIS outcomes. B Heatmap showing the individual assessment outcomes. Ridge plots to the right and bottom are the density estimations that show the row-wise or column-wise distributions. C Heatmap showing the clinical features of the adult patients. The PROMIS items are abbreviated by their categories and a representative keyword. Refer to Additional file 1 for corresponding questions in full
Fig. 1Schematic diagram showing the study design and data flow
Fig. 2Overview of the current patient cohort. A Pie chart showing the frequency of PROMIS tables provided by the 90 patients. B Pie chart showing the gender distribution. C Pyramid histograms showing the age distribution in the two genders. Solid curves represent fitted kernel density estimations. D Treatment strategies among the 86 patients with records. BP: bisphosphonate. E Self-reported socioeconomic situations of the patients’ families, stratified by the sources of medical expenses, among the 63 patients where such data were available. RMB is the Chinese currency. F Pie chart showing the distributions of affected genes among the 59 patients that underwent genetic screening on a panel of 24 genes for targeted sequencing. G Bar chart showing the distribution of Sillence subtypes among the different genotypes
Demographical characteristics
| Child group (< 18 years) | Adult group (≥ 18 years) | ||
|---|---|---|---|
| Numbers of patients | 74 | 16 | |
| Age (years) | 10.7 (IQR 7.5 ~ 14) | 26.7 (IQR 19 ~ 31) | |
| Male % | 60.8% (45 out of 74) | 62.5% (10 out of 16) | 1.0 |
| Sillence subtypes | 0.015 | ||
| I | n = 7a (11.1%) b | n = 1 (6.7%) | |
| III | n = 8 (12.7%) | n = 7 (46.7%) | |
| IV | n = 40 (63.5%) | n = 6 (40%) | |
| V | n = 8 (12.7%) | n = 1 (6.7%) | |
| Number of fractures per year | 1.1 (IQR 0.6 ~ 1.4) | 0.5 (IQR 0.2 ~ 0.5) | 0.003 |
| Leg length discrepancy (LLD) | 61.8% (42 out of 68) | 92.8% (13 out of 14) | 0.052 |
| Dentinogenesis imperfecta | 58.4% (38 out of 65) | 50% (7 out of 14) | 0.78 |
| Limited joint mobility | 22.4% (15 out of 67) | 42.8% (6 out of 14) | 0.21 |
| Hearing loss | 5.9% (4 out of 68) | 7.1% (1 out of 14) | 1.0 |
| Scoliosis | 47.8% (32 out of 67) | 73.3% (11 out of 15) | 0.13 |
| Radial head dislocation | 18.2 (12 out of 66) | 28.6% (4 out of 14) | 0.61 |
| Sclera | 73.1% (49 out of 67) | 71.4% (10 out of 14) | 1.0 |
| Muscle strengthsc | 4.0 (IQR 3.7 ~ 4.3) | 3.6 (IQR 3.3 ~ 4.0) | 0.19 |
| 2 | n = 3a | n = 0 | |
| 2+ | n = 1 | n = 0 | |
| 3 | n = 6 | n = 1 | |
| 3+ | n = 7 | n = 1 | |
| 4− | n = 1 | n = 0 | |
| 4 | n = 19 | n = 2 | |
| 4+ | n = 4 | n = 2 | |
| 5 | n = 2 | n = 1 |
*Based on Pearson χ2 testing (for categorical variables) or Wilcoxon rank-sum testing (for continuous variables). IQR inter-quartile range
an is the number of patients
bOut of patients of whom Sillence type information was available
c3+ is better than 3 but poorer than 4 and 4-
Fig. 5The identification of two PROMIS groups in child and adolescent patients, and clinical characteristics of the groups. A A Venn diagram showing the identification of two PROMIS groups in the young patients by their own assessments and their parents’ assessments. The numbers correspond to the numbers of patients in each category. The labels C1, C2, P1 and P2 correspond to the Figs. 3D and 4A. The 7 patients with discordance between the patients’ own and their parents’ assessments were considered “ambiguous”. B Pie charts showing the distribution of affected genes in the two groups of patients. C Bar-charts showing the clinical features in decreasing order of significance, in terms of their associations with the PROMIS groups. D Pie charts showing the positive rates for each of the four significantly associated clinical features in the two PROMIS groups. E Scatter plot showing the patients’ heights versus their ages. The straight lines are regression curve fitted for each of the four patient groups. F Scatter plot showing the patients’ spine BMD versus their ages. The straight lines are regression curve fitted for each of the four patient groups. G Violin plots showing the residuals of heights after fitting against age, with respect to the four groups. H Violin plots showing the residuals of BMDs after fitting against age, with respect to the four groups. P values in G, H indicate the F-testing result. I Violin plot showing muscle strengths in the two clusters
Fig. 6Projections of later PROMIS outcomes to the PCA of the first PROMIS outcome. A Projections of children and adolescent’s later PROMIS outcomes (second, third or fourth) on the loading scores of the PCA of the first PROMIS outcomes. B Projections of parents’ later PROMIS outcomes (second, third or fourth) on the loading scores of the PCA of the first PROMIS outcomes. Arrows point from the PROMIS outcome at one time-point to the next, for each patient. Arrow colors indicate the original states in the first PROMIS. The transition diagrams at the bottoms of A, B show the numbers of state changes for each pair of successive PROMIS surveys. The numbers on the edges show the numbers of patients or numbers of times a patient changes from one state to another (or the same) state