Literature DB >> 35761089

Learning the chemical grammar of biomolecular condensates.

Henry R Kilgore1, Richard A Young2,3.   

Abstract

Biomolecular condensates compartmentalize and regulate assemblies of biomolecules engaged in vital physiological processes in cells. Specific proteins and nucleic acids engaged in shared functions occur in any one kind of condensate, suggesting that these compartments have distinct chemical specificities. Indeed, some small-molecule drugs concentrate in specific condensates due to chemical properties engendered by particular amino acids in the proteins in those condensates. Here we argue that the chemical properties that govern molecular interactions between a small molecule and biomolecules within a condensate can be ascertained for both the small molecule and the biomolecules. We propose that learning this 'chemical grammar', the rules describing the chemical features of small molecules that engender attraction or repulsion by the physicochemical environment of a specific condensate, should enable design of drugs with improved efficacy and reduced toxicity.
© 2022. Springer Nature America, Inc.

Entities:  

Year:  2022        PMID: 35761089     DOI: 10.1038/s41589-022-01046-y

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   16.174


  73 in total

1.  The Isolation and Chemical Properties of the Nucleoli of Starfish Oocytes.

Authors:  W S Vincent
Journal:  Proc Natl Acad Sci U S A       Date:  1952-02       Impact factor: 11.205

2.  Germline P granules are liquid droplets that localize by controlled dissolution/condensation.

Authors:  Clifford P Brangwynne; Christian R Eckmann; David S Courson; Agata Rybarska; Carsten Hoege; Jöbin Gharakhani; Frank Jülicher; Anthony A Hyman
Journal:  Science       Date:  2009-05-21       Impact factor: 47.728

Review 3.  Liquid-Liquid Phase Separation in Disease.

Authors:  Simon Alberti; Dorothee Dormann
Journal:  Annu Rev Genet       Date:  2019-08-20       Impact factor: 16.830

Review 4.  Bridging biophysics and neurology: aberrant phase transitions in neurodegenerative disease.

Authors:  Natalia B Nedelsky; J Paul Taylor
Journal:  Nat Rev Neurol       Date:  2019-05       Impact factor: 42.937

Review 5.  Biomolecular Condensates in the Nucleus.

Authors:  Benjamin R Sabari; Alessandra Dall'Agnese; Richard A Young
Journal:  Trends Biochem Sci       Date:  2020-07-17       Impact factor: 13.807

Review 6.  Liquid phase condensation in cell physiology and disease.

Authors:  Yongdae Shin; Clifford P Brangwynne
Journal:  Science       Date:  2017-09-22       Impact factor: 47.728

Review 7.  Phase separation at the synapse.

Authors:  Xudong Chen; Xiandeng Wu; Haowei Wu; Mingjie Zhang
Journal:  Nat Neurosci       Date:  2020-02-03       Impact factor: 24.884

8.  Regulation of Transmembrane Signaling by Phase Separation.

Authors:  Lindsay B Case; Jonathon A Ditlev; Michael K Rosen
Journal:  Annu Rev Biophys       Date:  2019-04-05       Impact factor: 12.981

Review 9.  Considerations and Challenges in Studying Liquid-Liquid Phase Separation and Biomolecular Condensates.

Authors:  Simon Alberti; Amy Gladfelter; Tanja Mittag
Journal:  Cell       Date:  2019-01-24       Impact factor: 41.582

Review 10.  Biomolecular Condensates and Cancer.

Authors:  Ann Boija; Isaac A Klein; Richard A Young
Journal:  Cancer Cell       Date:  2021-01-07       Impact factor: 31.743

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