| Literature DB >> 35755000 |
J S Hooiveld-Noeken1, R S N Fehrmann1, E G E de Vries1, M Jalving1.
Abstract
Metastatic Merkel cell carcinoma (MCC) and cutaneous squamous cell carcinoma (cSCC) are rare and both show impressive responses to immune checkpoint inhibitor treatment. However, at least 40% of patients do not respond to these expensive and potentially toxic drugs. Development of predictive biomarkers of response and rational, effective combination treatment strategies in these rare, often frail patient populations is challenging. This review discusses the pathophysiology and treatment of MCC and cSCC, with a particular focus on potential biomarkers of response to immunotherapy, and discusses how transfer learning using big data collected from patients with common tumours can be used in combination with deep phenotyping of rare tumours to develop predictive biomarkers and elucidate novel treatment targets.Entities:
Keywords: Immune checkpoint inhibitor; Machine learning; Merkel cell carcinoma; Squamous cell skin cancer
Year: 2019 PMID: 35755000 PMCID: PMC9216707 DOI: 10.1016/j.iotech.2019.11.002
Source DB: PubMed Journal: Immunooncol Technol ISSN: 2590-0188
Figure 1Schematic overview of how data from common tumours can be used in combination with machine learning to predict immune checkpoint inhibitor responses in rare tumours. A big-data warehouse is constructed by pooling data from public repositories, clinical trials and biobanks. Data consist of clinicopathological, multi-omics and imaging data from common and rare tumours. By applying appropriate statistical inference on this big-data warehouse, clinicopathological, omics and imaging features can be selected that are strongly associated with immunological parameters potentially relevant to the cancer-immune setpoint. These selected features have the highest likelihood of contributing to the accuracy of a predictive model for response to immunotherapy. By using only these selected features as input parameters, the relatively small-scale cohorts of patients treated with immunotherapy can be used to train an accurate and non-overfitted predictive model, which will ultimately improve patient selection for this treatment.
Trials with immune checkpoint inhibitors in metastatic Merkel cell carcinoma (MCC) and cutaneous squamous cell carcinoma (cSCC)
| Merkel cell carcinoma | ORR (95% CI) | 1 year OS | ESMO-MCBS |
| First-line treatment ( | 62% (42–79) | Data not available | 3 |
| Second-line treatment for metastatic MCC ( | 33% (23–44) | 52% | 3 |
| First-line treatment for recurrent locally advanced or metastatic MCC ( | 56% (35–76) | 72% | 3 |
| Cutaneous squamous cell carcinoma | ORR (95% CI) | 1 year OS | ESMO-MCBS |
| First- or second-line treatment for metastatic cSCC ( | 47% (34–61) | Data not available | 3 |
The ESMO-Magnitude of Clinical Benefit Scale Version 1.1 (ESMO-MCBS) is a tool for evaluation of the magnitude of benefit from clinical studies [21]. The maximum score for a single-arm study is 4 and can only be achieved when quality-of-life data are available.
ORR, objective response rate; CI, confidence interval; OS, overall survival; PD-L1, programmed death ligand 1; PD-1, programmed death 1.
Examples of tools for sample identification in public repositories
| Automatic text mining tools | |
| Zooma/OntoCat | |
| Expression signature-based classifier tools | |
| GEMENI | |
| SPIED3 | |
| ProfileChaser | |
| ExpressionBlast | |
| SEEK | |
| Crowdsourcing tools | |
| Search Tag Analyze Resource | |
| CREEDS | |
| ADEPTUS | |
Selection of tools that can be used to identify relevant samples in public repositories.