| Literature DB >> 35746311 |
Thulya Chakkumpulakkal Puthan Veettil1,2, Bayden R Wood1.
Abstract
Serum is an important candidate in proteomics analysis as it potentially carries key markers on health status and disease progression. However, several important diagnostic markers found in the circulatory proteome and the low-molecular-weight (LMW) peptidome have become analytically challenging due to the high dynamic concentration range of the constituent protein/peptide species in serum. Herein, we propose a novel approach to improve the limit of detection (LoD) of LMW amino acids by combining mid-IR (MIR) and near-IR spectroscopic data using glycine as a model LMW analyte. This is the first example of near-IR spectroscopy applied to elucidate the detection limit of LMW components in serum; moreover, it is the first study of its kind to combine mid-infrared (25-2.5 μm) and near-infrared (2500-800 nm) to detect an analyte in serum. First, we evaluated the prediction model performance individually with MIR (ATR-FTIR) and NIR spectroscopic methods using partial least squares regression (PLS-R) analysis. The LoD was found to be 0.26 mg/mL with ATR spectroscopy and 0.22 mg/mL with NIR spectroscopy. Secondly, we examined the ability of combined spectral regions to enhance the detection limit of serum-based LMW amino acids. Supervised extended wavelength PLS-R resulted in a root mean square error of prediction (RMSEP) value of 0.303 mg/mL and R2 value of 0.999 over a concentration range of 0-50 mg/mL for glycine spiked in whole serum. The LoD improved to 0.17 mg/mL from 0.26 mg/mL. Thus, the combination of NIR and mid-IR spectroscopy can improve the limit of detection for an LMW compound in a complex serum matrix.Entities:
Keywords: attenuated total reflection Fourier transform infrared (ATR-FTIR) spectroscopy; chemometrics; glycine; multimodal data fusion; near-infrared spectroscopy; serum proteomics
Mesh:
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Year: 2022 PMID: 35746311 PMCID: PMC9228712 DOI: 10.3390/s22124528
Source DB: PubMed Journal: Sensors (Basel) ISSN: 1424-8220 Impact factor: 3.847
Figure 1Conceptual representation of experiment and associated chemometrics.
Figure 2(a) Second derivatized spectra of fused ATR–NIR datasets of dried glycine deposits in 12,500–1350 nm region. Magnified view of (b) NIR region (2500–1350 nm) and (c) mid-IR region (1600–800 cm−1). Important bands in the spectra are labeled.
Figure 3(a) Baseline corrected raw spectra of glycine-spiked human serum samples. The concentration of glycine ranges from 0–50 mg/mL. (b) Magnified view of 2500–2000 nm region where major contribution from glycine is observed.
Summary of regression statistics.
| Spectroscopic Technique | Regression Method | Region (nm) | No. of LVs/PCs | RMSEC | RMSECV | RMSEP | R2 |
|---|---|---|---|---|---|---|---|
| NIR | Partial-least squares (PLS) | 2550–1350 | 8 | 0.324 | 0.34 | 0.3918 | 0.999 |
| NIR | Principal component regression (PCR) | 2550–1350 | 8 | 0.76 | 0.83 | 0.866 | 0.997 |
| ATR | Partial-least squares (PLS) | 12,500–5550 | 10 | 0.72 | 0.77 | 0.7238 | 0.997 |
| Combined spectral data (NIR-ATR) | Partial-least squares (PLS) | 2550–1350 | 10 | 0.328 | 0.356 | 0.318 | 1.000 |
| Combined spectral data (NIR-ATR) | Partial-least squares (PLS) | 2550–1350 | 10 | 0.307 | 0.344 | 0.303 | 0.997 |
| Combined spectral data (NIR-ATR) | Principle component regression (PCR) | 2550–2000 | 10 | 0.872 | 0.9 | 0.825 | 0.997 |
| Combined spectral data (NIR-ATR) | Principle component regression (PLS) | 2550–2000 | 10 | 0.747 | 0.861 | 0.688 | 0.997 |
Figure 4PLS-R predicted model of glycine-spiked serum samples. (a) Regression plot of entire range between 0 (control) and 50 mg/mL region. (b) Extrapolated and remodeled 0–2.5 mg/mL region. (c) Corresponding regression coefficient/vector over hetero-spectral region covering NIR (2500–1350 nm) and MIR (12,500–5555 nm). (d) Magnified view of regression vector over 2500–1350 nm and (e) 12,500–5555 nm region.
Figure 5PCR predicted model of glycine-spiked serum samples. (a) Regression plot of entire range between 0 (control) and 50 mg/mL region. (b) Extrapolated and remodeled 0–2.5 mg/mL region. (c) Corresponding regression coefficient/vector over hetero-spectral region covering NIR (2500–1350 nm) and MIR (1800–800 cm−1). (d) Magnified view of regression vector over 2500–1350 nm and (e) scores plot between PC1 and PC2.