| Literature DB >> 35741050 |
Ruth E Carmichael1, Markus Islinger2, Michael Schrader1.
Abstract
Peroxisomes are highly dynamic and responsive organelles, which can adjust their morphology, number, intracellular position, and metabolic functions according to cellular needs. Peroxisome multiplication in mammalian cells involves the concerted action of the membrane-shaping protein PEX11β and division proteins, such as the membrane adaptors FIS1 and MFF, which recruit the fission GTPase DRP1 to the peroxisomal membrane. The latter proteins are also involved in mitochondrial division. Patients with loss of DRP1, MFF or PEX11β function have been identified, showing abnormalities in peroxisomal (and, for the shared proteins, mitochondrial) dynamics as well as developmental and neurological defects, whereas the metabolic functions of the organelles are often unaffected. Here, we provide a timely update on peroxisomal membrane dynamics with a particular focus on peroxisome formation by membrane growth and division. We address the function of PEX11β in these processes, as well as the role of peroxisome-ER contacts in lipid transfer for peroxisomal membrane expansion. Furthermore, we summarize the clinical phenotypes and pathophysiology of patients with defects in the key division proteins DRP1, MFF, and PEX11β as well as in the peroxisome-ER tether ACBD5. Potential therapeutic strategies for these rare disorders with limited treatment options are discussed.Entities:
Keywords: ACBD5; FIS1; PEX11β; division defects; dynamin-related protein 1; membrane fission; mitochondria; mitochondrial fission factor; organelle dynamics; peroxisomes
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Year: 2022 PMID: 35741050 PMCID: PMC9221819 DOI: 10.3390/cells11121922
Source DB: PubMed Journal: Cells ISSN: 2073-4409 Impact factor: 7.666
Figure 1Growth and division of mammalian peroxisomes. Schematic of peroxisome proliferation from pre-existing peroxisomes, via the growth and division cycle. (1) The peroxisomal membrane undergoes initial deformation, requiring the N-terminus of PEX11β to disrupt the lipid bilayer. Extension of this protrusion is supported by lipid flow from the ER at ACBD5-VAP-mediated membrane contacts, via an unknown mechanism potentially involving lipid transfer proteins. (2) Elongation of the protrusion also requires PEX11β, aided by pulling forces from the movement of the peroxisomal MIRO1-motor protein complex along microtubules. (3) The nascent tubule undergoes constriction, allowing oligomerization of the GTPase DRP1 and leading to a characteristic ‘beads-on-a-string’ morphology. DRP1 is recruited to the membrane by binding to its adaptors FIS1 and MFF, which also interact with PEX11β (see cut-out). PEX11β facilitates DRP1-dependent GTP hydrolysis to drive further constriction and ultimately membrane scission, dividing the tubule into multiple ‘daughter’ peroxisomes. (4) These newly formed peroxisomes import new matrix and membrane proteins to become fully functional, mature organelles, and are distributed throughout the cell along microtubules by the MIRO-motor protein complex.
Figure 2Domain structure of human DRP1, MFF, ACBD5, PEX11β and known pathogenic mutations. ACB, Acyl-CoA binding domain; CC, coiled-coil domain; FFAT, two phenylalanines in an acidic tract; GED, GTPase effector domain; Gly rich, glycine-rich region; H, helix; RR, repeat motifs; TMD, transmembrane domain. For details, see text. For information about patients, see Appendix A.
Figure 3Peroxisome morphology in DRP1, MFF, and PEX11β-deficient patient fibroblasts. Cultured patient skin fibroblasts were processed for immunofluorescence and stained with antibodies to PEX14, a peroxisomal membrane marker. Note the hyper-elongated peroxisomes in DRP1 and MFF-deficient cells (dDRP1, dMFF). In contrast to dMFF cells, peroxisomes in dDRP1 cells are able to constrict. Peroxisomes in PEX11β-deficient fibroblasts (dPEX11β) are mainly rod-shaped (A). Note that PEX14 is often mistargeted to mitochondria in dPEX11β cells (B). Peroxisomes in ACBD5-deficient patient fibroblasts (not shown) are indistinguishable from controls. Higher magnifications of boxed regions are shown. Scale bar, 20 µm.
Figure 4Phenotype of an ACBD5-deficient mouse line. (A) General body morphology of a 1-year-old wild type mouse compared to (D) an ACBD5-deficient mouse, which exhibits a prominent kyphosis in the thoracolumbar spine. Computer tomography (CT) analysis of the bone morphology revealed no obvious skeletal malformations in vertebrae of ACBD5-deficient mice (E) compared to wild type mice (B). Likewise, other bone structures (e.g., bones of the skull) show a comparable morphology in wild type (C) and ACBD5-deficient mice (F). Hence, the pathological kyphosis is not caused by compromised bone development but is of a secondary nature. As the animals also show a motor phenotype and degeneration of cerebellar Purkinje cells, the kyphosis is most likely caused by a compromised spinocerebellum inducing an imbalance in the contraction of flexor and extensor trunk musculature.
Figure 5Mathematical model of peroxisome morphology and dynamics. Each peroxisome is represented as a spherical body of radius r and a cylindrical elongation of length L and diameter w. The model considers: (1) membrane lipid flow into the body (e.g., from the ER) (governed by rate α and lipid flow constant γ), (2) growth of the elongation (governed by speed v), (3) peroxisome division (with rate per unit length β), and (4) peroxisome turnover (“pexophagy”) (governed by the peroxisome mean lifetime τ). Snapshot of the model simulation for wild type cells (normal parameters), MFF-deficient cells (dMFF) (reduced division rate) and dMFF cells with reduced lipid flow to simulate silencing of ACBD5 (adapted from [29,50]).
Gene—DNM1L; Protein—dynamin 1-related protein (DRP1); Function—mediates mitochondrial and peroxisomal division. * Data from patient-derived cells or plasma unless otherwise stated.
| Clinical Features | Genotype | Mutation | Organelle Alterations * | Reference |
|---|---|---|---|---|
| Microcephaly, abnormal brain development, optic atrophy hypoplasia, lactic acidosis, | c.1184C>A (p.A395D) De novo heterozygous | Missense mutation in middle domain | Defective fission of mitochondria and peroxisomes, slightly elevated VLCFA and lactate levels but no alterations to mitochondrial metabolism | [ |
| (Mutant overexpression in HeLa/in vitro assays) | [ | |||
| Infantile encephalopathy, lactic acidosis, poor feeding, global developmental delay, hypotonia and status epilepticus | c.1048G>A | Missense mutation in middle domain | (Expression in Drosophila DRP1-deficient cells): (p.G350R): | [ |
| Refractory epilepsy with prolonged survival | c.1085G>A (p.G362D) De novo heterozygous | Missense mutation in middle domain | Hyperfusion of the mitochondrial network | [ |
| Postnatal microcephaly, developmental delay and pain insensitivity | c.1084G>A (p.G362S) De novo heterozygous | Missense mutation in middle domain | Decreased respiratory chain complex IV activity. Impaired fission with elongated mitochondrial structure | [ |
| Epileptic encephalopathy | c.1207C>T (p.R403C) De novo heterozygous | Missense mutation in middle domain | (Expression in mouse embryonic fibroblasts): | [ |
| Mild developmental delay and intellectual disability, paroxysmal dystonia, acute status epilepticus, progressive global cerebral atrophy | Normal mitochondrial and peroxisomal metabolism, elongated mitochondria | [ | ||
| Hyperfused elongated mitochondria with abnormal cristae, reduced efficiency of oxidative phosphorylation, increased mitochondrial membrane potential, elongated peroxisomes | [ | |||
| Encephalopathy in infancy | c.1217T>C (p.L406S) De novo heterozygous | Missense mutation in middle domain | Elongation of peroxisomes and mitochondria | [ |
| Hypotonia and absent respiratory effort. Demyelination and reduction of the number of axons in the sural nerve | c.261dup (p.W88MfsX) + c.385_386del (p.E129KfsX6) compound heterozygous | Frame shift, truncation | Giant mitochondria with abnormal cristae in hippocampal and Purkinje neurons; normal mitochondrial morphology in glial and non-neuronal cells | [ |
| Slowly progressive infantile encephalopathy | c.106A>G (p.S36G) + c.346_347delGA (p.E116KfsX6) compound heterozygous | Missense mutation in GTPase domain | Elongated and constricted mitochondria, elongated peroxisomes with abnormal distribution | [ |
| Isolated dominant optic atrophy | c.5A>C (p.E2A) or c.575C>A (p.A192E) heterozygous, dominantly inherited | Missense mutation in GTPase domain | Dominant negative effect with elongated mitochondrial network | [ |
| Severe infantile parkinsonism, global encephalopathy, hypomyelination | c.1337G>T (p.C446F) De novo heterozygous | Missense mutation in middle domain | Elongated mitochondria, elongated and constricted peroxisomes. Reduced number of mitochondria and peroxisomes. Increased lactate levels | [ |
| Hypotonia, developmental delay, seizures (p.C431Y), optic atrophy (p.G32A) | c.1292G>A (p.C431Y) or c.95G>C (p.G32A) De novo heterozygous | Missense mutation in middle domain (p.C431Y) or GTPase domain (p.G32A) | (p.G32A): Dominant negative effect with elongated, highly connected mitochondrial network. No alterations to peroxisomes | [ |
| (p.G32A): Hyperfused elongated mitochondria with abnormal cristae, reduced efficiency of oxidative phosphorylation, increased mitochondrial membrane potential, elongated peroxisomes | [ | |||
| Hypotonia, developmental delay, abnormal movement | c.305C>T (p.T115M) homozygous | Missense mutation in GTPase domain | Elongated mitochondria, reduced mtDNA content, reduced mitochondrial respiration, impaired cell growth, reduced DRP1 oligomerization | [ |
| Static encephalopathy, developmental delay, seizures, nystagmus | c.2072A>G, (p.Y691C) De novo heterozygous | Missense mutation in GTPase effector domain | Normal peroxisomal metabolism | [ |
| Severe, early-onset epileptic encephalopathy, developmental delay, progressive cerebral atrophy | c.668G>T (p.G223V) or c.1109T>G (p.F370C) De novo heterozygous | Missense mutation in GTPase domain (p.G223V) or middle domain (p.F370C) | (p.G223V): mixed population of hyperfused and swollen/rod-shaped mitochondria | [ |
| Psychomotor developmental delay, axonal sensory neuropathy leading to global hypotonia and severe ataxia | c.436G>A (p.D146N) De novo heterozygous | Missense mutation in GTPase domain | Dominant negative effect with hyperfused ‘balloon-like’ mitochondrial network, reduced mitochondrial turnover; elongation of peroxisomes, increase in peroxisomal mass | [ |
Gene—MFF; Protein—mitochondrial fission factor; Function—recruitment of DRP1 to mitochondria and peroxisomes. * Data from patient-derived cells or plasma unless otherwise stated.
| Clinical Features | Genotype | Mutation | Organelle Alterations * | Reference |
|---|---|---|---|---|
| Developmental delay, abnormal intensity on brain MRI of globus pallidus, motor and speech deficits, mild hypertonia, borderline microcephaly and pale optic disc | c.190C>T | Nonsense mutation, truncation before TMD | Elongated peroxisomes and mitochondria | [ |
| Elongated peroxisomes, normal peroxisome metabolism, altered peroxisome redox environment | [ | |||
| Developmental delay, peripheral neuropathy, optic atrophy, and Leigh-like encephalopathy | c.184dup | Nonsense mutation/frame shift, truncation before TMD | Elongation of peroxisomes and mitochondria, increased mitochondrial branching, normal mitochondrial and peroxisomal metabolism | [ |
| c.453_454del | Frame shift, truncation before TMD | |||
| Epileptic encephalopathy, neurological regression, severe intellectual disability, microcephaly, tetraparesis, optic atrophy | c.892C>T (p.R298X) homozygous | Nonsense mutation, truncation before TMD | Elongation of peroxisomes, constricted elongated mitochondria, normal mitochondrial and peroxisomal metabolism | [ |
| Developmental delay, neuroregression, microcephaly, optic atrophy, hearing defects | c.433C>T (p.R145X) | Nonsense mutation, truncation before TMD | Rounded, swollen mitochondria in lymphoblastoid cells | [ |
| Spastic cerebral palsy, global developmental delay, bilateral thalamic lesions. (Homozygous mother and sibling asymptomatic) | c.19_20AG>TT (p.S7F) homozygous | Missense mutation in cytoplasmic N-terminus | Normal lactate levels in serum | [ |
Gene—PEX11β; Protein—Peroxin 11β; Function—regulator of peroxisome elongation and division. * Data from patient-derived cells or plasma unless otherwise stated.
| Clinical Features | Genotype | Mutation | Organelle Alterations * | Reference |
|---|---|---|---|---|
| Mild intellectual disability, congenital cataracts, progressive hearing loss and polyneuropathy | c.64C>T (p.Q22X) homozygous | Nonsense mutation, truncation | Enlarged and slightly elongated peroxisomes, normal peroxisomal metabolism, matrix protein import compromised in ~10% of cells. Partial rescue of peroxisome phenotype by PEX11γ expression | [ |
| Mild intellectual disability, congenital cataracts, developmental delay, short stature, hearing defects | c.235C>T (p.R79X) homozygous or c.136C>T (p.R46X) homozygous or c.595C>T (p.R199X) heterozygous + ex1-3 del heterozygous | Nonsense mutation, truncation | Normal peroxisomal metabolism except | [ |
| Bilateral nystagmus, congenital cataracts with myopia, strabismus, high muscle tone, mental retardation | c.277C>T (p.R93X) homozygous | Nonsense mutation, truncation | Normal peroxisome metabolism | [ |
Gene—ACBD5; Protein—Acyl-CoA binding domain containing protein 5; Function—involved in peroxisome–ER membrane association, VLCFA transfer into peroxisomes. * Data from patient-derived cells or plasma unless otherwise stated.
| Clinical Features | Genotype | Mutation | Organelle Alterations * | Reference |
|---|---|---|---|---|
| Cone-rod dystrophy, spastic paraparesis, leukodystrophy | c.1205 + 1G>A | Frame shift, truncation | Impaired β-oxidation of VLCFA in peroxisomes, normal plasmalogen synthesis | [ |
| Retinal dystrophy, progressive leukodystrophy and microcephaly, ataxia, dysarthria, hypomyelination with diffuse abnormality in deep white matter | c.626-689_937-234delins936+1075_c.936+1230inv (p.D208VfsX30) homozygous | Exon 7/8 deletion | Normal presence of import-competent peroxisomes. Increased VLCFA levels, reduced C26:0 β-oxidation, reduced plasmalogen biosynthesis | [ |
| Leukodystrophy, nystagmus, cone-rod dystrophy, spastic paraparesis, psychomotor developmental regression | c.1467G>A, (p.W489X) homozygous | Nonsense mutation, truncation | Elevated C26:0, C24:0/C22:0, and C26:0/C22:0 in plasma, decreased C22:0, C24:0 levels and phytanic acid in plasma | [ |
| Leukodystrophy, retinal dystrophy, nystagmus | c.1297C>T, (p.R433X) homozygous | Nonsense mutation, truncation | Elevated C26:0 in plasma (patient 1), elevated C24:0 and C22:0 in plasma (patient 2) | [ |