| Literature DB >> 35739580 |
Sujata Dey1, Ajaya Kumar Rout1, Bijay Kumar Behera2, Koushik Ghosh3.
Abstract
It is undeniable that plastics are ubiquitous and a threat to global ecosystems. Plastic waste is transformed into microplastics (MPs) through physical and chemical disruption processes within the aquatic environment. MPs are detected in almost every environment due to their worldwide transportability through ocean currents or wind, which allows them to reach even the most remote regions of our planet. MPs colonized by biofilm-forming microbial communities are known as the ''plastisphere". The revelation that this unique substrate can aid microbial dispersal has piqued interest in the ground of microbial ecology. MPs have synergetic effects on the development, transportation, persistence, and ecology of microorganisms. This review summarizes the studies of plastisphere in recent years and the microbial community assemblage (viz. autotrophs, heterotrophs, predators, and pathogens). We also discussed plastic-microbe interactions and the potential sources of plastic degrading microorganisms. Finally, it also focuses on current technologies used to characterize those microbial inhabitants and recommendations for further research.Entities:
Keywords: Biofilm assemblage; Plastic degrading microbes; Plastic-microbe interaction; Plastisphere; Plastisphere characterization
Year: 2022 PMID: 35739580 PMCID: PMC9230103 DOI: 10.1186/s40793-022-00430-4
Source DB: PubMed Journal: Environ Microbiome ISSN: 2524-6372
Plastisphere associated bacterial species
| Bacterial species | Type of plastic | Study area | Method | References |
|---|---|---|---|---|
Bacteroidetes, Proteobacteria, Cyanobacteria, Acidobacteria, and Actinobacteria | PP, PET, PE | South China Sea; surface | V4-V5 16S rRNA sequencing | [ |
Gammaproteobacteria, Actinobacteria, Opitutae, Alphaproteobacteria, and Sphingobacteria | PE, PP | Baltic, Sargasso and Mediterranean seas; surface | V3-V4 16S rRNA sequencing | [ |
Thalassospiraceae, Alteromonadaceae, and Vibrionaceae | PET | Porthcawl beach | V4-V5 16S rRNA sequencing | [ |
| Flavobacteriaceae and Rhodobacteriaceae | PVC | Atlantic Ocean, Indian Ocean, Mediterranean Sea, and; seafloor | V4-V5 16S rRNA sequencing | [ |
| PS | Seawater | V4 16S rRNA sequencing | [ | |
| PET, PE | Huiquan Bay (Qingdao, China); surface | V4-V5 16S rRNA sequencing | [ | |
| Methylologellaceae, Micrococcaceae, Pseudomonadaceae, Colwelliaceae, Haliangiaceae, Halieceaea | PE | North Atlantic | V4 16S rRNA sequencing | [ |
Flavobacteriales, Cytophagales, Rhodobacterales, Rickettsiales, Chitinophagales, Alteromonadales, and Oceanospirillales | PE, PP, PE | Mediterranean Sea; surface | V4–V5 16S rRNA sequencing | [ |
| Proteobacteria and Bacteriodes | PE, PUF, PVC, PLA | York River estuary | V4–V5 16S rRNA sequencing | [ |
Saprospirae, Flavobacteriia, and Cytophagia | PETE, HDPE, PVC, LDPE, PP, PS | Coast of Bocas del Toro; sea surface | V4–V5 16S rRNA sequencing | [ |
Bacteroidetes, Firmicutes, Proteobacteria, and Cyanobacteria | – | Hikine Island, Japan | V4–V5 16S rRNA sequencing | [ |
Proteobacteria, Bacteroidetes and Cyanobacteria | – | Herzliya marina; surface | full 16S rRNA sequencing | [ |
| Alphaproteobacteria, Gammaproteobacteria and Bacteroidia | PE | Offshore of Yantai, China | V4 16S rRNA sequencing | [ |
| – | Mediterranean Sea; surface and sediment | V3-V4 16S rRNA | [ | |
| Actinobacteria, Cyanobacteria and Proteobacteria | – | East China Sea; deep water | V5–V6 16S rRNA sequencing | [ |
| Erythrobacteraceae, Cyanobacteria, and Rhodobacteraceae | PE, PP, PS | East China Sea; surface | V3-V4 16S rRNA sequencing | [ |
| PE, PET | Arabian Sea; surface | V4 16S rRNA sequencing | [ | |
PE, PP, PS, PET, PLA | North Sea, Germany; surface | V3-V4 16S rRNA sequencing | [ | |
| Alphaproteobacteria, Cyanobacteria, Flavobacteria and Gammaproteobacteria | – | Mediterranean Sea; surface | V3-V5 16S rRNA sequencing | [ |
| Alphaproteobacteria, Cyanobacteria, Flavobacteria, and Actinobacteria | PE | Mediterranean Sea; surface | V3-V5 16S rRNA sequencing | [ |
| Rhodobacterales, Streptomycetales, Rhizobiales, and Cyanobacteria | North Atlantic subtropical gyre; seafloor | V4 16S rRNA sequencing | [ | |
| Alphaproteobacteria and Gammaproteobacteria | PE | North Sea; seafloor | V3–V4 16S rRNA | [ |
| Cryomorphaceae, Flavobacteriaceae, Saprospiraceae | PET | North Sea; surface | V4 16S rRNA sequencing | [ |
| Bryozoa, Alphaproteobacteria, Cyanobacteria, and Bacteroidetes | – | North Pacific subtropical Gyre; surface | Metagenomic sequencing | [ |
Plastisphere associated fungal and phototroph species
| Fungal species | Type of plastic | Study area | Method | References |
|---|---|---|---|---|
| PE | Herzliya marina; surface | 18S rRNA and tufA | [ | |
| PE | Herzliya marina; surface | ITS | [ | |
| PE, PA, PU, PP, PS | western South Atlantic and Antarctic Peninsula; surface | V9, V4 18S rRNA and ITS2 | [ | |
Diatoms, Dinoflagellates, red, green, and brown algae | PETE, HDPE, PVC, LDPE, PP, PS | Coast of Bocas del Toro; surface | V4 18S rRNA sequencing | [ |
| PE, PS | Baltic Sea; surface | V4 18S rRNA sequencing | [ | |
Haptophyta, Cryptophyceae, and Chloroplastida | PE, PS | Baltic Sea; surface | V4 18S rRNA sequencing | [ |
| Archaeplastida | – | East China Sea; deepwater | V4 18S rRNA sequencing | [ |
| Chytridiomycetes | PE, PP, PS, PET, PLA | North Sea, Germany | V4 18S rRNA sequencing | [ |
Cryptomycota, Chytridiomycota, and Ascomycota | PE, PS | Baltic Sea; surface | V4 18S rRNA sequencing | [ |
| PE | Belgian part of the North Sea; seafloor | ITS2 | [ | |
| Bacillariophytina, Coscinodiscophytina | PET | North Sea; surface | V9 18S rRNA sequencing | [ |
Fig. 1Conceptual illustration of the diverse plastisphere community, presenting a microbial ecosystem inhabiting plastic debris. Community members include phototrophs, heterotrophs, predators, and pathogens. Hypothesis drawn by a metagenomic study [92] on metabolic potential of plastisphere residents concludes that microorganisms found on plastic debris possess discrete sets of genes compared to those in a surrounding aquatic environment. The metabolic capacity and functional diversity of the plastisphere microbial community are not properly explained. Metagenome rRNA gene reads between 40 and 99% obtained from plastic debris mapped to eukaryotic rRNA, though it is unclear if the represented data is the actual abundances as eukaryotic microbial rRNA genes may consist of a significant number of disparate copies [133]
Fig. 2Depiction of plastic colonization in an oceanic environment in an abstract form; plastic degrading microbes (PDM) might belong to the pioneer community, especially if oligomeric and polymeric additives are available as carbon and energy sources. Once these sources are exhausted, the specialized microbes which can utilize the labile photosynthate produced by phototrophs will outcompete the PDM [158]
Fig. 3A Several physicochemical and biological processes interact to degrade conventional plastics. Most of the perceptions regarding biological processes are laboratory-cultured strains and consortia based, and many of these strains are present in terrestrial habitats. This diagram depicted a hypothetical representation of the processes that lead to plastic deterioration in aquatic environments like the open ocean. Floating plastic waste undergoes different types of degradation in the presence of sunlight. The visible spectrum facilitates thermal degradation, whereas the infrared radiation leads to the thermal oxidation of polymer chains, and UV is responsible for the photodegradation through the bond scission mechanism. B Biological pathways for polymer degradation involve the action of microorganisms growing on its surface and enzymatic processes leading to polymer hydrolysis into oligomers and eventually monomers. Hydroxyquinone, alkB, laccase, oxygenase, peroxide, etc., are reported enzymes that break down highly stable backbones of non-hydrolyzable polymers. Hydrolyzable polymers are comparatively susceptible to enzyme-mediated (PET hydrolase, esterase, cutinase, etc.) catalysis [3]
Technologies to characterize the plastisphere and study the associated microbes
| Type | Size | Shape | Characterization area | Tools | References |
|---|---|---|---|---|---|
| PE,PP,PS,PVC,PET,PCL,PA | < 50 µm/1–50 µm | Fragment | Quantitative & qualitative composition of microparticles | Raman microspectroscopy | [ |
| Plastic particle-Heavy metal contamination | ICP-MS | ||||
| PET | > 300 µm | Fibre | Characterization & functional group identification of microplastics | FTIR | [ |
| Morphological & physical characterization | Stereomicroscopy | ||||
| PS,PS/PMMA blend | < 100 nm, 5–10 nm | Thin film | Chemical characterization & identification | AFM-IR | [ |
| PP,PS,PVC | > 0.1 µm | Pellet, granule and powder | Identification & semi-quantification of microplastics | Py-GCToF | [ |
| PE,PP,PS,PVC,PA,EPDM | 0.5–0.25 mm | Fragment and fibre | Quantification of microplastics | Stereomicroscopy | [ |
| Identification of polymer composition | Py-GC/MS | ||||
| PE,PP,PS,PVC,PET,PC,PA,LDPE,HDPE | < 200 µm | Fragment | Rapid identification & quantification of microplastics | Flow cytometry | [ |
| PE,OXO,AA-OXO,PHBV | 9 mm | Fragment | Surface roughness & hydrophobicity | Tensiometry | [ |
| PP,PS,HDPE,LDPE | 4.5 mm | Fragment | Coarseness | Tensiometry | [ |
| PE,PS,PP,PA,PVC | 75–180 µm | Powder | Surface morphology characterization | SEM | [ |
| Crystalline composition of microplastic | XRD | ||||
| Microbial colonization | Microfluidics | [ | |||
| Surface covered by microbial cells & extracellular polymeric substances (EPS) | Epifluorescence microscopy | [ | |||
| Surface colonization | AFM | ||||
| Microbial extracellular polymeric substances (EPS) measurement | CLSM | [ | |||
| Microbial colonization | SEM | ||||
| Microbial attachment | Microfluidics | [ | |||
| Differential gene expression of microbes under different concentrations of heavy metals | RT-PCR | [ | |||
| Measuring changes in community structure & function | 16S rRNA profiling | [ | |||
| Metatranscriptomics | |||||
| Quantification of ARG & mobile genetic elements (MGE) | HT-qPCR & ARG ChIP | [ | |||
| Taxonomic & evolutionary trait analysis | WGS | [ | |||
| Mutation in ARGs & MRGs | WGS | [ | |||
| Evolutionary study | GREACE | [ | |||
PE Polyethylene; PP Polypropylene; PS Polystyrene; PVC Polyvinyl chloride; PET Polyethylene terephthalate; PCL Polycaprolactone; PA Polyamide; PMMA Poly(methyl methacrylate); EPDM Ethylene propylene diene monomer; LDPE Low-density polyethylene; HDPE High-density polyethylene; OXO additivated PE with pro-oxidant; AA-OXO artificially aged OXO; PHBV Poly(3-hydroxybutyrate-co-3-hydroxyvalerate); PUF Polyurethane foam; PLA Polylactic acid; PU Polyurethane; ICP-MS Inductively coupled plasma mass spectrometry; FTIR Fourier transform infrared microscopy; AFM-IR Atomic force microscope-infrared spectroscopy; Py-GCToF Pyrolysis–gas chromatography time of flight mass spectrometry; Py-GC/MS Pyrolysis gas chromatography mass spectrometry; SEM Scanning electron microscopy; XRD X-ray diffraction; AFM Atomic force microscopy; CLSM Confocal laser scanning microscopy; RT-PCR Reverse transcription polymerase chain reaction; HT-qPCR High throughput quantitative real-time PCR; ARG ChIP Antibiotic resistance genes chromatin immunoprecipitation; WGS Whole-genome sequencing; GREACE Genome replication engineering assisted continuous evolution