Literature DB >> 35695839

RNA-binding proteins direct myogenic cell fate decisions.

Joshua R Wheeler1,2,3,4,5, Oscar N Whitney6, Thomas O Vogler2,7,8, Eric D Nguyen2,9, Bradley Pawlikowski7, Evan Lester1,2, Alicia Cutler7, Tiffany Elston7, Nicole Dalla Betta7, Kevin R Parker10, Kathryn E Yost10, Hannes Vogel4, Thomas A Rando11,12,13, Howard Y Chang10,14, Aaron M Johnson9,15, Roy Parker3, Bradley B Olwin7.   

Abstract

RNA-binding proteins (RBPs), essential for skeletal muscle regeneration, cause muscle degeneration and neuromuscular disease when mutated. Why mutations in these ubiquitously expressed RBPs orchestrate complex tissue regeneration and direct cell fate decisions in skeletal muscle remains poorly understood. Single-cell RNA-sequencing of regenerating Mus musculus skeletal muscle reveals that RBP expression, including the expression of many neuromuscular disease-associated RBPs, is temporally regulated in skeletal muscle stem cells and correlates with specific stages of myogenic differentiation. By combining machine learning with RBP engagement scoring, we discovered that the neuromuscular disease-associated RBP Hnrnpa2b1 is a differentiation-specifying regulator of myogenesis that controls myogenic cell fate transitions during terminal differentiation in mice. The timing of RBP expression specifies cell fate transitions by providing post-transcriptional regulation of messenger RNAs that coordinate stem cell fate decisions during tissue regeneration.

Entities:  

Keywords:  RNA splicing; RNA-binding protein; mouse; post-transcriptional regulation; regeneration; regenerative medicine; skeletal muscle; splicing network; stem cells

Mesh:

Substances:

Year:  2022        PMID: 35695839      PMCID: PMC9191894          DOI: 10.7554/eLife.75844

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.713


  69 in total

Review 1.  Muscle stem cells in development, regeneration, and disease.

Authors:  Xiaozhong Shi; Daniel J Garry
Journal:  Genes Dev       Date:  2006-07-01       Impact factor: 11.361

Review 2.  Nuclear functions of heterogeneous nuclear ribonucleoproteins A/B.

Authors:  Yaowu He; Ross Smith
Journal:  Cell Mol Life Sci       Date:  2009-04       Impact factor: 9.261

3.  RNA-targeted drugs for neuromuscular diseases.

Authors:  Alessandra Ferlini; Aurelie Goyenvalle; Francesco Muntoni
Journal:  Science       Date:  2021-01-01       Impact factor: 47.728

4.  Global profiling of hnRNP A2/B1-RNA binding on chromatin highlights LncRNA interactions.

Authors:  Eric D Nguyen; Maggie M Balas; April M Griffin; Justin T Roberts; Aaron M Johnson
Journal:  RNA Biol       Date:  2018-07-25       Impact factor: 4.652

Review 5.  Handshakes and Fights: The Regulatory Interplay of RNA-Binding Proteins.

Authors:  Erik Dassi
Journal:  Front Mol Biosci       Date:  2017-09-29

6.  Determining cell type abundance and expression from bulk tissues with digital cytometry.

Authors:  Aaron M Newman; Chloé B Steen; Chih Long Liu; Andrew J Gentles; Aadel A Chaudhuri; Florian Scherer; Michael S Khodadoust; Mohammad S Esfahani; Bogdan A Luca; David Steiner; Maximilian Diehn; Ash A Alizadeh
Journal:  Nat Biotechnol       Date:  2019-05-06       Impact factor: 54.908

7.  Widespread RNA metabolism impairment in sporadic inclusion body myositis TDP43-proteinopathy.

Authors:  Andrea Cortese; Vincent Plagnol; Stefen Brady; Roberto Simone; Tammaryn Lashley; Abraham Acevedo-Arozena; Rohan de Silva; Linda Greensmith; Janice Holton; Michael G Hanna; Elizabeth M C Fisher; Pietro Fratta
Journal:  Neurobiol Aging       Date:  2013-12-30       Impact factor: 4.673

8.  Compound loss of muscleblind-like function in myotonic dystrophy.

Authors:  Kuang-Yung Lee; Moyi Li; Mini Manchanda; Ranjan Batra; Konstantinos Charizanis; Apoorva Mohan; Sonisha A Warren; Christopher M Chamberlain; Dustin Finn; Hannah Hong; Hassan Ashraf; Hideko Kasahara; Laura P W Ranum; Maurice S Swanson
Journal:  EMBO Mol Med       Date:  2013-10-08       Impact factor: 12.137

9.  RBFOX1 cooperates with MBNL1 to control splicing in muscle, including events altered in myotonic dystrophy type 1.

Authors:  Roscoe Klinck; Angélique Fourrier; Philippe Thibault; Johanne Toutant; Mathieu Durand; Elvy Lapointe; Marie-Laure Caillet-Boudin; Nicolas Sergeant; Geneviève Gourdon; Giovanni Meola; Denis Furling; Jack Puymirat; Benoit Chabot
Journal:  PLoS One       Date:  2014-09-11       Impact factor: 3.240

10.  HNRNPA1-induced spliceopathy in a transgenic mouse model of myotonic dystrophy.

Authors:  Moyi Li; Yan Zhuang; Ranjan Batra; James D Thomas; Mao Li; Curtis A Nutter; Marina M Scotti; Helmut A Carter; Zhan Jun Wang; Xu-Sheng Huang; Chuan Qiang Pu; Maurice S Swanson; Wei Xie
Journal:  Proc Natl Acad Sci U S A       Date:  2020-02-21       Impact factor: 11.205

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  1 in total

1.  RNA-binding proteins direct myogenic cell fate decisions.

Authors:  Joshua R Wheeler; Oscar N Whitney; Thomas O Vogler; Eric D Nguyen; Bradley Pawlikowski; Evan Lester; Alicia Cutler; Tiffany Elston; Nicole Dalla Betta; Kevin R Parker; Kathryn E Yost; Hannes Vogel; Thomas A Rando; Howard Y Chang; Aaron M Johnson; Roy Parker; Bradley B Olwin
Journal:  Elife       Date:  2022-06-13       Impact factor: 8.713

  1 in total

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