| Literature DB >> 35643046 |
David A Nyenhuis1, Charles D Schwieters2, Nico Tjandra3.
Abstract
Paramagnetic NMR experiments, including the pseudocontact shift experiment, have seen increasing use due to recently developed probes and labeling strategies. The pseudocontact shift experiment can provide valuable intra- or inter-molecular distance and orientation information. However, the use of 1H/13C or 1H/15N PCS data in structure calculations is currently complicated by the contribution of residual chemical shift anisotropy to the 13C or 15N datasets. Here, we present a corrected PCS energy term for the software package Xplor-NIH with the appropriate residual chemical shift anisotropy correction and show its suitability for model refinements of ubiquitin labeled at residue 57 with a Tm-M8-SPy tag. For data taken at 800 MHz, the improvement with the corrected energy term is sufficient to make the quality of the fit for the 15N dataset comparable to that of the 1H dataset, for which no correction is needed. The corrected energy term is expected to become more relevant with increased use of higher field instruments and as new paramagnetic probes with larger magnetic susceptibility tensors continue to be developed. Published by Elsevier Inc.Entities:
Keywords: Pseudocontact shift; Residual chemical shift anisotropy; Structure refinement; Ubiquitin; Xplor-NIH
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Year: 2022 PMID: 35643046 PMCID: PMC9233152 DOI: 10.1016/j.jmr.2022.107213
Source DB: PubMed Journal: J Magn Reson ISSN: 1090-7807 Impact factor: 2.734