Dong-Qin Dai1, Nalin N Wijayawardene1,2, Monika C Dayarathne3, Jaturong Kumla4, Li-Su Han1, Gui-Qing Zhang1, Xian Zhang1, Ting-Ting Zhang1, Huan-Huan Chen1. 1. Center for Yunnan Plateau Biological Resources Protection and Utilization, Yunnan Engineering Research Center of Fruit Wine, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China. 2. Section of Genetics, Institute for Research and Development in Health and Social Care, No: 393/3, Lily Avenue, Off Robert Gunawardane Mawatha, Battaramulla 10120, Sri Lanka. 3. Postgraduate Institute of Agriculture (PGIA), University of Peradeniya, Peradeniya 20400, Sri Lanka. 4. Research Centre of Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai 50200, Thailand.
Abstract
During the ongoing investigation of bambusicolous ascomycetous fungi in Yunnan, China, 24 specimens belonging to the family Roussoellaceae were collected and identified based on morphological features and phylogenetic support. Maximum-likelihood (ML) analyses and Bayesian analyses were generated based on the combined data set of ITS, LSU, tef1, and rpb2 loci. The phylogenetic analyses revealed four novel lineages in Roussoella s. str.; thus, we introduced four new species viz., Roussoella multiloculate sp. nov., R. papillate sp. nov., R. sinensis sp. nov., and R. uniloculata sp. nov. Their morphological characters were compared with the known Roussoella taxa, which lack sequence data in the GenBank. Asexual morphs of R. kunmingensis and R. padinae were recorded from dead bamboo culms in China (from the natural substrates) for the first time. Neoroussoella bambusae, Roussoella japanensis, R. nitidula, R. padinae, R. scabrispora, and R. tuberculate were also reported as the first records from China. All new taxa are described and illustrated in detail. Plates are provided for new reports.
During the ongoing investigation of bambusicolous ascomycetous fungi in Yunnan, China, 24 specimens belonging to the family Roussoellaceae were collected and identified based on morphological features and phylogenetic support. Maximum-likelihood (ML) analyses and Bayesian analyses were generated based on the combined data set of ITS, LSU, tef1, and rpb2 loci. The phylogenetic analyses revealed four novel lineages in Roussoella s. str.; thus, we introduced four new species viz., Roussoella multiloculate sp. nov., R. papillate sp. nov., R. sinensis sp. nov., and R. uniloculata sp. nov. Their morphological characters were compared with the known Roussoella taxa, which lack sequence data in the GenBank. Asexual morphs of R. kunmingensis and R. padinae were recorded from dead bamboo culms in China (from the natural substrates) for the first time. Neoroussoella bambusae, Roussoella japanensis, R. nitidula, R. padinae, R. scabrispora, and R. tuberculate were also reported as the first records from China. All new taxa are described and illustrated in detail. Plates are provided for new reports.
Entities:
Keywords:
bambusicolous ascomycetes; new records; new taxa; phylogeny; taxonomy
The family Roussoellaceae Liu et al. [1] accommodates three genera, viz., Neoroussoella Liu et al., Roussoella Sacc. and Roussoellopsis Hino and Katum. Later, Jaklitsch and Voglmayr [2] synonymized Roussoellaceae under Thyridariaceae based on the multigene analysis of limited taxa. Tibpromma et al. [3] reinstated Roussoellaceae; treating Roussoellaceae and Thyridariaceae as distinct families within Pleosporales. Subsequent studies confirmed this separation using additional taxa and combining morphological and phylogenetic analyses [4,5,6,7,8]. Currently, twelve genera have been accepted (viz., Appendispora Hyde, Cytoplea Bizz. and Sacc., Elongatopedicellata Zhang et al., Immotthia Barr, Neoroussoella, Pararoussoella Wanas. et al., Pseudoneoconiothyrium Wanas et al., Pseudoroussoella Mapook and Hyde, Roussoella Sacc., Roussoellopsis Hino and Katum., Setoarthopyrenia Mapook and Hyde and Xenoroussoella Mapook and Hyde) in Roussoellaceae [9].Roussoella (the type of genus of Roussoellaceae) was introduced by Saccardo and Paoletti [10] with R. nitidula Sacc. and Paol. as the type species recorded from bamboo in Malacca, Malaysia. Höhnel [11] proposed that Dothidea hysterioides Ces. is the former name for this taxon; thus, being transferred to the Roussoella genus, i.e., Roussoella hysterioides (Ces.) Höhn. However, Aptroot [12] and Müller and Arx [13] assigned Roussoella to Amphisphaeriaceae, which comprises cylindrical and unitunicate asci, immersed ascostromata, two-celled and brown ascospores. Aptroot [12] described Roussoella asci as unitunicate and moved the three species to this genus, while Aptroot [14] modified his concept of Roussoella asci and considered them as bitunicate. Roussoella is characterized by immersed, large, and loculate ascostromata, cylindrical and bitunicate asci, brown, fusiform to ellipsoidal, ornamented, and two-celled ascospores surrounded by a sheath [1,15,16]. Roussoella mainly occurs on gramineous plants, with most species found on bamboo and palms [1,16,17].Neoroussoella is a monotypic genus, distinct from Roussoella, with uniloculate ascomata, absence of a clypeus, and an asexual morph forming hyaline to brown, oblong to ellipsoidal, and smooth-walled phoma-like conidia [1,18]. Further, Neoroussoella is characterized by a distinct asexual morph producing relatively smaller (3–4 × 1.5–2 μm), hyaline conidia with smooth wall [1]. Currently, this genus comprises eleven species [19,20].The aims of this study are to introduce four new species, viz. R. multiloculate, R. papillate, R. sinensis, and R. uniloculata. In addition, the asexual morphs of R. kunmingensis and R. padinae isolated from dead bamboo culms (from a natural substrate) are also described for the first time. Finally, the species Neoroussoella bambusae, Roussoella japanensis, R. nitidula, R. padinae, R. scabrispora, and R. tuberculate are reported for the first time in China.
2. Materials and Methods
2.1. Fungal Sampling and Morphology
Bamboo culms were collected in Yunnan, China, and conserved in protection bags for two days until they arrived at the laboratory. Samples were examined, and single spore isolation was performed as previously described [17]. Morphological characters were examined using water slides and photographed (Olympus BX53 DIC compound microscope with an Olympus DP74 camera). Fruiting bodies, such as ascostromata and conidiomata, were also photographed (Leica S8AP0 stereomicroscope with an HDMI 200C camera). Measurements were registered (Tarosoft (R) Image Frame Work 80 software). Specimens and living cultures were deposited at the Herbarium of Guizhou Medical University (GMB) and Guizhou Medical University Culture Collection (GMBCC) in Guiyang, China. Duplicates of holotypes and ex-type cultures were also deposited at the herbarium of Research Institute of Resource Insects, Chinese Academy of Forestry (IFRD), and Research Institute of Resource Insects, Chinese Academy of Forestry Culture Collection (IFRDCC) in Kunming, China. Index Fungorum [20] numbers were provided for newly introduced taxa.
2.2. DNA Extraction, Polymerase Chain Reaction (PCR) Amplification, and Phylogeny
Pure cultures were grown on PDA media, for 30–40 days, at 28 °C, in the dark. Fresh mycelium was scraped using a surgical knife and placed into a 1.5 mL centrifuge tube, and ground into powder using liquid nitrogen. Genomic DNA was extracted following the instruction book of the Biospin Fungus Genomic DNA Extraction Kit (BioFlux®).Information of primers used for the amplification of internal transcribed spacers (ITS), small subunit rDNA (SSU), large subunit rDNA (LSU), translation elongation factor 1-α gene region (tef1), and RNA polymerase II second largest subunit (rpb2) genes is presented in Table 1. ITS, SSU, LSU, tef1, and rpb2 loci amplifications were performed by polymerase chain reaction (Eppendorf Mastercycler nexus gradient) according to the conditions presented in Table 2 [17]. Both forward and reverse primers (Table 1) were used for sequencing and these primers were the same as those used for amplification. The PCR products were sequenced, and the sequences were deposited in GenBank, as shown in Table 3.
Table 1
ITS, SSU, LSU, tef1, and rpb2 loci primers information.
ITS, SSU, LSU, tef1, and rpb2 loci PCR conditions.
Genes
Initial Period
Cycles, Denaturation, Annealing and Elongation
Final Extension
References
ITS, LSU, SSU, tef1
94 °C for 3 min
35 cycles of denaturation at 94 °C for 30 s, annealing at 55 °C for 50 s, elongation at 72 °C for 1 min
72 °C for 10 min
[17]
rpb2
95 °C for 5 min
40 cycles of denaturation at 95 °C for 1 min, annealing at 52 °C for 2 min, elongation at 72 °C for 90 s
72 °C for 10 min
[17]
Table 3
Isolates or specimens used in this study and their GenBank accession numbers. The newly generated sequences are marked with asterisk “★” and ex-type strains are in bold, “-” means sequences data are unavailable in the GenBank database.
Taxa
Strain/Voucher No.
GenBank Accession Numbers
ITS
LSU
tef1
rpb2
Arthopyrenia sp.
UTHSC DI16-362
LT796905
LN907505
LT797145
LT797065
Arthopyrenia sp.
UTHSC DI16-334
LT796887
LN907477
LT797127
-
Neoroussoella alishanense
FU31016
MK503816
MK503822
MK336181
MN037756
Neoroussoella bambusae
MFLUCC 11-0124
KJ474827
KJ474839
KJ474848
KJ474856
Neoroussoella bambusae ★
GMBCC1116
OM891810
OM884022
ON098358
ON098377
Neoroussoella bambusae ★
GMBCC1118
OM891812
OM801294
ON098359
ON098376
Neoroussoella entadae
MFLUCC 15-0098
MH275075
MH260309
-
-
Neoroussoella heveae
MFLUCC 17-0338
MH590693
MH590689
-
-
Neoroussoella heveae
MFLUCC 17-2069
MT310634
MT214589
MT394647
MT394703
Neoroussoella lenispora
GZCC 16-0020
-
KX791431
-
-
Neoroussoella leucaenae
MFLUCC 18-1544
MK347767
MK347984
MK360067
MK434876
Neoroussoella solani
CPC 26331
KX228261
KX228312
-
-
Pararoussoella mangrovei
MFLUCC 16-0424
MH025951
MH023318
MH028246
MH028250
Pararoussoella mukdahanensis
KUMCC 18-0121
MH453489
MH453485
MH453478
MH453482
Pararoussoella mukdahanensis
MFLUCC 11-0201
KU940129
KU863118
-
-
Pararoussoella rosarum
MFLUCC 17-0796
NR_157529
NG059872
MG829224
-
Parathyridaria percutanea
CBS 128203
KF322117
KF366448
KF407988
KF366453
Parathyridaria percutanea
CBS 868.95
KF322118
KF366449
KF407987
KF366452
Parathyridaria ramulicola
CBS 141479
KX650565
KX650565
KX650536
KX650584
Parathyridaria ramulicola
MF4
KX650564
KX650564
KX650535
-
Parathyridaria robiniae
MFLUCC 14-1119
KY511142
KY511141
KY549682
-
Pseudoneoconiothyrium euonymi
CBS 143426
MH107915
MH107961
-
MH108007
Pseudoneoconiothyrium rosae
MFLUCC 15-0052
NR_157523
NG059868
-
-
Pseudoroussoella chromolaenae
MFLUCC 17-1492
MT214345
MT214439
MT235769
-
Pseudoroussoella elaeicola
MFLUCC 17-1483
MT214348
MT214442
MT235772
MT235808
Pseudoroussoella elaeicola
MFLUCC 15-0276b
MH742330
MH742327
-
-
Pseudoroussoella elaeicola
MFLUCC 15-0276a
MH742329
MH742326
-
-
Roussoella angusta
MFLUCC 15-0186
-
KT281979
-
-
Roussoella aquatica
MFLUCC 18-1040
NR171975
NG073797
-
-
Roussoella arundinacea
CBS 146088
MT223838
MT223928
MT223723
-
Roussoella chiangraina
MFLUCC 10-0556
KJ474828
KJ474840
KJ474849
KJ474857
Roussoella doimaesalongensis
MFLUCC 14-0584
KY026584
KY000659
KY651249
KY678394
Roussoella elaeicola
MFLUCC 15-0276a
MH742329
MH742326
-
-
Roussoella elaeicola
MFLUCC 15-0276b
MH742330
MH742327
-
-
Roussoella guttulata
MFLUCC 20-0102
NR_172428
NG_075383
MW022188
MW022187
Roussoella hysterioides
CBS 546.94
KF443405
KF443381
KF443399
KF443392
Roussoella intermedia
NBRC 106245
KJ474831
AB524624
-
-
Roussoella intermedia
CBS 170.96
KF443407
KF443382
KF443398
KF443394
Roussoella japanensis
MAFF 239636
KJ474829
AB524621
AB539114
AB539101
Roussoella japanensis ★
GMBCC1067
OM891802
OM884018
ON098344
ON098381
Roussoella japanensis ★
GMBCC1117
OM891811
OM884023
ON098345
ON098382
Roussoella kunmingensis
KUMCC 18-0128
MH453491
MH453487
MH453480
MH453484
Roussoella kunmingensis ★
GMBCC1055
OM891797
OM884013
ON098353
ON098385
Roussoella kunmingensis ★
GMBCC1057
OM891798
OM884014
ON098354
ON098362
Roussoella kunmingensis ★
GMBCC1086
OM891804
OM801287
ON098355
ON098363
Roussoella magnatum
MFLUCC 15-0185
-
KT281980
-
-
Roussoella margidorensis
MUT 5329
KU314944
MN556322
MN605897
MN605917
Roussoella mediterranea
MUT 5369
KU314947
MN556324
MN605899
MN605919
Roussoella mexicana
CPC 25355
KT950848
KT950862
-
-
Roussoella multiloculate ★
GMB1219
OM891801
OM884017
ON098341
ON098366
Roussoella multiloculate★
GMBCC1056
OM891799
OM884015
ON098343
ON098369
Roussoella multiloculate ★
GMBCC1065
OM891800
OM884016
ON098338
ON098364
Roussoella multiloculate ★
GMBCC1069
OM891803
OM884019
ON098340
ON098365
Roussoella multiloculate ★
GMBCC1071
ON159383
OM755586
ON098342
ON098368
Roussoella multiloculate ★
GMBCC1080
ON159384
OM755589
ON098339
ON098367
Roussoella neopustulans
MFLUCC 11-0609
KJ474833
KJ474841
KJ474850
-
Roussoella neopustulans
MFLUCC 12-0003
KU940130
KU863119
-
-
Roussoella nitidula
MFLUCC 11-0182
KJ474835
KJ474843
KJ474852
KJ474859
Roussoella nitidula
MFLUCC 11-0634
KJ474834
KJ474842
KJ474851
KJ474858
Roussoella nitidula ★
GMBCC1097
OM891805
OM884020
ON098351
ON098384
Roussoella padinae
MUT 5503
KU158170
MN556327
MN605902
MN605922
Roussoella padinae ★
GMBCC1126
OM891816
OM884025
ON098356
ON098383
Roussoella papillate★
GMBCC1121
OM891814
OM755608
ON098346
ON098378
Roussoella papillate ★
IFRDCC 3103
ON228188
ON228184
ON244452
ON244450
Roussoella pseudohysterioides
MFLUCC 13-0852
KU940131
KU863120
KU940198
-
Roussoella pseudohysterioides
KUMCC 18-0111
MH453490
MH453486
MH453479
MH453483
Roussoella pustulans
MAFF 239637
KJ474830
AB524623
AB539116
AB539103
Roussoella scabrispora
MFLUCC 11-0624
KJ474836
KJ474844
KJ474853
KJ474860
Roussoella scabrispora
MFLUCC 14-0582
KY026583
KY000660
-
-
Roussoella scabrispora ★
GMBCC1101
ON159385
OM755615
ON098347
ON098371
Roussoella scabrispora ★
GMBCC1102
OM891806
OM884021
ON098348
ON098370
Roussoella scabrispora ★
GMBCC1104
OM891807
OM755616
ON098349
ON098373
Roussoella scabrispora ★
GMBCC1108
OM891808
OM755614
ON098350
ON098372
Roussoella siamensis
MFLUCC 11-0149
KJ474837
KJ474845
KJ474854
KJ474861
Roussoella sinensis★
GMBCC1119
OM891813
OM884024
ON098357
ON098379
Roussoella sinensis ★
IFRDCC 3101
ON228187
ON228183
ON244453
ON244451
Roussoella thailandica
MFLUCC 11-0621
KJ474838
KJ474846
-
-
Roussoella tuberculata
MFLUCC 13-0854
KU940132
KU863121
KU940199
-
Roussoella tuberculata ★
GMBCC1123
OM891815
OM755613
ON098352
ON098380
Roussoella uniloculata★
GMBCC1110
OM891809
OM801286
ON098360
ON098374
Roussoella uniloculata ★
DDQ01005-2
OM891817
OM884026
ON098361
ON098375
Roussoella verrucispora
CBS 125434
KJ474832
AB524622
AB539115
AB539102
Roussoella yunnanensis
KUMCC 18-0115
MH453492
MH453488
MH453481
-
Roussoellopsis macrospora
MFLUCC 12-0005
-
KJ474847
KJ474855
KJ474862
Roussoellopsis sp.
NBRC 106246
-
AB524626
-
-
Roussoellopsis tosaensis
KT 1659
-
AB524625
MG829199
AB539104
Setoarthopyrenia chromolaenae
MFLUCC 17-1444
MT214344
MT214438
MT235768
MT235805
Thyridaria acaciae
CBS 138873
KP004469
KP004497
-
-
Thyridaria broussonetiae
CBS 141481
NR_147658
KX650568
KX650539
KX650586
Torula herbarum
CBS 111855
KF443409
KF443386
KF443403
KF443396
Torula hollandica
CBS 220.69
KF443406
KF443384
KF443401
KF443393
Xenoroussoella triseptata
MFLUCC 17-1438
MT214343
MT214437
MT235767
MT235804
Abbreviations: CBS: Culture collection of the Westerdijk Fungal Biodiversity Institute, Utrecht, Netherlands; CPC: Culture collection of Pedro Crous, Netherlands; IFRDCC: Research Institute of Resource Insects, Chinese Academy of Forestry Culture Collection, Kunming, China; GMB: Herbarium of Guizhou Medical University, Guiyang, China; GMBCC: Guizhou Medical University Culture Collection, Guiyang, China; KUMCC: Kunming Institute of Botany Culture Collection, Kunming, China; MAFF: Ministry of Agriculture, Forestry and Fisheries, Japan; MFLUCC: Mae Fah Luang University Culture Collection, Chiang Rai, Thailand; MUT: Mycotheca Universitatis Taurinensis, Department of Life Sciences and Systems Biology, University of Turin, Turin, Italy; NBRC: Biological Resource Center, National Institute of Technology and Evaluation, Chiba, Japan; UTHSC: The University of Tennessee Health Science Center, Memphis, USA; DDQ: Dong-Qin Dai; KT: K. Tanaka.
2.3. Phylogenetic Analyses
The quality of the sequences was verified (BioEdit v.7.0 [25]), and alignments from single genes were generated (MAFFT v.7.215 [26]) (http://mafft.cbrc.jp/alignment/server/index.html, accessed on 20 April 2021), being manually edited when needed (MEGA6 version 6.0 [27,28]). The combined alignment of multi-genes was carried out (MEGA6 [27]). Maximum-likelihood (ML) analyses were performed (software RAxMLGUI v.1.0 [29,30]) with a 1000 bootstrap. Multi-gene alignments were uploaded to the website (http://sing.ei.uvigo.es/ALTER/, accessed on 20 April 2022) to obtain the PHYLIP format file. The best nucleotide substitution model was determined using the online tool Findmodel (http://www.hiv.lanl.gov/content/sequence/findmodel/findmodel.html, accessed on 20 April 2022) and was executed in RAxMLGUI to generate the best ML.Bayesian analyses were performed using MrBayes v.3.0b4 [31]. MrModeltest v.2.2 selected the best evolution model [32]. Posterior probabilities (PP) [33,34] were performed by Markov Chain Monte Carlo sampling (MCMC) [35]. Six simultaneous Markov chains were run for 1,000,000 generations, and trees were sampled every 100th generation. The burn-in was set to 0.25, and the run was automatically stopped when the average standard deviation of split frequencies reached below 0.01 [36].Trees were constructed (TreeView [37]) and formatted (Adobe Illustrator CS v.5). Maximum-likelihood bootstrap values (MLBP) equal to or greater than 50% and Bayesian posterior probabilities (BYPP) > 0.80 are given at the branches. The sequences used in this study are listed in Table 1. The alignment based on the combined loci and phylogenetic tree was submitted to TreeBASE under the code 29601 (https://www.treebase.org/, accessed on 20 April 2022).
3. Results
3.1. Phylogenetic Analyses
The sequence data set of combined ITS, LSU, tef1, and rpb2 loci was used to determine the phylogenetic position of the newly generated described strains. SSU sequences were not included in the alignment, as most Roussoella taxa lack SSU in the GenBank. The dataset comprised 90 strains, including two outgroup strains (Torula herbarum CBS 220.69 and CBS 111855, Table 3). The final alignment comprises 3381 characters used for the phylogenetic analyses, including gaps. The RAxML analysis of the combined dataset generated a best-scoring tree with a final ML optimization likelihood value of −30,685.326261 (Table 4). GTR+I+G model was selected as the best model based on MrModeltest and was used for the Bayesian analysis.
Table 4
Different parameters for ML analyses.
Analyses
Parameters
Value
ML
Final ML Optimization Likelihood
−30,685.326261
No of characters
3372
Alignment patterns
1513
Proportion of Undetermined characters or gaps
29.97%
Substitution model
GTR
Tree length
3.629102
Estimated base frequencies
A = 0.240311
C = 0.267630
G = 0.270582
T = 0.221477
Substitution rates
AC = 1.886299
AG = 5.163488
AT = 1.984078
CG = 1.308792
CT = 9.477974
GT = 1.000000
Gamma distribution shape parameter
α = 0.180205
Based on the multi-gene phylogenetic analyses (Figure 1), 26 new isolates were grouped in the family Roussoellaceae (96% MLBP, 1.00 BYPP). Five isolates, GMBCC1056, GMBCC1065, GMBCC1069, GMBCC1071, and GMBCC1080, and one specimen, GMB1219, represented a novel species Roussoella multiloculate sp. nov. and formed a sister clade to R. verrucispora with high statistical support (100% MLBP, 1.00 BYPP). Roussoella papillate sp. nov. (GMBCC 1121 and IFRDCC 3103) grouped sister with R. japanensis and R. hysterioides with high bootstrap support (100% MLBP, 1.00 BYPP). The third new species, R. sinensis sp. nov., clustered together with R. doimaesalongensis, R. siamensis, and R. yunnanensis. The last new taxon, R. uniloculata, forms a distinct clade at the base of lineage, which contains R. angusta, R. chiangraina, R. kunmingensis, R. magnatum, R. mediterranea, R. neopustulans, and R. padinae. The R. sinensis and R. uniloculata clades are phylogenetically distant from the known species (Figure 1).
Figure 1
Phylogenetic tree from the best scoring of the RAxML analysis based on combined ITS, LSU, rpb2 and tef1 loci is rooted to Torula herbarum (CBS 111855) and T. hollandica (CBS 220.69). Bootstrap values for maximum likelihood (MLBP) and Bayesian posterior probabilities (BYPP) equal to or greater than 50% and 0.80, respectively, are given at the branches. The newly generated sequences are marked with asterisk “★” and ex-type strains are indicated in bold. Bar = 0.1 expected number of nucleotide substitutions per site per branch.
3.2. Taxonomy
Phook., Liu and Hyde, Phytotaxa 181(1):23 (2014) Figure 2.
Figure 2
Neoroussoella bambusae (GMB1291, new country record). (a) Bamboo specimen; (b) Black ascostromata on host surface; (c) Vertical section of ascostroma; (d) Cells of locules walls; (e) Pseudoparaphyses; (f–i) Asci; (j–m) Ascospores; (n) Ascospore in India ink; (o) Germinating ascospore; (p,q) Cultures on PDA from above and below. Scale bars: (b) = 150 μm, (c) = 100 μm, (d) = 50 μm, (e,n) = 10 μm, (f–i) = 20 μm, (j–m) = 5 μm, (o) = 15 μm.
Index Fungorum number: IF 550669.For descriptions of sexual and asexual morphs see Liu et al. [1].Distributions: Thailand, China.Material examined: China, Yunnan Province, Mengla, Jinghong, Xishuangbanna Topic Botany Garden, Bamboo Garden, (101°24′41.74″ N, 21°93′40.94″ E, 507.88 m), on dead culms of bamboo, 15 August 2020, Dong-Qin Dai, DDQ01025 (GMB1291); living culture, GMBCC1116, GenBank accession number SSU: OM891830; Ibid. DDQ01044 (GMB1295); living culture, GMBCC1118 (new country record), GenBank accession number SSU: OM891832.Notes: In morphology, GMB1291 and GMB1295 are similar to each other and resemble N. bambusae. Furthermore, LSU, ITS, and rpb2 gene regions of GMBCC1116 and GMBCC1118 are identical to each other. Therefore, new collections GMBCC1116 and GMBCC1118 are identified as N. bambusae. Our new strains (GMBCC1116 and GMBCC1118) grouped in a clade comprising N. alishanense (FU31016, ex-type), N. bambusae (MFLUCC 11-0124, ex-type) and R. arundinacea (CBS 146088) with high statistical support (100% MLBP, 1.00 BYPP) (Figure 1). Neoroussoella bambusae differs from N. alishanense in having ascostromata that are visible as black dome-shaped or shield-shaped or flattened ovoid areas on the host surface while N. alishanense is saprobic on Pennisetum purpureum and having hemispherical to subconical ascomata and ascospores which lack mucilaginous sheath around the ascospores [18]. This is the first report of this species from China.Kaz. Tanaka, Liu and Hyde, Phytotaxa 181(1):14 (2014) Figure 3.
Figure 3
Roussoella japanensis (GMB1292, new country record). (a) Bamboo specimen; (b) black ascostromata on host surface; (c) vertical section of ascoma; (d) cells between locules; (e) pseudoparaphyses; (f–j) ascospores; (k) ascospore in India ink; (l) germinating ascospore; (m) cultures on PDA from below and above; (n–s) asci. Scale bars: (b) = 2 mm, (c) = 200 μm, (d) = 50 μm, (e–j) = 10 μm, (k,l) = 20 μm, (n–s) = 30 μm.
Index Fungorum number: IF 550663.For descriptions of sexual and asexual morphs see Liu et al. [1].Distributions: Japan, China.Material examined: China, Yunnan Province, Kunming Expo Park, on dead culms of bamboo, 24 July 2020, Dong-Qin Dai, DDQ00780 (GMB1220), living culture, GMBCC1067 (new country record), GenBank accession number SSU: OM891823; Luoping, Jiulong waterfall, on dead culms of bamboo, 29 August 2020, Dong-Qin Dai, DDQ01029 (GMB1292), living culture, GMBCC1117, GenBank accession number SSU: OM891831.Notes: Our phylogenetic analyses showed that new strains GMBCC1067 and GMBCC1117 clustered together with R. japanensis (MAFF 239636, ex-type) with strong statistical supports (100% MLBS, 1.00 BYPP) (Figure 1). Furthermore, there are no base pair differences in ITS, tef1 and rpb2 loci of GMBCC1067, GMBCC1117, and MAFF 239636 which indicates that they are conspecific. Morphologically, they are identical to each other [1]. Hence, based on both morphology and phylogeny, we identified GMBCC1067 and GMBCC1117 as R. japanensis. Roussoella japanensis was introduced by Liu et al. [1] from twigs of Sasa veitchii var. veitchii in Japan. This is the first record of R. japanensis from China.H.B. Jiang, Phookamsak and Hyde, Mycol. Prog. 18(4):581 (2019) Figure 4.
Figure 4
Roussoella kunmingensis (GMB1203, sexual morph, (a,c,e,g,h–q); GMB1259, first report of asexual morph, (b,d,f,r–y)). (a,b) Bamboo specimens; (c) black ascostromata on host surface; (d) black conidiomata on host surface; (e) vertical section of ascostromata; (f) vertical section of conidioma; (g) pseudoparaphyses; (h–k) asci; (l–n) ascospores; (o,p) ascospores in India ink; (q) germinating ascospore; (r–u) conidiogenous cells contacting with conidia; (v,w) conidia; (x) germinating conidium; (y) cultures on PDA from above and below. Scale bars: (c) = 500 μm, (d) = 300 μm, (e) = 200 μm, (f) = 100 μm, (g–x) = 10 μm.
Index Fungorum number: IF 827562.Saprobic on decaying bamboo culms. Sexual morph: see Jiang et al. (2019). Asexual morph: Stromata forming under a light brown area, up to 250–300 µm long and 75–105 µm wide, and becoming raised at maturity, globose, ellipsoidal to irregular. Conidiomata 55–75 µm high, 200–300 µm diam., locules solitary immersed in the stromata, globose to subglobose, dark brown. Conidiomatal wall comprising two layers of cells of textura angularis, with dark to brown outer thin layer 6–8 µm thick, with a 12–21 µm thick, hyaline, conidiogenous inner layer. Conidiophores reduced to conidiogenous cells. Conidiogenous cells 3.5–6.5 × 3–5 µm ( = 4.7 × 3.9 µm, n = 5) enteroblastic, phialidic, indeterminate, discrete, ampulliform, hyaline, smooth-walled. Conidia 4–5 × 2.5–3.5 µm ( = 4.3 × 2.9 µm, n = 20), ellipsoidal, oblong, aseptate, straight, rounded at both ends, hyaline when immature, and becoming brown to dark brown when mature, smooth-walled, inside usually containing 1–2 small guttules.Culture characters: Ascospores and conidia germinating on PDA within 24 h and germ tubes produced from both cells and both sides. Colonies slow-growing, 15 mm diam. after 20 days at 28 °C, under 24 h dark, circular, floccose at the centre, with even margin, white at margin, and light yellow at the centre.Distributions: China.Material examined: China, Yunnan Province, Kunming, Kunming Expo Park (25°07′77″ N, 102°76′23″ E, 1960 m), on dead culms of bamboo, 24 July 2020, Dong-Qin Dai, DDQ00742, GMB1203, living culture, GMBCC1055; Ibid., DDQ00745 (GMB1206), living culture GMBCC1057, GenBank accession number SSU: OM891820; Diqin, Shangri-La, Bigu Mountain, on dead culms of bamboo, 22 July 2020, 27°36′56.9″ N, 99°42′6.4″ E, 3460 m, Dong-Qin Dai, DDQ00905, GMB1259; living culture, GMBCC1086 (first report of the asexual morph), GenBank accession number SSU: OM891825.Notes: Roussoella kunmingensis is characterized by having immersed, uniloculate ascomata, cylindrical to cylindric-clavate, bitunicate asci, and ellipsoidal to fusiform, light brown to brown, 2-celled ascospores with longitudinal ribs. Multi-gene phylogenetic analyses showed that GMBCC1055, GMBCC1057, and GMBCC1086 grouped with R. kunmingensis (KUMCC 18-0128, ex-type) with high statistic values (100% MLBP, 1.00 BYPP). Base pair arrangement of ITS, tef1, and rpb2 regions of strains GMBCC1055, GMBCC1057, and GMBCC1086 and KUMCC 18-0128 were identical. However, Jiang et al. [5] described this species with only sexual morph from bamboo in China. Here, one new collection with sexual morph and two new collections with asexual morph were examined. Hence, we reported the asexual morph of R. kunmingensis for the first time and provide a description of the asexual morph and an illustration of the holomorph.Dai and Wijayaw., sp. nov. Figure 5.
Figure 5
Roussoella multiloculate (GMB1207, holotype). (a) Bamboo specimen; (b–d) black conidiomata on host surface; (e,f) vertical sections of conidiomata; (g–i) conidia attached to conidiogenous cells; (j,k) conidia. (l) germinating conidium. (m) cultures on PDA from above and below. Scale bars: (b–d) = 500 µm, (e,f) = 100 µm, (g–l) = 5 µm.
Index Fungorum number: IF 556005.Etymology: Reference to its multi-loculate conidiomata.Holotype: GMB1207.Saprobic on dead bamboo branches. Sexual morph: Undetermined. Asexual morph: Stromata forming under a blackened area, up to 0.7–1.5 mm long and 0.3–0.5 mm wide, and becoming raised at maturity, ellipsoidal to oblong, occasionally irregular. Conidiomata 30–110 µm wide, 50–1000 µm long, loculate, 3–10 locules gregarious immersed in the stromata, globose to subglobose, dark brown, with slit-like opening. Conidiomatal wall comprising several layers of cells of textura angularis, with dark to brown outer thin layer, 5–7 µm thick, with 10–15 µm thick, hyaline, conidiogenous inner layer. Conidiophores reduced to conidiogenous cells. Conidiogenous cells 2.5–10 × 2–5 µm ( = 8.7 × 3.1 µm, n = 20) enteroblastic, phialidic, indeterminate, discrete, cylindrical to ampulliform, hyaline, smooth-walled. Conidia 4–5.5 × 2.5–3.7 µm ( = 5.1 × 3.1 µm, n = 20), ellipsoidal oblong, aseptate, straight, rounded at both ends, hyaline when immature and becoming brown to dark brown when mature, smooth-walled, inside usually containing 2 small guttules.Culture characters: Conidia germinating on PDA within 24 h and germ tubes produced from one side. Colonies slow growing, 40 mm diam. after 20 days at 28 °C, under 24 h dark, circular, with even margin, floccose at the center, greenish brown, and white at margin, ring-like from below.Distributions: China.Material examined: China, Yunnan Province, Kunming, Kunming Expo Park (25°07′77″ N, 102°76′23″ E, 1960 m), on dead culms of bamboo, 24 July 2020, Dong-Qin Dai, DDQ00748 (GMB1207, holotype), ex-type GMBCC1056, GenBank accession number SSU: OM891821; Ibid. (IFRD500-21 isotype), ex-isotype IFRDCC 3100; Ibid. DDQ00774 (GMB1218), living culture, GMBCC1065, GenBank accession number SSU: ON124715; Ibid. DDQ00775 (GMB1219), GenBank accession number SSU: OM891822; Ibid. DDQ00783(GMB1221), living culture, GMBCC1069, GenBank accession number SSU: ON124716; Ibid. DDQ00792 (GMB1223), living culture, GMBCC1071, GenBank accession number SSU: ON124717; Ibid. DDQ00859 (GMB1248), living culture, GMBCC1080, GenBank accession number SSU: OM891824.Notes: Newly generated strains, GMBCC1056, GMBCC1065, GMBCC1069, GMBCC1071 and GMBCC1080, and specimen GMB1219 grouped together as the sister clade to R. verrucispora (CBS 125434, ex-type) with high statistical supports (100% MLBP, 1.00 BYPP) (Figure 1). A comparison of nucleotide base pairs of ITS, tef1 and rpb2, shows that R. multiloculate differs from R. verrucispora. Considering ITS, tef1 and rpb2 loci, R. multiloculate differs from R. verrucispora in 24/520 (4.6%), 27/1045 (2.6%), and 20/924 bp (2%), respectively. However, the asexual morph of R. verrucispora is undetermined yet for the morphological comparison [1]. Roussoella multiloculate shares similar morphological features to R. chiangraina, R. neopustulans, R. pustulans, and R. siamensis [1], but phylogenetic reconstructions strongly supported that these species are phylogenetically distinct (Figure 1). Therefore, based on the phylogenetic analyses and guidelines provided by Jeewon and Hyde [38] for the delimitation of new species, we introduce R. multiloculate as a novel species of Roussoella.Sacc. and Paol., Atti Inst. Veneto Sci. lett., ed Arti, Sér. 6 6:410 (1888) Figure 6.
Figure 6
Roussoella nitidula (GMB1270, new country record). (a) Bamboo specimen; (b) black ascostromata on host surface; (c) vertical sections of ascomata; (d) cells of locule wall. (e) pseudoparaphyses; (f–j) asci; (k–n) ascospores; (o) Germinating ascospore; (p) Cultures on PDA from above and below. Scale bars: (b) = 1 mm, (c) = 500 μm, (d) = 50 μm, (e–j) = 30 μm, (k–n) = 10 μm, (o) = 15 μm.
Index Fungorum number: IF 177454.Descriptions of sexual and asexual morphs see Liu et al. [1].Distributions: China, Malaysia, Thailand.Material examined: China, Yunnan Province, Dehong, Ruili, Yinlong Village (97°55′40.6″ N, 24°15′49.3″ E, 912 m), on dead culms of bamboo, 16 August 2020, Dong-Qin Dai, DDQ00957 (GMB1270); living culture, GMBCC1097 (new country record), GenBank accession number SSU: OM891826.Notes: In our phylogenetic analyses, the new strain GMBCC1097 grouped with two strains of R. nitidula (MFLUCC 11-0182, ex-type) and MFLUCC 11-0634) (Figure 1) with high statistical supports (100% MLBS, 1.00 BYPP). Furthermore, GMBCC1097 morphologically resembles R. nitidula, having black dome-shaped ascostromata; hypha-like, septate, numerous, narrow pseudoparaphyses; cylindrical, relatively thin-walled asci and two-celled dark brown ornamented ascospores [1]. Our fresh collections are morphologically similar to the type of R. nitidula and have approximate sizes of asci and ascospore (asci 90–130 × 8–11 μm vs. 110–150 × 8–10(–11) μm; ascospores 14.5–17 × 5–6.5 μm vs. 16–18 × 6–7 μm). Therefore, we consider them to represent one species based on phylogeny and morphology. We herein report R. nitidula from China for the first time.Dai and Wijayaw. sp. nov. Figure 7.
Figure 7
Roussoella papillate (GMB129, holotype). (a) Bamboo specimen; (b) black ascostromata on host surface; (c) vertical section of ascoma; (d) cells of locule wall near the ostiole; (e) branching pseudoparaphyses; (f–i) asci; (j–m) ascospores; (n) germinating ascospore; (o,p) cultures on PDA from above and below. Scale bars: (b) = 500 µm, (c) = 150 µm, (d) = 50 µm, (e–i,n) = 30 µm, (j–m) = 15 µm.
Index Fungorum number: IF 556010.Etymology: References to its papilate ascostromata.Holptype: GMB1298.Saprobic on decaying bamboo culms. Sexual morph: Ascostromata 250–350 μm high, 500–900 μm long, 500–700 μm wide, deeply immersed under a brown area, becoming slightly raised at maturity, ellipsoidal to irregular coriaceous, solitary to gregarious, elliptical, with a prominent, black papillate, uniloculate. Locules 200–300 μm high, 450–500 μm diam., solitary, subglobose, brown to dark brown, with a central ostiole. Wall of locules 9–20 μm wide, composed of 1–2 layers of textura angularis, thin-walled flattened at the base, light brown to brown. Hamathecium comprises 1–2 μm wide, numerous, anastomosing cellular pseudo paraphyses, branching at the apex, smooth-walled, often constrict at the septum, and embedded in a gelatinous matrix. Asci 108–125 × 7–10 μm ( = 114.1 × 8.3 μm, n = 20), 8-spored, bitunicate, cylindrical, short pedicellate, apically rounded with an ocular chamber (0.5–0.8 μm). Ascospores 15–17 × 5.5–7 μm ( = 16.4 × 6.2 μm, n = 20), uniseriate, ellipsoidal to broad fusiform, 2-celled, constricted at the septum, brown to dark brown, with longitudinal striations and surrounded by a mucilaginous sheath. Asexual morph: Undetermined.Culture characters: Ascospores germinating on PDA within 24 h and germ tubes produced from one cell. Colonies slow-growing, 20 mm diam. after 20 days at 28 °C, under 24 h dark, rounded, with even margin, white, cottony from above, and white at the margin, yellowish-brown at the center, ring-like from below.Distributions: China.Material examined: China, Yunnan Province, Luoping, Jiulong fall waterfall, on dead culms of bamboo, 29 August 2020, Dong-Qin Dai, DDQ01076 (GMB1298, holotype); ex-type GMBCC1121; Ibid. (IFRD500-24 isotype), ex-isotype living culture IFRDCC 3103, GenBank accession number SSU: ON228186.Notes: Roussoella papillate (GMBCC1121) formed a well distinct lineage (100% MLBP, 1.00 BYPP) basal to R. hysterioides (CBS 546.94) and R. japanensis (MAFF 239636, ex-type, GMBCC1067, and GMBCC1117) (Figure 1). Base pair differences in the tef1 gene region of R. papillate to R. hysterioides and R. japanensis are 4/841 (0.5%) and 18/923 bp (2%), respectively, while base pair differences of ITS locus of these three species are very less. Morphological differences between R. papillate and related species are listed in Table 5. Therefore, depending on morphological differences and slight base pair differences in tef1 region, we introduce this species as a new member of Roussoella.
Table 5
Morphological comparison of R. papillate with R. hysterioides and R. japanensis.
Characters
R. japanensis [1]
R. papillate(in This Study)
R. hysterioides [39]
Ascostromata
500–2000 μm diam., immersed under a clypeus, raised, visible, black, dome-shape areas on host surface, uni-biloculate
250–350 μm high, 500–900 μm long, 500–700 μm wide deeply immersed under a brown area, becoming raised at maturity, ellipsoidal to irregular coriaceous, solitary to gregarious, brown, with black papilla, uniloculate
230–280 µm high, 2–2.5 mm wide, immersed, flattened at the base, multilocular
Locules
190–210 μm high, 500–560 μm diam., depressed globose with a flattened base, single or 2–3 grouped, ostiolate
200–300 μm high, 450–500 μm diam., solitary, subglobose, brown to dark brown, with a central ostiole
75–150 × 35–50 µm, with the ostiole erumpent through the host epidermis
Peridium (Wall of locules)
10–15 μm thick at sides, composed of 3–5 layers of polygonal flattened cells (3.5–12.5 × 1.5–2.5 μm), surrounded by wedge-shaped stromatic region (450–800 μm wide at sides) composed of rectangular to polygonal cells (3.5–15 × 4–10 μm)
9–20 μm wide, composed of 1–2 layers of textura angularis, thin-walled flattened at the base, light brown to brown
Asci
107–132 × 8–9.5 μm, cylindrical, short pedicellate
108–125 × 7–10 μm, cylindrical, short pedicellate
105–120 × 4–6 µm, cylindrical, short- pedicellate
Ascospores
16–22 × 5.5–7 μm, uniseriate, fusiform to ellipsoidal, with a median septum, 2-celled, brown, rough-walled more or less, covered with longitudinal striations and surrounded by an entire sheath of 0.5–4 μm wide
15–17 × 5.5–7 μm, uniseriate, ellipsoidal to broad fusiform, 2-celled, constricted at the septum, brown to dark brown, with longitudinal striations, surrounded by a mucilaginous sheath
13–20 × 4–6 µm, uniseriate, overlapping, fusiform, uniseptate, constricted at the septum, brown, slightly pointed at the ends, upper cell larger, with striate ornamentation on surface
Roussoella padinae (GMB1320, first report of asexual morph, first record from terrestrial habitat and first record from China). (a) Bamboo specimen; (b) reddish-brown conidiomata on host surface; (c) vertical sections of conidiomata; (d) conidioma wall; (e–h) conidiogenous cells; (i) conidia; (j) germinating conidium; (k) cultures on PDA from above and below. Scale bars: (b) = 1 mm, (c) = 150 µm, (d) = 30 µm, (e–h) =15 µm, (i) = 5 µm, (j) = 10 µm.
Index Fungorum number: IF 832843.Saprobic on dead bamboo culms. Sexual morph: Undetermined. Asexual morph: Stromata forming under a light red area, up to 1–1.5 mm diam. and 100–200 µm high, and becoming raised when mature, ellipsoidal to globose. Conidiomata 85–175 µm high, 200–980 µm diam., loculate, 2–5 locules gregarious immersed in the stromata, fabiform, dark brown. Conidiomatal wall comprising two layers of cells of textura angularis, with dark to brown outer thin layer 3 µm thick, with 6.3–7.5 µm thick, hyaline, conidiogenous inner layer. Conidiophores were reduced to conidiogenous cells. Conidiogenous cells 1.5–4.5 × 1–2.5 µm ( = 2.7 × 1.6 µm, n = 20) enteroblastic, indeterminate, discrete, cylindrical to ampulliform, hyaline, smooth-walled. Conidia 3–4 × 2–3 µm ( = 3.3 ×2.4 µm, n = 20), ellipsoidal to globose, aseptate, straight, rounded at both ends, hyaline when young, and becoming brown at maturity, smooth-walled, inside usually containing one small guttule.Culture characters: Conidia germinating on PDA within 24 h and germ tubes produced from one side. Colonies slow-growing, 40 mm diam. after 20 days at 28 °C, under 24 h dark, circular, with radialized margin, floccose at the center, brown from above and dark brown from below.Distributions: China, Italy.Material examined: China, Yunnan Province, Jinghong Menla, Manzhang (21°91′97.56″ N, 101°20′42.49″ E, 617.14 m), on dead culms of bamboo, 16 July 2020, Dong-Qin Dai, DDQ02019, GMB1320; living culture, GMBCC1126.Notes: Phylogenetic analyses showed that the new strain GMBCC1126 grouped with R. padinae (MUT 5503, ex-type) which was introduced by Poli et al. [8] from brown alga Padina pavonica (i.e., from marine habitat). Base pair arrangement of ITS, LSU, and rpb2 loci are identical in strain GMBCC1126 and R. padinae. Therefore, GMB1320 (strain: GMBCC1126) and R. padinae are conspecific. However, sexual and asexual morphs of R. padinae are undetermined while Poli et al. [8] have described this species based only on the morphology of colonies and vegetative structures. In this study, we report the asexual morph of R. padinae for the first time from dead culms of bamboo. Further, this is the first record of this species from terrestrial habitats and the first record from China.(Höhn.) Aptroot, Nova Hedwigia 60(3-4):368 (1995) Figure 9.
Figure 9
Roussoella scabrispora (GMB1286, new country record). (a) Bamboo specimen; (b) ascomata on bamboo host; (c) vertical section of ascoma; (d) peridium; (e) pseudoparaphyses; (f–i) ascospores; (j) germinating ascospore; (k–n) asci; (o,p) cultures on PDA from above and below. Scale bars: (b) = 1 mm, (c) = 500 μm, (d) = 100 μm, (e) = 30 μm, (f–j) = 15 μm, (k–n) = 50 μm.
Index Fungorum number: IF 414110.Description of sexual morph see Liu et al. [1], Asexual morph: Undetermined.Distributions: China, Indonesia, Thailand.Material examined: China, Yunnan Province, Ruili, Dehong Yinlong Village (97°55′40.6″ N, 24°15′49.3″ E, 912 m), on dead culms of bamboo, 16 August 2020, Dong-Qin Dai, DDQ00960 (GMB1274); living culture, GMBCC1101, GenBank accession number SSU: OM891827; Ibid. DDQ00961 (GMB1275), GenBank accession number SSU: ON124718; living culture, GMBCC1102; Ibid. DDQ01003 (GMB1286); living culture, GMBCC1108, GenBank accession number SSU: ON124719; Bamboo Garden, Xishuangbanna Topic Botany Garden, Mengla, Jinghong, Yunnan, China (101°24′41.74″ N, 21°93′40.94″ E, 507.88 m), on dead culms of bamboo, 15 August 2020, Dong-Qin Dai, DDQ00975 (GMB1279); living culture, GMBCC1104 (new country record), GenBank accession number SSU: OM891828.Notes: Roussoella scabrispora comprises distinctive ascospores with reticulate wall ornamentation [1]. However, the ascospores of our new collection are slightly narrower (27–34 × 7–9.5 μm vs. (24−)25–29(−32) × (7−)9–10.5 μm) than in the protologue [39]. Nevertheless, based on phylogenetic analyses (Figure 1), we confirmed new collections (i.e., GMB1274, GMB1286 and GMB1279) are R. scabrispora. This is the first report of R. scabrispora from China.Dai and Wijayaw. sp. nov. Figure 10.
Figure 10
Roussoella sinensis (GMB1296, holotype). (a) Bamboo specimen; (b) black ascostromata showing black ostioles with openings on host surface; (c,d) vertical section of ascostromata; (e) cells of locule wall; (f) pseudoparaphyses; (g–j) ascospores; (k) germinating ascospore; (l–o) different developmental stages of asci; (p,q) cultures on PDA from above and below. Scale bars: (c,d) = 200 μm, (e) = 50 μm, (f) = 10 μm, (g–k) = 15 μm, (l–o) = 30 μm.
Index Fungorum number: IF 556014.Etymology: Reference to its first collection site China.Holotype: GMB1296.Saprobic on decaying bamboo culms. Sexual morph: Ascostromata 400–600 μm diam., forming under raised, visible, dark brown to black, globose areas near ostioles opening 100–200 diam. on host surface, deeply immersed, scattered to gregarious, uniloculate. Locules 160–200 μm high, 250–400 μm diam., subglobose, dark brown, with a short central ostiolate neck, 55–65 μm high, 40–45 μm diam. Wall of locules 10–20 μm thick, comprising host and fungal tissues, thin, 8–13 μm wide, composed of dark brown cells of textura angularis. Hamathecium comprises 1–2 μm wide, numerous, anastomosing branched pseudoparaphyses, rough-walled, and embedded in a gelatinous matrix. Asci 130–170 μm × 9–10.5 μm ( = 148.9 × 9.6 μm, n = 20), 8-spored, bitunicate, cylindrical, with a short knob-like pedicel, with an ocular apical chamber. Ascospores 16.5–20.5 × 6–7.5μm ( = 18.2 × 6.8 μm, n = 20), uniseriate, overlapping, ellipsoid to broad fusiform, 2-celled, upper cells bigger, occasionally curve, brown, constricted at the septum, narrowly at both ends, with longitudinal striations and surrounded by a mucilaginous sheath. Asexual morph: Undetermined.Culture characters: Ascospores germinating on PDA within 24 h and germ tubes produced from upper cell. Colonies rapidly growing, 20 mm diam. after 20 days at 28 °C, under 24 h dark, ellipsoidal to rounded, with even, thallus-like margin, pale yellow, floccus at the margin, milk-white at the center and becoming light brown.Distributions: China.Material examined: China, Yunnan Province, Jinghong, Mengla, Bamboo Garden, Xishuangbanna Topic Botany Garden (101°24′41.74″ N, 21°93′40.94″ E, 507.88 m), on dead culms of bamboo, 15 August 2020, Dong-Qin Dai, DDQ01045 (GMB1296, holotype); ex-type GMBCC1119, GenBank accession number SSU: OM891833; Ibid. (IFRD500-22, isotype), ex-isotype IFRDCC 3101, GenBank accession number SSU: ON228185.Notes: Roussoella sinensis (GMB1296, holotype) shows the typical morphological characters of the sexual morphs of Roussoella species [1,17], and is distinct by having locules with a short central ostiolate neck (Figure 10c), 55–65 μm high, 40–45 μm diam. Furthermore, Roussoella sinensis grouped as the sister species to R. doimaesalongensis (MFLUCC 14-0584, ex-type). ITS, tef1 and rpb2 base pair differences of R. sinensis (GMBCC1119) and R. doimaesalongensis are 10% (53/530), 21.30% (171/803), and 9.6% (70/728), respectively. Roussoella
siamensis (MFLUCC 11-0149, ex-type) and R.
yunnanensis (MFLUCC 18-0115, ex-type) as a separate lineage but with relatively less statistical support (Figure 1). ITS, tef1, and rpb2 base pair differences of R. sinensis (GMBCC1119) and R. siamensis (MFLUCC 11-0149) are 15.20% (62/515), 18.53% (192/1036), and 6.60% (60/909) respectively. Base pair differences of ITS and rpb2 genes locus of Roussoella sinensis (GMBCC1119) and R. yunnanensis (MFLUCC 18-0115) are 15.20% (71/467) and 5.51% (50/907), respectively. However, tef1 sequences from R. yunnanensis (MFLUCC 18-0115) are not available in the GenBank database. Roussoella doimaesalongensis was introduced by Thambugala et al. [40] based on a specimen collected on dead bamboo in Thailand. However, only the asexual morph is known for R. doimaesalongensis [40]. According to the recommendations suggested by Jeewon and Hyde [38] regarding base pair differences, Roussoella sinensis is a phylogenetically different species from R. doimaesalongensis, R.
siamensis, and R. yunnanensis; hence, we introduced Roussoella sinensis as a new member to Roussoella.Dai and Hyde, Fungal Diversity 82:37 (2016) Figure 11.
Figure 11
Roussoella tuberculata (GMB1317, new country record). (a) Bamboo specimen; (b) black conidioma on host surface; (c) vertical sections of conidiomata; (d–h) conidiogenous cells and developing conidia; (i–l) conidia; m: germinating conidium; (m) germinating conidium; (n) cultures on PDA from above and below after two weeks; (o) cultures on PDA from above and below after four weeks. Scale bars: (b) = 500 µm, (c) = 200 µm, (d–f,m) = 15 µm, (h–l) = 10 µm.
Index Fungorum number: IF 552027.Sexual morph: Undetermined. Description of asexual morph see Dai et al. [17].Distributions: China, Thailand.Material examined: China, Yunnan Province, Jinghong, Mengla, Bamboo Garden, Xishuangbanna Topic Botany Garden (101°24′41.74″ N, 21°93′40.94″ E, 507.88 m), on dead culms of bamboo, 15 August 2020, Dong-Qin Dai, DDQ02000 (GMB1317); living culture, GMBCC1123 (new country record), GenBank accession number SSU: OM891834.Notes: Our fresh collection (GMB1317) shares similar morphologies of R. tuberculata which was introduced by Dai et al. [17] from Thailand. Roussoella tuberculata is characterized by large, immersed, eustromatic conidiomata, which are rather flattened, phialidic, annellidic conidiogenous cells and conidia covered by small tubercules [17]. Usually, the conidia of Roussoella species comprise verrucose wall ornamentation [1,39], while R. tuberculata has conidia with small and roughened tubercules. The above morphological identification is confirmed by our phylogenetic analyses and base-pair comparisons as well (100% MLBS, 1.00 BYPP, Figure 1). This is the first record of this species from China.Dai and Wijayaw., sp. nov. Figure 12.
Figure 12
Roussoella uniloculata (GMB1288, holotype). (a) Bamboo specimen; (b) black ascostroma on host surface; (c) vertical section of ascomata; (d) pseudoparaphyses; (e–h) ascospores; (i) germinating ascospore; (j–m) asci; (n,o) cultures on PDA from above and below. Scale bars: (b) = 300 µm, (c) = 50 µm, (d,j–m) = 30 µm, (e–i) = 10 µm.
Index Fungorum number: IF 556016.Etymology: Uniloculata means single locule.Holotype: GMB1288.Saprobic on decaying bamboo culms. Sexual morph: Ascostromata 250–350 μm diam., forming under raised, visible, black, round areas on host surface and becoming prominent when maturity, containing a single locule. Locules 120–145 μm high, 270–380 μm diam., solitary, subglobose to ellipsoidal, brown, with an inconspicuous central ostiole. Wall of locules comprising host and fungal tissues, thin, 7–10 μm wide, composed of dark brown cells of textura angularis. Hamathecium comprises 1–2.5 μm wide, numerous, anastomosing branched cellular pseudoparaphyses, rough-walled, and embedded in a gelatinous matrix. Asci 61.5–102.5 × 4–6.5 μm ( = 78.8 × 5.2 μm, n = 20), 6–8-spored, bitunicate, cylindrical, with a short knob-like pedicel, with an ocular apical chamber. Ascospores 8.5–12 × 3.5–4.5(−4.8) μm ( = 10.3 × 4.1 μm, n = 20), uniseriate, ellipsoid to broad fusiform, 2-celled, upper cells bigger, occasionally curved, brown, constricted at the septum, with longitudinal striations and surrounded by a mucilaginous sheath. Asexual morph: Undetermined.Culture characters: Ascospores germinating on PDA within 24 h and germ tubes produced from both cells. Colonies slow-growing, 30 mm diam. after 20 days at 28 °C, under 24 h dark, elliptic to round, with irregular margin, milk-white at margin, and light brown to dark brown at the central.Distributions: China.Material examined: China, Yunnan Province, Ruili, Dehong Yinlong Village (97°55′40.6″ N, 24°15′49.3″ E, 912 m), on dead culms of bamboo, 16 August 2020, Dong-Qin Dai, DDQ01005 (holotype GMB1288), ex-type GMBCC1110, GenBank accession number SSU: OM891829; Ibid. (IFRD500-23 isotype), ex-isotype IFRDCC 3102; Ibid. DDQ01005-2, GenBank accession number SSU: OM891835.Notes: Roussoella uniloculata (GMB1288) formed a basal lineage in a clade comprising R. angusta (MFLUCC 15-0186, ex-type), R. chiangraina (MFLUCC 10-0556), R. kunmingensis (KUMCC 18-0128), R. magnatum (MFLUCC 15-0185), R. mediterranea (MUT 5369), R. neopustulans (MFLUCC 11-0609), and R. padinae (MUT 5503) with high statistical supports (100% MLBP, 1.00 BYPP) (Figure 1). Base pair differences of ITS and rpb2 gene loci of R. uniloculata and other related species showed that they are phylogenetically distinct species [38] (Table 6).
Table 6
Base pair differences of ITS and RPB2 gene loci of R. uniloculata and other related species.
Species
ITS
rpb2
R. chiangraina
7.22% (33/457)
3.68% (34/925)
R. kunmingensis
5.29% (25/472)
4.61% (39/845)
R. mediterranea
4.26% (20/469)
3.84% (25/651)
R. neopustulans
5.56% (27/469)
3.80% (35/922)
R. padinae
4.71% (22/467)
3.78% (35/925)
Roussoella uniloculata is similar to R. yunnanensis and R. siamensis in having ellipsoidal to fusiform and 2-celled ascospores with longitudinal striations. However, R. uniloculata can be distinguished from R. yunnanensis in having smaller ascostromata (250–350 μm diam. vs. 1–1.3 mm diam.) with single locule vs. with multiple locules, and asci with a short knob-like pedicel vs. asci with a slightly furcate short pedicel [5]. Roussoella uniloculata can be distinguished from R. siamensis in having smaller ascostromata (250–350 μm diam. vs. 620–750 μm diam. [17], higher locules (120–145 μm high vs. 70–120 μm high; [17]. Roussoella uniloculata can be compared with R. pustulans, in having small ascospores with bigger upper cells (8.5–12 × 3.5–4.5 μm vs. 10–16 × 4–5 μm) [1]. However, R. uniloculata differs by smaller ascostromata (165–300 μm diam. vs. 1 mm diam.), and in the phylogenetic tree, they form separate lineages (Figure 1). Moreover, morphology, host, and distribution of the new species were compared with the known species which are lacking sequence data (Table 7). Hence, based on molecular phylogenetic and morphological analyses, we introduced R. uniloculata as a novel species of Roussoella.
Table 7
Ascospores, host, and distribution comparison of eleven sequence lacking known Roussoella taxa with three new species in this study. “-”: not available in the protologue.
Taxa
Ascospores
Host
Known Distribution
References
Roussoella aequatoriensis Hyde
26–33 × 9–11 µm, fusiform-ellipsoidal, 1-septate, constricted at the septum, brown, with oblique wall, striations running the entire length of the ascospore and with yellow coloured mucilaginous, pad-like appendages at each end
Palm
Ecuador, Puerto Rico
[41]
R. alveolata Ju, Rogers, and Huhndorf
34–42 × 11–13 µm, with ridges between the longitudinal striations.
Bamboo
Indonesia (Java)
[41]
R. angustispora Zhou, Cai, and Hyde
24–28 × 6–8 µm, ellipsoid-fusiform, 1-septate, constricted at the septum, brown, with reticulate wall ornamentations
Bamboo (Bambusa changii)
China (Hong Kong)
[42]
R. bambusae (Pat.) Monod
23 × 5 µm, elliptical elongated, often acute at both ends, not constricted at the septum, colorless and surrounded by a fleeting hyaline sheath
-
-
[43]
R. calamicola Fröhl., Hyde, and Aptroot
20–27(–29.5) × 7–8.5 μm, ellipsoidal, 1-septatae, brown, verrucose, surrounded by a mucilaginous sheath
Calamus
Australian (Queensland)
[44]
R. chilensis (Speg.) Ju, Rogers, and Huhndorf
asci contain only four 20–25(–28) × 6–8 µm, ascospores with longitudinal wall striations This fungus is unique amongst Roussoella in having four ascospores per ascus
Bamboo (Chusquea)
Chile
[41]
R. donacicola (Speg.) Ju, Rogers, and Huhndorf
ascospores are (6–)6.5–8(–8.5) × 3–3.5 µm, with longitudinal striations
Bamboo (Arundo, Phyllostachys)
Argentina, France
[41]
R. palmicola Fröhl., Hyde, and Aptroot
12.5–24 × 2.5–4 μm, fusiform, 1-septate, brown, striate, with small pads of mucilage at both ends
Rattan (Calamus flabellatus)
Brunei
[44]
R. saltuensis Hyde
25–30 × 8–11 µm, overlapping ellipsoidal, 1-septate, constricted at the central septum, dark-brown, covered with irregular longitudinal striations and surrounded by a mucilaginous sheath which spreads in water
Palm (indet.)
Ecuador
[41]
R. serrulata (Ellis and Martin) Hyde and Aptroot
18–20 × 5–6 µm, characterized by the often deeply (up to 1 mm) immersed ascomata
Pam (Serenoa serrulata)
USA, Florida
[12]
R. verruculosa Cand. and Katum
7–8 × 5 µm, fusoid, septate, slightly constricted at the septum, rounded at the ends, verruculose
Bamboo (Phyllostachys mitis)
France
[45]
R. papillate Dai and Wijayaw
15–17 × 5.5–7 μm, brown to dark brown, rough-walled, with longitudinal striations
Bamboo
China (Yunnan)
In this study
R. sinensis Dai and Wijayaw
16.5–20.5 × 6–7.5 μm, ellipsoid to broad fusiform, upper cells bigger, constricted at the septum, narrowly at both ends, with longitudinal striations
Bamboo
China (Yunnan)
In this study
R. uniloculata Dai and Wijayaw
8.5–12× 3.5–4.5, ellipsoid to broad fusiform, 2-celled, upper cells bigger, occasionally curve, brown, constricted at the septum, with longitudinal striations
Bamboo
China (Yunnan)
In this study
4. Discussion
The family Roussoellaceae (in Pleosporales), comprises the genera Neoroussoella, Roussoella and Roussoellopsis [1], which are saprobes in different hosts, especially bamboo and palms (terrestrial and aquatic environments) or human pathogens [46]. Recently, three new species have been isolated from marine environments [8]. Currently, the family comprises 12 genera reported as sexual, asexual, or holomorph [1,8,9,17,46,47]. This study introduced four new species of Roussoella: three reported as sexual morphs (i.e., R. papillate, R. sinensis, and R. uniloculata), and another as an asexual morph (i.e., R. multiloculate). All species have been reported as saprobes of bamboo plants.However, asexual morphs of R. kunmingensis (described initially as a sexual taxon [8]) and R. padinae (described initially as without sexual or asexual characteristics fide [8]) were reported for the first time in the present study. Sexual and asexual links were established based on DNA sequence analyses (Figure 1). The sexual morph of R. kunmingensis was also reported from Kunming, Yunnan Province. Nevertheless, Poli et al. [8] introduced R. padinae from brown alga Padina pavonica (Italy), and thus from the marine environment. This finding indicates that Roussoella species present a broad range of habitats and distribution. Further, the same species could be reported from different environments but as its alternative morph.Neoroussoella bambusae (Thailand [1]), R. japanensis (Japan [1]), R. nitidula (Malaysia [1]), R. scabrispora (Indonesia [41]), and R. tuberculata (Thailand) species were reported from China for the first time. These records confirmed that the members of Roussoellaceae have a broad range of geographical distribution in Southeast Asia and Central Asia. We predict that novel species could occur in other tropical Asian countries, such as India, Laos, Myanmar, Pakistan, and Sri Lanka.The genus Roussoella comprises 51 epithets [47], but only 46 species are listed in Species Fungorum [47]. Eight species were transferred to Dothideaceae, Thyridariaceae, Phyllachoraceae, and Diaporthales [2,7,28,48]. Further, two species were transferred to Neoroussoella and Pseudoroussoella, which are also nested in Roussoellaceae [49]. Moreover, R. hysterioides var. minuta (Hino and Katum) Hino and Katum were listed as synonyms of R. hysterioides in Index Fungorum [47], and two species R. phyllostachydis and R. minutella were synonymized as R. pustulans by Hyde [41]. Thus, a total of 33 taxa were accepted in Roussoellaceae. Hongsanan et al. [46] mentioned that DNA sequence data are available only for 22 species. Hence, it is essential to recollect known species lacking DNA sequence data and designate epitypes. In this study, we compared the morphological characters of the sequence lacking Roussoella taxa [12,41,42,43,44,45,50] prior to introducing the new taxa (Table 7).
Authors: P W Crous; R K Schumacher; A Akulov; R Thangavel; M Hernández-Restrepo; A J Carnegie; R Cheewangkoon; M J Wingfield; B A Summerell; W Quaedvlieg; T A Coutinho; J Roux; A R Wood; A Giraldo; J Z Groenewald Journal: Fungal Syst Evol Date: 2019-02-05