Literature DB >> 35624337

Dysregulation and therapeutic targeting of RNA splicing in cancer.

Robert F Stanley1, Omar Abdel-Wahab2.   

Abstract

High-throughput sequencing and functional characterization of the cancer transcriptome have uncovered cancer-specific dysregulation of RNA splicing across a variety of cancers. Alterations in the cancer genome and dysregulation of RNA splicing factors lead to missplicing, splicing alteration-dependent gene expression and, in some cases, generation of novel splicing-derived proteins. Here, we review recent advances in our understanding of aberrant splicing in cancer pathogenesis and present strategies to harness cancer-specific aberrant splicing for therapeutic intent.
© 2022. Springer Nature America, Inc.

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Year:  2022        PMID: 35624337      PMCID: PMC9551392          DOI: 10.1038/s43018-022-00384-z

Source DB:  PubMed          Journal:  Nat Cancer        ISSN: 2662-1347


  139 in total

Review 1.  The RNAissance family: SR proteins as multifaceted regulators of gene expression.

Authors:  Jonathan M Howard; Jeremy R Sanford
Journal:  Wiley Interdiscip Rev RNA       Date:  2014-08-22       Impact factor: 9.957

Review 2.  Cryo-EM snapshots of the human spliceosome reveal structural adaptions for splicing regulation.

Authors:  Sebastian M Fica
Journal:  Curr Opin Struct Biol       Date:  2020-07-24       Impact factor: 6.809

3.  Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing.

Authors:  Qun Pan; Ofer Shai; Leo J Lee; Brendan J Frey; Benjamin J Blencowe
Journal:  Nat Genet       Date:  2008-11-02       Impact factor: 38.330

4.  Molecular architecture of the human U4/U6.U5 tri-snRNP.

Authors:  Dmitry E Agafonov; Berthold Kastner; Olexandr Dybkov; Romina V Hofele; Wen-Ti Liu; Henning Urlaub; Reinhard Lührmann; Holger Stark
Journal:  Science       Date:  2016-02-18       Impact factor: 47.728

5.  The "spliceosome": yeast pre-messenger RNA associates with a 40S complex in a splicing-dependent reaction.

Authors:  E Brody; J Abelson
Journal:  Science       Date:  1985-05-24       Impact factor: 47.728

Review 6.  Expansion of the eukaryotic proteome by alternative splicing.

Authors:  Timothy W Nilsen; Brenton R Graveley
Journal:  Nature       Date:  2010-01-28       Impact factor: 49.962

7.  From structure to systems: high-resolution, quantitative genetic analysis of RNA polymerase II.

Authors:  Hannes Braberg; Huiyan Jin; Erica A Moehle; Yujia A Chan; Shuyi Wang; Michael Shales; Joris J Benschop; John H Morris; Chenxi Qiu; Fuqu Hu; Leung K Tang; James S Fraser; Frank C P Holstege; Philip Hieter; Christine Guthrie; Craig D Kaplan; Nevan J Krogan
Journal:  Cell       Date:  2013-08-08       Impact factor: 41.582

8.  The architecture of the spliceosomal U4/U6.U5 tri-snRNP.

Authors:  Thi Hoang Duong Nguyen; Wojciech P Galej; Xiao-chen Bai; Christos G Savva; Andrew J Newman; Sjors H W Scheres; Kiyoshi Nagai
Journal:  Nature       Date:  2015-06-24       Impact factor: 49.962

9.  Comparative analysis of the transcriptome across distant species.

Authors:  Mark B Gerstein; Joel Rozowsky; Koon-Kiu Yan; Daifeng Wang; Chao Cheng; James B Brown; Carrie A Davis; LaDeana Hillier; Cristina Sisu; Jingyi Jessica Li; Baikang Pei; Arif O Harmanci; Michael O Duff; Sarah Djebali; Roger P Alexander; Burak H Alver; Raymond Auerbach; Kimberly Bell; Peter J Bickel; Max E Boeck; Nathan P Boley; Benjamin W Booth; Lucy Cherbas; Peter Cherbas; Chao Di; Alex Dobin; Jorg Drenkow; Brent Ewing; Gang Fang; Megan Fastuca; Elise A Feingold; Adam Frankish; Guanjun Gao; Peter J Good; Roderic Guigó; Ann Hammonds; Jen Harrow; Roger A Hoskins; Cédric Howald; Long Hu; Haiyan Huang; Tim J P Hubbard; Chau Huynh; Sonali Jha; Dionna Kasper; Masaomi Kato; Thomas C Kaufman; Robert R Kitchen; Erik Ladewig; Julien Lagarde; Eric Lai; Jing Leng; Zhi Lu; Michael MacCoss; Gemma May; Rebecca McWhirter; Gennifer Merrihew; David M Miller; Ali Mortazavi; Rabi Murad; Brian Oliver; Sara Olson; Peter J Park; Michael J Pazin; Norbert Perrimon; Dmitri Pervouchine; Valerie Reinke; Alexandre Reymond; Garrett Robinson; Anastasia Samsonova; Gary I Saunders; Felix Schlesinger; Anurag Sethi; Frank J Slack; William C Spencer; Marcus H Stoiber; Pnina Strasbourger; Andrea Tanzer; Owen A Thompson; Kenneth H Wan; Guilin Wang; Huaien Wang; Kathie L Watkins; Jiayu Wen; Kejia Wen; Chenghai Xue; Li Yang; Kevin Yip; Chris Zaleski; Yan Zhang; Henry Zheng; Steven E Brenner; Brenton R Graveley; Susan E Celniker; Thomas R Gingeras; Robert Waterston
Journal:  Nature       Date:  2014-08-28       Impact factor: 49.962

10.  Alternative isoform regulation in human tissue transcriptomes.

Authors:  Eric T Wang; Rickard Sandberg; Shujun Luo; Irina Khrebtukova; Lu Zhang; Christine Mayr; Stephen F Kingsmore; Gary P Schroth; Christopher B Burge
Journal:  Nature       Date:  2008-11-27       Impact factor: 49.962

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  2 in total

1.  Expanded analysis of high-grade astrocytoma with piloid features identifies an epigenetically and clinically distinct subtype associated with neurofibromatosis type 1.

Authors:  Patrick J Cimino; Courtney Ketchum; Rust Turakulov; Omkar Singh; Zied Abdullaev; Caterina Giannini; Peter Pytel; Giselle Yvette Lopez; Howard Colman; MacLean P Nasrallah; Mariarita Santi; Igor Lima Fernandes; Jeff Nirschl; Sonika Dahiya; Stewart Neill; David Solomon; Eilis Perez; David Capper; Haresh Mani; Dario Caccamo; Matthew Ball; Michael Badruddoja; Rati Chkheidze; Sandra Camelo-Piragua; Joseph Fullmer; Sanda Alexandrescu; Gabrielle Yeaney; Charles Eberhart; Maria Martinez-Lage; Jie Chen; Leor Zach; B K Kleinschmidt-DeMasters; Marco Hefti; Maria-Beatriz Lopes; Nicholas Nuechterlein; Craig Horbinski; Fausto J Rodriguez; Martha Quezado; Drew Pratt; Kenneth Aldape
Journal:  Acta Neuropathol       Date:  2022-10-22       Impact factor: 15.887

Review 2.  Cytogenetic and Genetic Abnormalities with Diagnostic Value in Myelodysplastic Syndromes (MDS): Focus on the Pre-Messenger RNA Splicing Process.

Authors:  Nathalie Douet-Guilbert; Benoît Soubise; Delphine G Bernard; Marie-Bérengère Troadec
Journal:  Diagnostics (Basel)       Date:  2022-07-07
  2 in total

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