Literature DB >> 35609162

Identifying Suicidal Ideation and Attempt From Clinical Notes Within a Large Integrated Health Care System.

Fagen Xie1, Deborah S Ling Grant1, John Chang1, Britta I Amundsen1, Rulin C Hechter1.   

Abstract

PURPOSE: The purpose of this study was to develop a natural language processing algorithm to identify suicidal ideation/attempt from free-text clinical notes.
METHODS: Clinical notes containing prespecified keywords related to suicidal ideation/attempts from 2010 to 2018 were extracted from our organization's electronic health record system. A random sample of 864 clinical notes was selected and equally divided into 4 subsets. These subsets were reviewed and classified as 1 of the following 3 suicidal ideation/attempt categories (current, historical, and no) by experienced research chart abstractors. The first 3 data sets were used to develop the rule-based computerized algorithm sequentially and the fourth data set was used to evaluate the algorithm's performance. The validated algorithm was then applied to the entire study sample of clinical notes.
RESULTS: The computerized algorithm correctly identified 23 of the 26 confirmed current suicidal ideation/attempts and all 10 confirmed historical suicidal ideation/attempts in the validation data set. It produced an 88.5% sensitivity and a 100.0% positive predictive value for current suicidal ideation/attempts, and a 100.0% sensitivity and positive predictive value for historical suicidal ideation/attempts. After applying the computerized algorithm to the entire set of study notes, we identified a total of 1,050,287 current ideation/attempt events and 293,037 historical ideation/attempt events documented in clinical notes. Those for which current ideation/attempt events were documented were more likely to be female (59.5%), 25-44 years old (28.3%), and White (43.4%).
CONCLUSION: Our study demonstrated that a computerized algorithm can effectively identify suicidal ideation/attempts from clinical notes. This algorithm can be utilized in support of suicide prevention research programs and patient care quality improvement initiatives.

Entities:  

Mesh:

Year:  2022        PMID: 35609162      PMCID: PMC9126541          DOI: 10.7812/TPP/21.102

Source DB:  PubMed          Journal:  Perm J        ISSN: 1552-5767


  34 in total

Review 1.  A systematic review of validated methods for identifying suicide or suicidal ideation using administrative or claims data.

Authors:  James T Walkup; Lisa Townsend; Stephen Crystal; Mark Olfson
Journal:  Pharmacoepidemiol Drug Saf       Date:  2012-01       Impact factor: 2.890

2.  Suicides and suicide attempts among active component members of the U.S. Armed Forces, 2010-2012; methods of self-harm vary by major geographic region of assignment.

Authors:  William P Corr
Journal:  MSMR       Date:  2014-10

3.  The use of machine learning in the study of suicidal and non-suicidal self-injurious thoughts and behaviors: A systematic review.

Authors:  Taylor A Burke; Brooke A Ammerman; Ross Jacobucci
Journal:  J Affect Disord       Date:  2018-11-12       Impact factor: 4.839

4.  Trends in suicide ideation, plans, gestures, and attempts in the United States, 1990-1992 to 2001-2003.

Authors:  Ronald C Kessler; Patricia Berglund; Guilherme Borges; Matthew Nock; Philip S Wang
Journal:  JAMA       Date:  2005-05-25       Impact factor: 56.272

5.  Recurrent suicidal ideation in young adults.

Authors:  Erika N Dugas; Nancy C Low; Erin K O'Loughlin; Jennifer L O'Loughlin
Journal:  Can J Public Health       Date:  2015-04-30

Review 6.  Adopting electronic medical records in primary care: lessons learned from health information systems implementation experience in seven countries.

Authors:  D A Ludwick; John Doucette
Journal:  Int J Med Inform       Date:  2008-07-21       Impact factor: 4.046

7.  Suicide Note Classification Using Natural Language Processing: A Content Analysis.

Authors:  John Pestian; Henry Nasrallah; Pawel Matykiewicz; Aurora Bennett; Antoon Leenaars
Journal:  Biomed Inform Insights       Date:  2010-08-04

8.  Performance evaluation of Unified Medical Language System®'s synonyms expansion to query PubMed.

Authors:  Nicolas Griffon; Wiem Chebil; Laetitia Rollin; Gaetan Kerdelhue; Benoit Thirion; Jean-François Gehanno; Stéfan Jacques Darmoni
Journal:  BMC Med Inform Decis Mak       Date:  2012-02-29       Impact factor: 2.796

9.  Screening pregnant women for suicidal behavior in electronic medical records: diagnostic codes vs. clinical notes processed by natural language processing.

Authors:  Qiu-Yue Zhong; Elizabeth W Karlson; Bizu Gelaye; Sean Finan; Paul Avillach; Jordan W Smoller; Tianxi Cai; Michelle A Williams
Journal:  BMC Med Inform Decis Mak       Date:  2018-05-29       Impact factor: 2.796

10.  Identification of suicidal behavior among psychiatrically hospitalized adolescents using natural language processing and machine learning of electronic health records.

Authors:  Nicholas J Carson; Brian Mullin; Maria Jose Sanchez; Frederick Lu; Kelly Yang; Michelle Menezes; Benjamin Lê Cook
Journal:  PLoS One       Date:  2019-02-19       Impact factor: 3.240

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