| Literature DB >> 35603466 |
Xu-Hui Zhu1, Long-Xi Han1, Rong-Jie Zhang1, Peng Zhang1, Fu-Gang Chen2, Jia Yu3,4, Heng Luo3,4, Xiu-Wu Han1.
Abstract
This study explored the regulation of different perfusion methods on ischemia-reperfusion injury in donor kidneys. In this study, renal cortical/medullary tissue specimens were collected from porcine kidneys donors using different perfusion methods at various time points. Hematoxylin and eosin (H&E) staining was used to test the histological differences. Differentially expressed micro-ribonucleic acids (miRNAs) were identified by miRNA transcriptome sequencing. Reverse transcription-polymerase chain reaction (RT-PCR) tests were used to verify the changes in miRNAs in the kidney tissue taken from different perfusion groups. The related signaling pathways and the changes in the cell functions of different perfusion groups were analyzed by Kyoto Encyclopedia of Genes and Genomes (KEGG) /Gene Ontology (GO) bioinformatics analyses. The effects of miRNA overexpression on the metabolism and proliferation of HK2 cells were detected by ATP kit and MTT assay. The H&E staining results showed that there were essentially no differences in the tissue samples among different perfusion groups at and before 12 h compared with a control group. The quantitative PCR results revealed that there was essentially no change in the expression of ssc-miR-451, ssc-miR-1285, and ssc-miR-486 in the cis infusion or joint infusion kidney groups, and their expression was significantly down-regulated over time in the trans-infusion kidney group. The bioinformatics analysis showed that the cellular component, molecular function, and biological processes of the kidney tissue, which had been perfused using three methods, had been consistently affected. The most significant changes after perfusion occurred in the intracellular metabolism signaling pathways. Furthermore, the energy metabolism and proliferation of the HK2 cells were significantly inhibited after the overexpression of miR-451. Specific miRNA markers, such as miR-451, may play a negative regulatory role in cell metabolism following the perfusion of kidney transplants using different methods.Entities:
Keywords: Donor kidney; RNA-sequencing; different perfusion preservation methods; miRNA marker
Mesh:
Substances:
Year: 2022 PMID: 35603466 PMCID: PMC9275911 DOI: 10.1080/21655979.2022.2068739
Source DB: PubMed Journal: Bioengineered ISSN: 2165-5979 Impact factor: 6.832
qRT-PCR primer sequence list
| A. qRT-PCR primer sequence in pig | ||
|---|---|---|
| Gene | Sequence(5’-3’) | |
| ssc-miR-451 RT primer | GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACAACTCA | |
| ssc-miR-451 FW | GCCCGCaaaccgTTaccaTTacT | |
| ssc-miR-451 RV | ATCCAGTGCAGGGTCCGAGG | |
| ssc-miR-486 RT primer | GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACCTCGGG | |
| ssc-miR-486 FW | TccTgTacTgagcTgccccgag | |
| ssc-miR-486 RV | ATCCAGTGCAGGGTCCGAGG | |
| ssc-miR-1285 RT primer | GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACACGGGG | |
| ssc-miR-1285 FW | CTgggcaacaTagcgagaCCC | |
| ssc-miR-1285 RV | ATCCAGTGCAGGGTCCGAGG | |
| ssc-U6 FW | CCCTTCGGGGACATCCGATA | |
| ssc-U6 RV | TTTGTGCGTGTCATCCTTGC | |
| B. qRT-PCR primer sequence in human | ||
| Gene | Sequence(5’-3’) | |
| Hsa-miR-451-5p RT primer | GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACAACTCA | |
| Hsa-miR-451-5p FW | CCCGAAACCGTTACCATTACTG | |
| Hsa-miR-451-5p RV | ATCCAGTGCAGGGTCCGAGG | |
| Hsa-miR-486-5p RT primer | GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACCTCGCG | |
| Hsa-miR-486-5p FW | TCCTGTACTGAGCTGCCCCGAG | |
| Hsa-miR-486-5p RV | ATCCAGTGCAGGGTCCGAGG | |
| Hsa-miR-1285-3p RT primer | GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGAC | |
| Hsa-miR-1285-3p FW | TCTGGGCAACAAAGTGAGACCT | |
| Hsa-miR-1285-3p RV | ATCCAGTGCAGGGTCCGAGG | |
Figure 1.The H&E staining results. Eyepiece x10 + objective x20. The experiment was repeated three times independently.
Figure 2.The Venn diagrams and qPCR results. (a–b) Venn diagrams of the CK, TK, and JK groups at 0 and 12 h. C. The qPCR verification results of miR-451, miR-1285, and miR-486 in kidney tissue samples taken from different perfusion groups at 0 and 12 h. D. The qPCR results of miR-451, miR-1285, and miR-486 in kidney tissue samples taken from different perfusion groups at 0 and 12 h. The experiment was repeated three times independently. Compared with the negative control group, * P < 0.05, **P < 0.01.
Figure 3.Bubble maps of the KEGG signaling pathway enrichment analysis of the perfusion groups at 0 (a) and 12 (b) h.
Figure 4.(a) The results of the qPCR assays after the transfection of the HK2 cells with three miRNA mimics. (b) The detection results of the ATP energy kits after transfection of the HK2 cells with miRNA mimics. (c) A morphological diagram of the HK2 cells after transfection with miRNA mimics; eyepiece x10 + objective x10. (d) The results of the MTT assays after transfection with miRNA mimics.