| Literature DB >> 35599845 |
Buwei Hu1,2, Dandan Zhou3, Haoming Wang4, Ning Hu1, Weikang Zhao1.
Abstract
Change of biophysical factors in tissue microenvironment is an important step in a chronic disease development process. A mechanical and biochemical factor from cell living microniche can regulate cell epigenetic decoration and, therefore, further induce change of gene expression. In this review, we will emphasize the mechanism that biophysical microenvironment manipulates cell behavior including gene expression and protein decoration, through modifying histone amino acid residue modification. The influence given by different mechanical forces, including mechanical stretch, substrate surface stiffness, and shear stress, on cell fate and behavior during chronic disease development including tumorigenesis will also be teased out. Overall, the recent work summarized in this review culminates on the hypothesis that a mechanical factor stimulates the modification on histone which could facilitate disease detection and potential therapeutic target.Entities:
Year: 2022 PMID: 35599845 PMCID: PMC9117061 DOI: 10.1155/2022/9179111
Source DB: PubMed Journal: Stem Cells Int Impact factor: 5.131
Figure 1Mechanical cues regulate histone modifications to modulate cell fate. Various mechanical stimuli, including substrate stiffness, mechanical stretch, topological substrate, shear stress, compression, and squeezing, modulate histone modifications, which regulate chromatin reorganization and cell plasticity.
Summary of the effects of matrix stiffness on histone modifications in cell plasticity.
| Cell type | Stiffness tested | Epigenetic modification | Function | Ref. |
|---|---|---|---|---|
| H1299 | 0.5-25 kPa | DNA methylation | RASSF1A promoter methylation | [15] |
| MDA-MB-231 | 0.5-50 kPa | Histone demethylation | ECM stiffness regulates histone demethylase JMJD1a nuclear aggregation | [22] |
| Fibroblast | 0.2-64 kPa | H3K9me2/3 | Stiff matrices increase global H3K9me2/3 | [20] |
| A549 | 1-20 kPa | DNA hypomethylation/demethylation | Observed DNA hypomethylation/demethylation under stiff matrix conditions | [19] |
| MEFs | 0.5-100 kPa | Histone deacetylation | HDAC4 expression increased | [23] |
| HUASMCs | 2.16-16.75 kPa | DNA methylation | Substrate stiffening downregulation of DNMT1 and DNA methylation | [21] |
| AGS | 0.5-7 kPa | DNA methylation | Stiffer substrate induces reduction in global methylation | [16] |
| TRC | 50-1050 Pa | DNA methylation | Soft surface demethylates p21 and 27 promoters | [17] |
| DLD-1 | 0.4-25.6 kPa | H3K4me3 | Reduction of H3K4me3 on softer matrices | [19] |
| TRC | 50-1050 Pa | H3K9me | Softening of the matrix reduces H3K9 methylation | [18] |
| MEF | 0.5-20 kPa | Microtubule acetylation | Soft matrix modulates microtubule acetylation | [24] |
MSCs: mesenchymal stem cells; HSCs: hepatic stellate cells; hMSCs: human mesenchymal stem cells; MCF10A: mammary epithelial cells; A549: human alveolar epithelial adenocarcinoma cells; DLD-1: colorectal adenocarcinoma cells; MEFs: mouse embryonic fibroblasts; HUASMCs: human umbilical artery smooth muscle cell; H1299: human lung adenocarcinoma cell; MDA-MB-231: breast cancer cell; AGS: human gastric cancer cell; TRC: tumor repopulating cell; HDAC: histone deacetylase.
Summary or examples of the effects of mechanical stretch on histone modifications.
| Cell type | Stretch parameters | Epigenetic modification | Function | Ref |
|---|---|---|---|---|
| SMC | Cyclic strain, 10% elongation, 1.25 Hz | MicroRNA 33 | Stretch represses miR33 expression | [35] |
| Epithelial cell | 10-33% elongation | Histone H3P | Promoted cell proliferation | [34] |
| hAT-MSC | 2.5-15% elongation, 1 Hz | DNA demethylation | GNAS CpG demethylation | [28] |
| HC | 10% elongation, 0.5 Hz | miR-365 reduced HDAC4 | Cartilage degeneration, downregulated ACAN | [32] |
| MLVEC | Cyclic stretch, 20% elongation, 30 cycles/min | HDAC6 | Activated HDAC6 induces deacetylation of a-tubulin | [29] |
| HC | Cyclic stretch, 10% elongation, 0.5 Hz | HDAC | HDAC inhibitor downregulates RUNX-2, ADAMTS-5, and MMP-3 expression | [31] |
| HPMEC | Cyclic stretch, 20% elongation | Differentially expressed lncRNA (DEL) | lncRNA might regulate inflammation and fibrosis | [33] |
| C2C12 | Cyclic stretch, 5% elongation | MicroRNA 146a | Increasing miR-146 expression which downregulates Numb | [36] |
| MC | 0.25 Hz | HDAC4, histone 3 deacetylation | Promoted collagen II and repressed RUNX2 expression | [30] |
MSC: mesenchymal stem cells; hAT-MSC: human adipose tissue multipotential stromal cell; SMC: smooth muscle cell; HC: human chondrocyte; MLVEC: mouse lung vascular endothelial cell; HPMEC: human pulmonary microvascular endothelial cell; C2C12: mouse myoblast; MC: murine chondrocyte.
Examples of shear stress-regulated histone modifications.
| Cell type | Shear stress | Histone/gene | Function | Ref. |
|---|---|---|---|---|
| VSMC | 15 dynes/cm2 | HDAC6 | Shear stress increases HDAC6 and 5downregulates acetylated tubulin | [38] |
| ECs | Interstitial flow | HDAC1 | Increased morphogenesis, MMP14, and angiogenesis | [37] |
| HUVECs | 5 dynes/cm2 shear stress | H3K4Me3, H3K27Ac | Increased thrombomodulin expression | [39] |
| HUVECs | 12 ± 4 dynes/cm2 pulsatile shear stress | H3K27ac | Ca2+-dependent eNOS activation, EC homeostasis | [42] |
| ECs | 20 dynes/cm2 laminar shear stress | EZH2 | Deceased cell cycle and promoted quiescence | [43] |
| HUVECs | 12 dynes/cm2 laminar flow | H3K27me3 | Confer an anti-inflammatory response | [44] |
| HUVECs | 15-30 dynes/cm2 shear stress | DNMT1 | Exhibited DNA hypermethylation | [45] |
| Chondrocytes | 0.5 MPa hydrostatic pressure | HDAC4 | Downregulate MMP-13, ADAMTS-5, and HDAC4 | [47] |
| ECs | Pulmonary hypertension | H4K12ac, H3K9me3 | Decreased expression of eNOS | [48] |
| GC | Intraocular pressure | HDACs | Enhanced glial activation following IR injury | [49] |
ECs: endothelial cells; ESCs: embryonic stem cells; HUVECs: human umbilical vein cells; VSMC: vascular smooth muscle cell; GC: glial cell.
Examples of nanotopography-regulated histone modifications.
| Cell type | Nanotopography | Epigenetic modification | Function | Ref |
|---|---|---|---|---|
| hASC | Nanotube array | HDAC | Promote osteogenic differentiation | [51] |
| Fibroblast | Microgroove | HDAC | Facilitate IPSC reprogramming | [53] |
| BMSC | Microgroove | HDAC | Not tested in research | [55] |
| Fibroblast | Microgroove | H3K4me3 | Promote induced dopaminergic neuron reprogramming | [54] |
| MSC | Micropatterning | H3K9ac, H3K9me3, H3K36me3 | Increase MSC proangiogenic activity and increase angiogenesis | [57] |
| MCF7 | Micropatterning | H3K9ac, H3K4me3, K27me3 | Induce transcriptome change and nuclear reprogramming, increase cell stemness | [58] |
| Fibroblast | Tissue 3D constraints | HDAC and H3K9ac | Increase cell sensitivity to mechanostimulation, promote essential processes for cell rejuvenation | [52] |
| MIC | Micropatterning | H3K4me2 and H3K9ac | Upregulate PRDM14 gene and influence melanoma heterogeneity | [59] |
| Cardiac progenitors | Microgroove | Histone acetylation | Increase myocardin, tbx5, and mef2c expression | [56] |
hASC: human adipose tissue-derived stem cell; BMSC: bone marrow mesenchymal stem cells; MIC: malignant melanoma-initiating cell.