| Literature DB >> 35592065 |
Tarekegn Fite1,2, Tadele Tefera1, Muluken Goftishu2, Tebekew Damte3.
Abstract
The Old World bollworm, Helicoverpa armigera (Hubner) (Lepidoptera: Noctuidae), is a globally distributed agricultural and horticultural insect pest. Despite the economic importance of this insect in Ethiopia, its genetic diversity and demographic history are poorly understood. We examined the nucleotide variation of the mitochondrial cytochrome c oxidase subunit I (COI) gene fragment of 74 H. armigera individuals from six collection sites in Ethiopia. We recorded 15 COI haplotypes in H. armigera, ten globally shared and five exclusive to Ethiopia (HaET15, HaET14, HaET10, HaET7, and HaET4). Haplotype HaET1 was the most widely geographically distributed and frequent (71.62%). Analysis of molecular variance (AMOVA) revealed a high and significant level of variation within H. armigera populations (θST = -0.0135). Negative values of the neutrality test and nonsignificant index of mismatch distribution supported the demographic expansion of H. armigera populations in Ethiopia; furthermore, this was also supported by the nonsignificant values of the sum of squared deviations (SSD) and raggedness index (r). The high genetic variation and population expansion of H. armigera have immense implications for devising locally adapted management strategies in area-wide integrated pest management IPM programs. However, a comprehensive study of H. armigera genetic diversity and population structure using various molecular markers is needed for future confirmation.Entities:
Keywords: Old World bollworm; haplotype; migration; population expansion; population genetic structure
Year: 2022 PMID: 35592065 PMCID: PMC9102519 DOI: 10.1002/ece3.8907
Source DB: PubMed Journal: Ecol Evol ISSN: 2045-7758 Impact factor: 3.167
FIGURE 1Geographical sites (districts/sampling sites) of H. armigera sampling in Ethiopia. The map was drawn using ArcGIS 10.3.1 software
Information on the sample collection description used for the study and available NCBI GenBank accessions of H. armigera from Ethiopia (n = sample size)
| Population Code |
| Districts | Latitude | Longitude | Elevation (m) | Host Plants | GenBank accessions |
|---|---|---|---|---|---|---|---|
| ChAD | 16 | Ada'a | 08°41.570′ | 039°03.545′ | 1865 | Chickpea | MW520816‐MW520825 |
| TTK | 14 | Toke Kutaye | 08°59.316′ | 037°47.398′ | 1956 | Tomato | MW520752‐MW520765 |
| CTK | 2 | Toke Kutaye | 08°56.316′ | 037°42.398′ | 1908 | Chili | MW520808‐MW520809 |
| SDD | 13 | Dandi | 09°01.303′ | 038°07.094′ | 2285 | Sunflower | MW520766‐MW520778 |
| NJR | 12 | Jima Rare | 09°18.520′ | 037°20.87′ | 2309 | Niger | MW520796‐MW520807 |
| PJR | 17 | Jima Rare | 09°18.780′ | 037°20.39′ | 2230 | Peas | MW520779‐MW520795 |
| Total | 74 |
Abbreviations: ChAD, populations collected from chickpea; CTK, populations collected from chili; NJR, populations collected from niger; PJR, populations collected from pea; SDD, populations collected from sunflower; TTK, populations collected from tomato.
Parameters of the genetic diversity test based on of H. armigera COI mtDNA sequence data from six populations in Ethiopia
| Population code |
| Number of polymorphic sites ( | Number of haplotypes ( | Haplotype diversity ( | Nucleotide diversity ( |
|---|---|---|---|---|---|
| ChAD | 16 | 7 | 5 | 0.533 | 0.00325 |
| TTK | 14 | 5 | 4 | 0.396 | 0.00208 |
| CTK | 2 | 1 | 2 | 1.00 | 0.00249 |
| SDD | 13 | 4 | 4 | 0.526 | 0.00217 |
| NJR | 12 | 2 | 3 | 0.318 | 0.00083 |
| PJR | 17 | 9 | 7 | 0.596 | 0.00329 |
| Total | 74 | 14 | 15 | 0.486 | 0.00242 |
Abbreviation: n, sample size.
COI haplotype distribution in each population of H. armigera in Ethiopia
| Haplotypes | ChAD | TTK | NJR | CTK | PJR | SDD | Total number |
|---|---|---|---|---|---|---|---|
| HaET1 [ | 11 | 11 | 10 | 1 | 11 | 9 | 53 |
| HaET2 [ | 1 | 1 | 2 | ||||
| HaET3 [ | 1 | 1 | 2 | ||||
| HaET4 | 1 | 1 | |||||
| HaET5 [ | 2 | 1 | 3 | ||||
| HaET6 [ | 1 | 1 | |||||
| HaET7 | 1 | 1 | |||||
| HaET8 [ | 1 | 1 | |||||
| HaET9 [ | 1 | 1 | |||||
| HaET10 | 1 | 1 | |||||
| HaET11 [ | 1 | 2 | 3 | ||||
| HaET12 [ | 1 | 1 | 2 | ||||
| HaET13 [ | 1 | 1 | |||||
| HaET14 | 1 | 1 | |||||
| HaET15 | 1 | 1 | |||||
| Total | 16 | 14 | 12 | 2 | 17 | 13 | 74 |
Black bold text indicates H. armigera haplotypes matching Ethiopian haplotypes.
Unique haplotypes, named with new Ethiopian names and deposited in the GenBank database of the National Center for Biotechnology Information (NCBI).
FIGURE 2TCS network of H. armigera haplotypes based on the COI gene region showing novel Ethiopian haplotypes (a) and their relations with haplotypes from other countries (b). Each circle represents a haplotype, and the circle size is proportional to haplotype frequency. Colors indicate the proportion of individual samples in different populations for the host plants (a) and countries (b). Tick marks between haplotypes represent single nucleotide polymorphisms
Analysis of molecular variance (amova) results for six populations of H. armigera based on variation of mtCOI gene sequences
| Source of variation | df | Sum of squares | Variance components | Variation (%) | Fixation indices |
|
|---|---|---|---|---|---|---|
| Among populations | 5 | 2.066 | −0.007va | −1.35 |
| 0.615 ± 0.017 |
| Within populations | 63 | 33.393 | 0.491vb | 101.35 | θ | 0.000 ± 0.000 |
| Total | 73 | 35.459 | 0.484 | 100 |
Fixation indices for among populations (F) and within populations (θ ).
Abbreviation: df, degrees of freedom.
Neutrality test and mismatch distribution analysis based on six populations of H. armigera COI mtDNA sequence data in Ethiopia
| Population code | Tajima's D test ( | Fu's | SSD ( |
|
|---|---|---|---|---|
| ChAD | −1.338 (.100) | −0.752 (.229) | .032 (.280) | .153 (.730) |
| TTK | −1.623 (.045) | −0.812 (.147) | .015 (.350) | .209 (.660) |
| CTK | .000 (1.00) | .000 (.245) | ||
| SDD | −1.09932 (.148) | −0.810 (.140) | .006 (.670) | .099 (.830) |
| NJR | −1.451 (.085) | −1.325 (.004) | .003 (.460) | .226 (.590) |
| PJR | −1.812 (.018) | −2.915 (.014) | .010 (.600) | .067 (.890) |
| Total | −1.220 (.232) | −1.102 (.129) | .011 (.393) | .126 (.616) |
Abbreviations: SSD, sum of squares deviation; r, raggedness index.
Values not estimated due to low sample size.