Literature DB >> 35582791

Slow improvement to the archiving quality of open datasets shared by researchers in ecology and evolution.

Dominique G Roche1,2,3, Ilias Berberi1, Fares Dhane2, Félix Lauzon2,4, Sandrine Soeharjono2, Roslyn Dakin1, Sandra A Binning2.   

Abstract

Many leading journals in ecology and evolution now mandate open data upon publication. Yet, there is very little oversight to ensure the completeness and reusability of archived datasets, and we currently have a poor understanding of the factors associated with high-quality data sharing. We assessed 362 open datasets linked to first- or senior-authored papers published by 100 principal investigators (PIs) in the fields of ecology and evolution over a period of 7 years to identify predictors of data completeness and reusability (data archiving quality). Datasets scored low on these metrics: 56.4% were complete and 45.9% were reusable. Data reusability, but not completeness, was slightly higher for more recently archived datasets and PIs with less seniority. Journal open data policy, PI gender and PI corresponding author status were unrelated to data archiving quality. However, PI identity explained a large proportion of the variance in data completeness (27.8%) and reusability (22.0%), indicating consistent inter-individual differences in data sharing practices by PIs across time and contexts. Several PIs consistently shared data of either high or low archiving quality, but most PIs were inconsistent in how well they shared. One explanation for the high intra-individual variation we observed is that PIs often conduct research through students and postdoctoral researchers, who may be responsible for the data collection, curation and archiving. Levels of data literacy vary among trainees and PIs may not regularly perform quality control over archived files. Our findings suggest that research data management training and culture within a PI's group are likely to be more important determinants of data archiving quality than other factors such as a journal's open data policy. Greater incentives and training for individual researchers at all career stages could improve data sharing practices and enhance data transparency and reusability.

Entities:  

Keywords:  data sharing; fair data; metascience; open science; public data archiving; reproducibility

Mesh:

Year:  2022        PMID: 35582791      PMCID: PMC9114975          DOI: 10.1098/rspb.2021.2780

Source DB:  PubMed          Journal:  Proc Biol Sci        ISSN: 0962-8452            Impact factor:   5.530


  35 in total

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Journal:  Evolution       Date:  2010-11-15       Impact factor: 3.694

3.  Scientific community: Journals must boost data sharing.

Authors:  Timothy H Vines
Journal:  Nature       Date:  2014-04-03       Impact factor: 49.962

4.  Of Uberfleas and Krakens: Detecting Trade-offs Using Mixed Models.

Authors:  Vincent Careau; Robbie S Wilson
Journal:  Integr Comp Biol       Date:  2017-08-01       Impact factor: 3.326

5.  Invest 5% of research funds in ensuring data are reusable.

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Journal:  Nature       Date:  2020-02       Impact factor: 49.962

Review 6.  Paths towards greater consensus building in experimental biology.

Authors:  Dominique G Roche; Graham D Raby; Tommy Norin; Rasmus Ern; Hanna Scheuffele; Michael Skeeles; Rachael Morgan; Anna H Andreassen; Jeff C Clements; Sarahdghyn Louissaint; Fredrik Jutfelt; Timothy D Clark; Sandra A Binning
Journal:  J Exp Biol       Date:  2022-03-08       Impact factor: 3.312

7.  Data sharing, management, use, and reuse: Practices and perceptions of scientists worldwide.

Authors:  Carol Tenopir; Natalie M Rice; Suzie Allard; Lynn Baird; Josh Borycz; Lisa Christian; Bruce Grant; Robert Olendorf; Robert J Sandusky
Journal:  PLoS One       Date:  2020-03-11       Impact factor: 3.240

8.  Troubleshooting public data archiving: suggestions to increase participation.

Authors:  Dominique G Roche; Robert Lanfear; Sandra A Binning; Tonya M Haff; Lisa E Schwanz; Kristal E Cain; Hanna Kokko; Michael D Jennions; Loeske E B Kruuk
Journal:  PLoS Biol       Date:  2014-01-28       Impact factor: 8.029

9.  The FAIR Guiding Principles for scientific data management and stewardship.

Authors:  Mark D Wilkinson; Michel Dumontier; I Jsbrand Jan Aalbersberg; Gabrielle Appleton; Myles Axton; Arie Baak; Niklas Blomberg; Jan-Willem Boiten; Luiz Bonino da Silva Santos; Philip E Bourne; Jildau Bouwman; Anthony J Brookes; Tim Clark; Mercè Crosas; Ingrid Dillo; Olivier Dumon; Scott Edmunds; Chris T Evelo; Richard Finkers; Alejandra Gonzalez-Beltran; Alasdair J G Gray; Paul Groth; Carole Goble; Jeffrey S Grethe; Jaap Heringa; Peter A C 't Hoen; Rob Hooft; Tobias Kuhn; Ruben Kok; Joost Kok; Scott J Lusher; Maryann E Martone; Albert Mons; Abel L Packer; Bengt Persson; Philippe Rocca-Serra; Marco Roos; Rene van Schaik; Susanna-Assunta Sansone; Erik Schultes; Thierry Sengstag; Ted Slater; George Strawn; Morris A Swertz; Mark Thompson; Johan van der Lei; Erik van Mulligen; Jan Velterop; Andra Waagmeester; Peter Wittenburg; Katherine Wolstencroft; Jun Zhao; Barend Mons
Journal:  Sci Data       Date:  2016-03-15       Impact factor: 6.444

10.  Data availability, reusability, and analytic reproducibility: evaluating the impact of a mandatory open data policy at the journal Cognition.

Authors:  Tom E Hardwicke; Maya B Mathur; Kyle MacDonald; Gustav Nilsonne; George C Banks; Mallory C Kidwell; Alicia Hofelich Mohr; Elizabeth Clayton; Erica J Yoon; Michael Henry Tessler; Richie L Lenne; Sara Altman; Bria Long; Michael C Frank
Journal:  R Soc Open Sci       Date:  2018-08-15       Impact factor: 2.963

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  2 in total

1.  Slow improvement to the archiving quality of open datasets shared by researchers in ecology and evolution.

Authors:  Dominique G Roche; Ilias Berberi; Fares Dhane; Félix Lauzon; Sandrine Soeharjono; Roslyn Dakin; Sandra A Binning
Journal:  Proc Biol Sci       Date:  2022-05-18       Impact factor: 5.530

2.  Data rescue: saving environmental data from extinction.

Authors:  Ellen K Bledsoe; Joseph B Burant; Gracielle T Higino; Dominique G Roche; Sandra A Binning; Kerri Finlay; Jason Pither; Laura S Pollock; Jennifer M Sunday; Diane S Srivastava
Journal:  Proc Biol Sci       Date:  2022-07-20       Impact factor: 5.530

  2 in total

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