Literature DB >> 35258604

Paths towards greater consensus building in experimental biology.

Dominique G Roche1,2, Graham D Raby3, Tommy Norin4, Rasmus Ern5, Hanna Scheuffele6, Michael Skeeles6, Rachael Morgan7,8, Anna H Andreassen5, Jeff C Clements9, Sarahdghyn Louissaint10, Fredrik Jutfelt5, Timothy D Clark6, Sandra A Binning10.   

Abstract

In a recent editorial, the Editors-in-Chief of Journal of Experimental Biology argued that consensus building, data sharing, and better integration across disciplines are needed to address the urgent scientific challenges posed by climate change. We agree and expand on the importance of cross-disciplinary integration and transparency to improve consensus building and advance climate change research in experimental biology. We investigated reproducible research practices in experimental biology through a review of open data and analysis code associated with empirical studies on three debated paradigms and for unrelated studies published in leading journals in comparative physiology and behavioural ecology over the last 10 years. Nineteen per cent of studies on the three paradigms had open data, and 3.2% had open code. Similarly, 12.1% of studies in the journals we examined had open data, and 3.1% had open code. Previous research indicates that only 50% of shared datasets are complete and re-usable, suggesting that fewer than 10% of studies in experimental biology have usable open data. Encouragingly, our results indicate that reproducible research practices are increasing over time, with data sharing rates in some journals reaching 75% in recent years. Rigorous empirical research in experimental biology is key to understanding the mechanisms by which climate change affects organisms, and ultimately promotes evidence-based conservation policy and practice. We argue that a greater adoption of open science practices, with a particular focus on FAIR (Findable, Accessible, Interoperable, Re-usable) data and code, represents a much-needed paradigm shift towards improved transparency, cross-disciplinary integration, and consensus building to maximize the contributions of experimental biologists in addressing the impacts of environmental change on living organisms.
© 2022. Published by The Company of Biologists Ltd.

Entities:  

Keywords:  Behavioural ecology; Comparative physiology; GOLT; OCLTT; Ocean acidification; Open data; Transdisciplinary; Transparency

Mesh:

Year:  2022        PMID: 35258604     DOI: 10.1242/jeb.243559

Source DB:  PubMed          Journal:  J Exp Biol        ISSN: 0022-0949            Impact factor:   3.312


  3 in total

1.  Slow improvement to the archiving quality of open datasets shared by researchers in ecology and evolution.

Authors:  Dominique G Roche; Ilias Berberi; Fares Dhane; Félix Lauzon; Sandrine Soeharjono; Roslyn Dakin; Sandra A Binning
Journal:  Proc Biol Sci       Date:  2022-05-18       Impact factor: 5.530

2.  Data rescue: saving environmental data from extinction.

Authors:  Ellen K Bledsoe; Joseph B Burant; Gracielle T Higino; Dominique G Roche; Sandra A Binning; Kerri Finlay; Jason Pither; Laura S Pollock; Jennifer M Sunday; Diane S Srivastava
Journal:  Proc Biol Sci       Date:  2022-07-20       Impact factor: 5.530

3.  Elevating the impact of conservation physiology by building a community devoted to excellence, transparency, ethics, integrity and mutual respect.

Authors:  Steven J Cooke; Kevin R Hultine; Jodie L Rummer; Nann A Fangue; Frank Seebacher; Erika J Eliason; Heath A MacMillan; Andrea Fuller; Craig E Franklin
Journal:  Conserv Physiol       Date:  2022-04-01       Impact factor: 3.252

  3 in total

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