Literature DB >> 35572769

Mechanistic Studies on the Synthesis of Pyrrolidines and Piperidines via Copper-Catalyzed Intramolecular C-H Amination.

José María Muñoz-Molina1, Daniel Bafaluy2, Ignacio Funes-Ardoiz2, Adiran de Aguirre2, Feliu Maseras2,3, Tomás R Belderrain1, Pedro J Pérez1, Kilian Muñiz2.   

Abstract

We have recently developed a method for the synthesis of pyrrolidines and piperidines via intramolecular C-H amination of N-fluoride amides using [Tp x CuL] complexes as precatalysts [Tp x = tris(pyrazolyl)borate ligand and L = THF or CH3CN]. Herein, we report mechanistic studies on this transformation, which includes the isolation and structural characterization of a fluorinated copper(II) complex, [(TpiPr2OH)CuF] [TpiPr = hydrotris(3,5-diisopropylpyrazolyl)borate], pertinent to the mechanistic pathway. The effects of the nature of the Tp x ligand in the copper catalyst as well as of the halide in the N-X amides employed as reactants have been investigated both from experimental and computational perspectives.
© 2022 The Authors. Published by American Chemical Society.

Entities:  

Year:  2022        PMID: 35572769      PMCID: PMC9092462          DOI: 10.1021/acs.organomet.2c00095

Source DB:  PubMed          Journal:  Organometallics        ISSN: 0276-7333            Impact factor:   3.837


Introduction

Amination reactions have become powerful methods to synthesize natural, organic, and medicinally important compounds. In this context, the direct amination of C(sp3)–H bonds constitutes one of the most attractive routes to prepare C(sp3)–N bonds, providing chemo-, regio-, and stereoselectivity.[1] Transition metals can catalyze innovative C–H amination processes, and among them, the first row d-block elements have become an alternative to precious late transition metals, allowing the exploration of unprecedented catalytic transformations.[1] Particularly, copper complexes exhibit unique and versatile reactivity with good functional group tolerance toward that end.[2] Several C(sp3)–H bond amination processes catalyzed by copper have been described to date (Scheme );[2a] the proposed mechanisms usually involve oxidation states of copper complexes from Cu(I) to Cu(III), either in two-electron or single-electron processes or even with both steps in the same catalytic cycle. Although the state-of-the-art of these systems is dominated by nitrene chemistry, over the last two decades, a number of radical-based functionalization systems have been successfully developed: (i) amidation of allylic and benzylic C–H bonds with sulfonamides using tert-butyl peracetate (BuOOAc) or tert-butyl perbenzoate (BuOOBz) as oxidants;[3] (ii) amidation of inactivated C(sp3)–H bonds adjacent to a nitrogen atom using tert-butyl hydroperoxide (BuOOH) as the oxidant;[4] (iii) α-amination of esters using di-tert-butyldiaziridinone;[5] (iv) amidation of alkanes, including light alkanes, with di-tertbutylperoxide and amides;[6] (v) intermolecular C–H amination via the generation of highly reactive radical species from Selectfluor;[7] and (vi) benzylic C–H bond amination using N-fluorobenzenesulfonimide (NFSI).[8] Some of the proposed mechanisms for these systems still remain unclear as is the case of the latter process. Itami and Musaev showed that the reaction between NFSI and bipyridine-supported CuBr is more complicated than a simple bimolecular one- or two-electron oxidative addition.[9]
Scheme 1

Copper-Catalyzed C–H Amination Processes

We have recently communicated[10] a method for the synthesis of both pyrrolidines and piperidines via intramolecular C–H amination of N-fluoride amides (eq ) using complex [TpiPr2Cu(NCMe)] as a well-defined precatalyst [TpiPr = hydrotris(3,5-diisopropyl-1-pyrazolyl)borate]. At variance with other previous methods for catalytic copper activation of N–F bonds in C–H functionalization, which addressed C–C bond formation, this system induces the corresponding amination. Moreover, the application to the synthesis of piperidines is also noteworthy since most reported systems only provide pyrrolidines. A catalytic cycle through a Cu(I)/Cu(II) pathway was proposed on the basis of experimental and density functional theory (DFT) investigations. Herein, we present a complementary mechanistic study including the influence of the nature of the Tp ligand in the reaction outcome, the isolation of relevant fluorinated copper intermediates, and the effect of the halide in the reactant, among other variables, to complete the previously proposed mechanistic picture.

Results and Discussion

Copper Fluoride Intermediates

We started these investigations considering the possible participation of [TpCuIIF] species in the catalytic cycle responsible for the transformation shown in eq . Our previous work[10] demonstrated that the electron paramagnetic resonance spectra of a mixture of 1a (Scheme ) and [TpiPr2Cu(NCMe)] (2) showed the formation of a new copper(II) species, presumably as the result of the homolytic cleavage of the N–F bond. Unfortunately, efforts to isolate any copper complex from this reaction mixture were unsuccessful.
Scheme 2

Observation of Cu–F-Containing Complexes

At variance with this, when the reaction mixture was exposed to air, crystalline material of a new complex was obtained, being structurally characterized as [(TpiPr2-OH)CuF] (3, Scheme ).[11] This compound results from the aerobic oxidation of the tertiary C–H bond of one iPr group at the trispyrazolylborate ligand. A recent work from one of our laboratories has disclosed a similar oxidation reaction of a C(sp3)–H bond of a different Tp ligand, leading to trinuclear complexes.[12a] Complex 3 has been independently synthetized from the direct reaction of TpiPr2Cu(NCMe) and NFSI. Mass spectroscopy studies carried out with the latter reaction mixture showed the presence of a species of composition [TpiPr2CuF(NCMe)] as a probable intermediate en route to complex 3. We interpret these results as an indication of the generation of a Cu(II)–F bond from the interaction of the initial Cu(I) complex and the fluorinated substrate. Isolated complex 3 was tested as a catalyst for the cyclization reaction using 1a as the substrate, showing a catalytic activity similar to that of other Cu(II) catalyst precursors described in our previous work but lower than that achieved with the parent TpiPr2Cu(NCMe) catalyst. Moreover, kinetic studies also showed that the reaction rates with the latter are faster than that with complex 3 (see the Supporting Information); therefore, this is not an intermediate in the transformation studied. Complex 3 has been structurally characterized by X-ray diffraction studies. The geometry around the copper center is trigonal bipyramidal (Scheme , inset), with a Cu–O distance of 2.086 Å, which is slightly larger than those reported for similar oxidation processes, affording trinuclear compounds [1.919 Å for TpMs2(O2)3Cu3[12a] or 2.001 Å for Cu3(Br)(L1O)3(PF6)2)],[12b] where the oxygen is bonded to two copper ions. The Cu–N distances are within the 1.90–2.13 Å interval, being similar to that of other Cu(II)-containing Tp ligands.[12a]

Kinetic Isotope Effect Experiments

The use of deuterium-labeled substrates has provided valuable information. We had previously obtained the individual reaction rates for N-fluoro-sulfonamides 1b and 1b–d2 with a fully deuterated benzylic position, showing a kinetic isotope effect (KIE) value of 1.7, consistent with the C–H bond cleavage as the turnover-limiting step. We have now obtained additional information from equations 2 and 3. Thus, when the monodeuterated N-fluoro-sulfonamide 1b–d1 was employed, a primary KIE kH/kD = 3.3 was measured in a direct competition experiment (eq ) using the TpiPr2-containing catalyst. A similar experiment leading to piperidine formation via six-membered cyclization gave a kH/kD value of 4.2 (see the Supporting Information). Furthermore, the corresponding intermolecular competition reaction between 1b and 1b–d2 was also carried out and gave a kH/kD value of 1.4 (eq ). The related experiment performed with starting materials leading to piperidine products provided the same kH/kD value of 1.4 (see the Supporting Information). These KIE values support, with no doubt, the C–H bond cleavage as the turnover-limiting step.[13]

Effect of the Tp Ligand

The availability of an array of R groups that can be installed in the pyrazolyl rings of Tp ligands allows the control of the steric and electronic properties of the metal complex. In our previous report, we observed a subtle steric influence of the ligand in the diastereoselectivity of product 4c (eq ). As a possible explanation for this behavior, we speculate that the steric hindrance exerted by the complex in the transition state of the cyclization step is not enough to greatly impact the reaction outcome. The effect of the ligand has now been expanded to the reaction yields. As shown in Table , when substrate 1a was submitted to the catalytic conditions in the presence of copper catalysts containing four different Tp ligands, a variable amount of product 4a was obtained. Some relevant information can be obtained from these experiments. There seems to be a correlation between the values of the ν(CO) frequencies in complexes TpCu(CO) and the catalytic effectivity observed,[14] although this issue will be further analyzed through DFT calculations.
Table 1

Copper-Catalyzed Intramolecular C–H Amination and Values for ν(CO) (cm–1) for [TpCu(CO)]a

entryTpxyield 4a [%]bν(CO) (cm–1)
1TpBr3602110
2Tp*,Br742073
3Tp*992060
4TpiPr2992056

See the Supporting Information for full details. 0.1 mmol 1a was employed.

Yields were determined via1H NMR analysis versus diphenylmethane as the internal standard.

See the Supporting Information for full details. 0.1 mmol 1a was employed. Yields were determined via1H NMR analysis versus diphenylmethane as the internal standard. To shed light on the effect of the Tp ligand in this process, we further examined the dependence of the catalyst efficiency on the nature of the substituents at the Tp ligand through a series of DFT calculations. We used the B3LYP-D3 functional with a valence triple-ζ plus polarization and a diffusion basis set for calculations in a continuum toluene solvent. All energies supplied below correspond to free energies, and full computational details are supplied in the Supporting Information. We chose TpBr3 and Tp* as representative examples for the different behaviors (Table ) and computed the free energy profiles for each of them. Figure presents the free energy profile for the reaction between the complex containing TpBr3 and 1b as the substrate (as a simplified model of 1a). The role of the ligand is apparent in Figure , specifically in the early part of the reaction. The corresponding profile for Tp* was already reported in our previous work.[10] The profiles for the two systems are qualitatively similar and result in intermediates c2 or c2, where the N–F bond has been broken, and the spin state has changed from singlet to triplet, with the unpaired electrons on nitrogen and on copper, which thus becomes Cu(II). The highest energy point in this path is a minimum energy crossing point (MECP, where the transition from the singlet to the triplet spin state takes place). The need for a spin crossing in this cleavage deserves some comment. The N–F cleavage in a singlet spin state was found to proceed viaTSc1-c2, as shown in Figure , and has a higher energy. The N–F cleavage in a triplet spin state is not feasible because the vertical excitation of c1 from singlet to triplet would be too costly. An additional alternative would be this step proceeding through an open-shell singlet state. The open-shell singlet energy of intermediate c2 should certainly be very similar to that of the triplet as there is a little overlap between the two open-shell orbitals. However, the open-shell singlet in c1 would be unlikely to converge as it would involve moving an electron from the σ orbital to the σ* orbital of the N–F bond. This highly asymmetric situation would complicate enormously the location of a transition state, and even if it were possible, it would not be very different in the structure/energy from the reported MECP.
Figure 1

Free energy profile of the reaction with 1b as the substrate and [TpBr3Cu(NCMe)] as the catalyst. Energies are given in kilocalories per mole.

Free energy profile of the reaction with 1b as the substrate and [TpBr3Cu(NCMe)] as the catalyst. Energies are given in kilocalories per mole. The free energy profiles of the N–F cleavage step for TpBr3 and Tp* are qualitatively similar, but they differ significantly on the energy of the key MECP. The resulting barrier for the TpBr3Cu system is 22.5 kcal/mol above reactants through MECPc1-c2 (Figure ). This is more than 10 kcal/mol above the value for the Tp*Cu system, which was 11.3 kcal/mol. Although a barrier of 22.5 kcal/mol is still affordable in the experimental conditions, it is close to the limit. In addition, it is worth taking into account that the spin transition may be further hindered by a low transition moment.[15] The origin of the difference between the two systems can be further analyzed by comparing the geometries of the key MECPs, as shown in Figure . The origin of the difference seems to be steric rather than electronic. It is clear that in the higher energy TpBr3 system, the fluorine atom is closer to both the nitrogen and copper centers. We consider that in the Tp* system, there is stabilization of the fluorine center due to the presence of favorable dispersion interactions with the methyl substituents in the tris(pyrazolyl)borate ligand, which in this way furnishes a stabilizing pocket for the atom coming into the copper coordination sphere. Such interactions are absent when the methyl groups are replaced by bromine substituents.
Figure 2

Highest energy point associated to the N–F cleavage for the TpBr3Cu system (left) and the Tp*Cu system (right). Selected distances are given in angstrom.

Highest energy point associated to the N–F cleavage for the TpBr3Cu system (left) and the Tp*Cu system (right). Selected distances are given in angstrom.

Potential Reaction Pathways

In order to explore the final cyclization step in more detail, additional pathways were explored. As shown in Scheme , these may include a fluorine atom transfer from copper to the benzylic position, which formally reduces copper back to the initial oxidation state +I. Such a shift could involve a benzylic fluoride intermediate (5), which could also be formed from an intramolecular single-electron transfer (SET) between the copper(II) center in c4 and the benzylic radical through a cationic benzylic intermediate. The formation of the cyclic product could be accessible from such a cation or the [CuI]-5 couple. The involvement of the benzylic cation proposed in Scheme could not be substantiated via theoretical calculations. In fact, the reductive pathway from c4 is energetically straightforward.
Scheme 3

Potential Pathways for C–N Bond Formation from c4

To explore the reactivity of the putative fluorinated intermediate 5, we have synthesized it individually[16] and exposed it to the copper catalyst under catalytic conditions (Scheme ). While no reaction was observed at 25 °C, heating at 90 °C led to the conversion of 5 into 4b, apparently supporting the former as an intermediate in the reaction mechanism. However, monitoring of appearance of 4b in two twin experiments employing 1a and 5 showed a completely distinct profile (Scheme ). Thus, the conversion of 1a into 4a takes place in a smooth manner, whereas the use of 5 as the reactant requires a substantial induction period (Scheme ). We hypothesize that this period may correspond to a slow process until a sufficient concentration of HF is reached. Importantly, the same performance was observed by employing 5 as a starting material but by adding Brönsted (HF) or Lewis (BF3) acids instead of the copper catalyst (see the Supporting Information). At variance with this, 1a does not react with such Lewis acids en route to 4a. The cleavage of the N–F and C–H bonds involved in the conversion from 1a to 4a occurs through a quite specific mechanism dependent on the presence of the copper catalyst, which cannot be replaced in this context by a Lewis acid. This distinct behavior demonstrates that 5 is not an intermediate in the catalytic formation of pyrrolidines from the N–F reactants. Therefore, the conversion of c4 into c5 takes place through a SET step, followed by ring closing and F–H formation (Scheme , blue path).
Scheme 4

Kinetic Experiments with 1a and 5 as Reactants

Effect of the Halide Group

We also wondered about the effect that the halide group might exert in the catalytic process. Toward this end, N-chlorinated compound 6 was prepared and submitted to catalytic conditions under the same conditions as those employed with the N–F reagent (Table , entry 4). The formation of pyrrolidine 4a (Scheme ) took place in 83% yield (determined using NMR), a lower value compared with the 99% yield for 4a. Interestingly, NMR monitoring of the mixture of 6 with the copper catalyst at room temperature for 1.5 h showed the complete conversion into 7, which further evolves to 4a and other byproducts upon heating. It cannot be ruled out at this stage that 7 is formed via a copper-initiated radical chain reaction[17] or through thermal Hofmann–Löffler pathways.
Scheme 5

Reactivity of N–Cl and C–Cl Compounds 6 and 7

In contrast with the above reactivity of 6, essentially no reaction was observed at 25 °C in the case of a mixture of 1a with the copper catalyst since heating at 90 °C in toluene-d8 is needed to afford a clean and complete conversion into 4a (Scheme ). Therefore, experimental data assess N–F compounds as the optimum halogenated starting materials for the present C–H amination reaction under copper catalysis. The chlorine-based reaction was also examined from a computational point of view with the same method described above. The key difference in this case is associated to the evolution of intermediate c2, where the N–X bond has already been broken, and the spins are localized in the copper and nitrogen centers. Results for the N–F system have been presented in Figure and those for N–Cl are shown in Figure . The free energy profiles for both processes present significant qualitative differences. We want to remark that the path for the fluorine system is not viable for the chlorine system as it was the starting point for our calculations. In the chlorine system, intermediate c2-Cl evolves through the loss of a chlorine radical, which then abstracts a hydrogen from the organic chain, resulting in intermediate c7-Cl. The highest point in this path TS c6-c7-Cl has a barrier 22.9 kcal/mol above that of c2-Cl, much higher than those observed for the N–F systems. There may be alternative paths from c6-Cl, but as the reported one in Figure has a TS only 2.2 kcal/mol above this intermediate, we did not consider them. We computed a similar mechanism for the fluorine system, but the barrier was extremely high, with c6 being 45.4 kcal/mol above c2. The much lower stability of the fluorine radical therefore plays a critical role in the compared reactivity of the systems and confirms the unique features of the systems containing the N–F bond.
Figure 3

Free energy profile of the C–H activation leading to product Int-Cl ([Cu] = Tp*Cu).

Free energy profile of the C–H activation leading to product Int-Cl ([Cu] = Tp*Cu).

Conclusions

Mechanistic studies, both experimental and DFT calculations, on the TpCu(I)-catalyzed intramolecular C–H amination using N-fluoro and N-chloro amides have been performed, adding information to previous contributions. The use of fluoride-containing substrates instead of N–Cl ones is largely preferred due to more favorable reaction pathways. Also, the alkyl substituents in the Tp ligand in the [TpCuL] precatalyst induce better conversions, a fact that could be related with an easier Cu(I) to Cu(II) oxidation reaction during the reaction pathway. Evidence for the intermediacy of Cu–F bond formation has been collected. The knowledge obtained from these studies sheds light to the design of a new, more active catalyst for these transformations.
  30 in total

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Review 5.  Metal-catalyzed oxidations of C-H to C-N bonds.

Authors:  David N Zalatan; J Du Bois
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6.  Chemistry. Copper's contribution to amination catalysis.

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Review 7.  Catalytic C-H functionalization by metalloporphyrins: recent developments and future directions.

Authors:  Hongjian Lu; X Peter Zhang
Journal:  Chem Soc Rev       Date:  2010-11-19       Impact factor: 54.564

8.  Copper-Catalyzed N-F Bond Activation for Uniform Intramolecular C-H Amination Yielding Pyrrolidines and Piperidines.

Authors:  Daniel Bafaluy; José María Muñoz-Molina; Ignacio Funes-Ardoiz; Sebastian Herold; Adiran J de Aguirre; Hongwei Zhang; Feliu Maseras; Tomás R Belderrain; Pedro J Pérez; Kilian Muñiz
Journal:  Angew Chem Int Ed Engl       Date:  2019-05-20       Impact factor: 15.336

9.  Copper-catalyzed intermolecular amidation and imidation of unactivated alkanes.

Authors:  Ba L Tran; Bijie Li; Matthias Driess; John F Hartwig
Journal:  J Am Chem Soc       Date:  2014-01-30       Impact factor: 15.419

10.  Copper-Catalyzed Dehydrogenative Amidation of Light Alkanes.

Authors:  M Ángeles Fuentes; Riccardo Gava; Noam I Saper; Erik A Romero; Ana Caballero; John F Hartwig; Pedro J Pérez
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