| Literature DB >> 35571611 |
Wei-Cheng Chang1,2, Cho-Hao Lee3, Shih-Hwa Chiou4,5,6,7, Chen-Chung Liao8, Chao-Wen Cheng1,9,10.
Abstract
Idiopathic epiretinal membrane (iERM) is a pathological fibrocellular change in the vitreoretinal junction over the macular area; however, possible pathogenic mechanisms remain unclear. Changes in the differential protein composition of the aqueous humor (AH) may represent potential molecular changes associated with iERM. To gain new insights into the molecular mechanisms of iERM pathology, a sensitive label-free proteomics analysis was performed to compare AH protein expressions in patients with cataracts with or without iERM. This study employed nanoflow ultra-high-performance liquid chromatography-tandem mass spectrometry to investigate protein compositions of the AH obtained from individual human cataract eyes from 10 patients with iERM and 10 age-matched controls without iERM. Eight proteins were differentially expressed between the iERM and control samples, among which six proteins were upregulated and two were downregulated. A gene ontology (GO) analysis revealed that iERM was closely associated with several biological processes, such as immunity interactions, cell proliferation, and extracellular matrix remodeling. Additionally, multiple proteins, including lumican, cyclin-dependent kinase 13, and collagen alpha-3(VI) chain, were correlated with the central retinal thickness, indicating a multifactorial response in the pathogenic process of iERM. Changes in the AH level of lumican between iERM and control samples were also confirmed by an enzyme-linked immunosorbent assay. In conclusion, several pathological pathways involved in iERM were identified in the AH by a proteomic analysis, including immune reactions, cell proliferation, and remodeling of the extracellular matrix. Lumican is a potential aqueous biomarker for predicting iERM development and monitoring its progression. More clinical parameters also need to be identified to complete the analysis, and those could provide additional targets for treating and preventing iERM.Entities:
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Year: 2022 PMID: 35571611 PMCID: PMC9106516 DOI: 10.1155/2022/9886846
Source DB: PubMed Journal: Dis Markers ISSN: 0278-0240 Impact factor: 3.464
Figure 1Optical coherence tomography (OCT) of (a) a healthy retina and (b) an idiopathic epiretinal membrane (ERM; iERM). The cross-sectional B-scan was obtained with a spectral-domain OCT device in (a) a healthy eye and (b) an eye with iERM. (b) shows the retina of an eye with an ERM.
Samples for the proteomic analysis.
| Variable | Control group | ERM group |
|
|---|---|---|---|
| ERM | 254.20 ± 12.97 | 319.50 ± 65.70 | 0.004# |
| Gender | 0.007 | ||
| Female | 8 (80.0%) | 2 (20.0%) | |
| Male | 2 (20.0%) | 8 (80.0%) | |
| Age | 73.90 ± 5.72 | 74.00 ± 5.23 | 0.675# |
| VA | 0.42 ± 0.10 | 0.29 ± 0.20 | 0.128# |
| LogMAR | 0.39 ± 0.11 | 0.79 ± 0.67 | 0.128# |
| AXL | 23.83 ± 1.17 | 24.26 ± 2.01 | 0.631# |
| Protein concentration | 0.22 ± 0.06 | 0.36 ± 0.16 | 0.029# |
| Side | 1.000# | ||
| Left | 4 (40.0%) | 5 (50.0%) | |
| Right | 6 (60.0%) | 5 (50.0%) |
#Analyzed by Fisher's exact test. ∗Data are expressed as the mean ± standard deviation. ERM: epiretinal membrane; VA: visual acuity; MAR: minimal angle of resolution; AXL: axial length.
Pathway analysis of aqueous humor (AH) proteins using Ingenuity Pathway Analysis tools.
| Canonical pathway | Overlapping proteins in the iERM and control groups |
|---|---|
| Interleukin-15 signaling | 3 |
| B-cell receptor signaling | 3 |
| Systemic lupus erythematosus in B-cell signaling pathway | 3 |
| Communication between innate and adaptive immune cells | 3 |
| Complement system | 1 |
Statistically significantly regulated proteins in patients with epiretinal membrane (ERM) versus controls in a proteomics analysis.
| Protein ID | Protein name | Gene name | ERM group | Control group |
| Multiple of change ERM/control |
|---|---|---|---|---|---|---|
| P51884 | Lumican | LUM | 2.51 ± 1.19 | 1.47 ± 0.84 | 0.023# | 1.70748299 |
| P05543 | Thyroxine-binding globulin | THBG | 1.10 ± 0.57 | 0.39 ± 0.50 | 0.004# | 2.82051282 |
| A0A0J9 | Immunoglobulin heavy variable 5-10-1 | HV5X1 | 0.11 ± 0.34 | 1.05 ± 1.23 | 0.027# | 0.1047619 |
| P17050 | Alpha-N-acetylgalactosaminidase | NAGAB | 0.00 ± 0.00 | 0.38 ± 0.48 | 0.031# | NA |
| P78563 | Double-stranded RNA-specific editase 1 | RED1 | 0.39 ± 0.51 | 0.00 ± 0.00 | 0.031# | NA |
| Q14004 | Cyclin-dependent kinase 13 | CDK13 | 0.41 ± 0.53 | 0.00 ± 0.00 | 0.031# | NA |
| P12111 | Collagen alpha-3(VI) chain | CO6A3 | 0.70 ± 0.48 | 0.20 ± 0.42 | 0.039# | 3.5 |
| Q7Z7A3 | Cytoplasmic tRNA 2-thiolation protein 1 | Q7Z7A3 | 0.52 ± 0.54 | 0.10 ± 0.32 | 0.045# | 5.2 |
#Tested by Fisher's exact test.
Correlations between proteomics data and the central retinal thickness.
| Protein ID | Protein name | Gene name | Correlation, |
|
|---|---|---|---|---|
| P51884 | Lumican# |
| 0.65573455 | 0.002 |
| P01042 | Kininogen-1 |
| 0.50337911 | 0.024 |
| P05543 | Thyroxine-binding globulin# |
| 0.38883989 | 0.049 |
| Q86YZ3 | Hornerin |
| 0.5426932 | 0.013 |
| Q02487 | Desmocollin-2 |
| 0.54640969 | 0.013 |
| P61769 | Beta-2-microglobulin |
| 0.48090844 | 0.032 |
| P12111 | Collagen alpha-3(VI) chain# |
| 0.12831005 | 0.032 |
| Q6UX71 | Plexin domain-containing protein 2 |
| 0.52355015 | 0.018 |
| Q14574 | Desmocollin-3 |
| 0.46152818 | 0.041 |
| P29622 | Kallistatin |
| 0.55527954 | 0.011 |
| O43827 | Angiopoietin-related protein 7 |
| 0.48941527 | 0.029 |
| Q9BY67 | Cell adhesion molecule 1 |
| 0.47306149 | 0.035 |
| Q14004 | Cyclin-dependent kinase 13# |
| 0.59142594 | 0.006 |
| O75592 | E3 ubiquitin-protein ligase MYCBP2 |
| 0.44938655 | 0.047 |
| Q9UBP4 | Dickkopf-related protein 3 |
| 0.78550025 | 0.001 |
| Q96JP9 | Cadherin-related family member 1 |
| 0.6932842 | 0.001 |
| O95274 | Ly6/PLAUR domain-containing protein 3 |
| 0.78550025 | 0.0001 |
Tested by Pearson's correlation coefficients. #Proteins statistically significantly differentially regulated in epiretinal membrane patients.
Figure 2Heat map generated from an R software analysis with the average relative intensity reference. Numbers E1~E10 represent patients with idiopathic epiretinal membrane (iERM), and C1~C10 represent controls. They rank in numbers with the central retinal thickness (CRT) from thick to thin.
Figure 3Lumican peptide matching sequences.
Figure 4Correlations between aqueous proteins and the central retinal thickness (CRT). Vertical values represent the CRT (μm) measured by OCT. Horizontal values denote the contents of the proteins measured by mass spectrometry (spectral count (SpC)). Correlations were calculated as Pearson's correlation coefficients (r). Proteins were significantly positively correlated with the CRT (a–d).
Figure 5ELISA analysis revealed significant concentration changes between the idiopathic epiretinal membrane (iERM) and control groups. Vertical values denote the concentration of lumican (μg/mL). The average concentration of lumican was significantly elevated in patients with iERM (4.172 μg/mL) compared to the control group (2.006 μg/mL) (p = 0.0058).