| Literature DB >> 35563085 |
Seiichiro Katagiri1, SungGi Chi2, Yosuke Minami2, Kentaro Fukushima3, Hirohiko Shibayama3, Naoko Hosono4, Takahiro Yamauchi4, Takanobu Morishita5, Takeshi Kondo6, Masamitsu Yanada7, Kazuhito Yamamoto7, Junya Kuroda8, Kensuke Usuki9, Daigo Akahane1, Akihiko Gotoh1.
Abstract
KIT is a type-III receptor tyrosine kinase that contributes to cell signaling in various cells. Since KIT is activated by overexpression or mutation and plays an important role in the development of some cancers, such as gastrointestinal stromal tumors and mast cell disease, molecular therapies targeting KIT mutations are being developed. In acute myeloid leukemia (AML), genome profiling via next-generation sequencing has shown that several genes that are mutated in patients with AML impact patients' prognosis. Moreover, it was suggested that precision-medicine-based treatment using genomic data will improve treatment outcomes for AML patients. This paper presents (1) previous studies regarding the role of KIT mutations in AML, (2) the data in AML with KIT mutations from the HM-SCREEN-Japan-01 study, a genome profiling study for patients newly diagnosed with AML who are unsuitable for the standard first-line treatment (unfit) or have relapsed/refractory AML, and (3) new therapies targeting KIT mutations, such as tyrosine kinase inhibitors and heat shock protein 90 inhibitors. In this era when genome profiling via next-generation sequencing is becoming more common, KIT mutations are attractive novel molecular targets in AML.Entities:
Keywords: HSP90 inhibitor; KIT mutation; RUNX1-RUNX1T1; acute myeloid leukemia; genome profiling
Mesh:
Substances:
Year: 2022 PMID: 35563085 PMCID: PMC9103326 DOI: 10.3390/ijms23094694
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 6.208
Figure 1(A) Schematic representation of the structure of KIT. (B) The homodimeric state of KIT brought about by SCF binding and stabilized by interactions between immunoglobulin-like domains. (C) Signaling pathways involving KIT. The MAPK pathway, JAK/STAT pathway, P13K pathway, and Src family kinase pathway are shown as orange, yellow, green, and blue lines, respectively.
Summary of KIT mutations in cancers.
| Site | Exon | Disease | Description |
|---|---|---|---|
| Immunoglobulin-like domain | 8 | AML | T417, Y418, D419 |
| 9 | GIST | A502 | |
| Mastocytosis | K5091 | ||
| Trans-membrane domain | 10 | AML | V530I |
| Mastocytosis | F522C, A533D | ||
| Juxta-membrane domain | 11 | AML | V560, V559, ITD |
| GIST | CD117, V559A, V559D, W557R, V560G | ||
| Melanoma | L576P | ||
| Mastocytosis | V560G | ||
| 13 | AML | K642E | |
| Melanoma | K642E | ||
| 14 | GIST | K704, N705 | |
| Kinase insert | 15 | GIST | S715 |
| Kinase domain | 16 | AML | 1748T, L773S |
| 17 | AML | D816V, D816Y, D816F, D816H, N822, V8251 | |
| Germ cell tumor | D816H, D816V | ||
| Mastocytosis | D816V, D816Y, D816H, D820G | ||
| ENKL | V825A, D816N |
Abbreviations: AML: acute myeloid leukemia, GIST: gastrointestinal stromal tumor, ENKL: extranodal NK/T cell lymphoma.
Summary of KIT mutations in AML.
| Exon | Description | Functional Impact |
|---|---|---|
| 8 | T417, Y418, D419 | Hyper-reactivity to stem cell factor |
| 10–11 | V530, V540, W557, V559, L576, ITD | Spontaneous dimer formation |
| 17 | D816, D820, N822, Y823, V825 | Auto activation |
Abbreviations: AML: acute myeloid leukemia.
Figure 2Venn diagram for frequency of KIT mutations and CBF leukemia in HM-SCREEN-Japan-01 [53,54,55]. Red, blue, and green circles indicate the number of patients with AML who harbored KIT mutation, CBFβ-MYH11, and RUNX1-RUNX1T1, respectively. Fifteen had the KIT mutation, eight of whom had RUNX1-RUNX1T1 and two had CBFβ-MYH11.
Frequency of KIT mutations in CBF-AML.
| Author, Year | Disease Status | Frequency of | ||
|---|---|---|---|---|
| CBF Leukemia | ||||
| Qin 2014 | Newly diagnosed | 37% (128/351) | 39% (99/253) | 30% (29/98) |
| Allen 2013 | Newly diagnosed | 28% (100/354) | 23% (46/199) | 35% (54/155) |
| Kim 2013 | Newly diagnosed | 26% (32/121) | 27% (22/82) | 35% (54/155) |
| Ishikawa 2019 | Newly diagnosed | 34% (63/199) | 32% (42/132) | 31% (21/67) |
| HM-SCREEN01 | R/R or Unfit | 59% (10/17) | 67% (8/12) | 40% (2/5) |
Abbreviations: CBF: core-binding factor, R/R: relapse/refractory.
Figure 3(A) Details of KIT mutation locations detected in HM-SCREEN-Japan-01 [53,54,55]. A total of 17 KIT mutations were detected in 15 cases. (B) Mutational data of the 15 patients with KIT mutations.
Summary of KIT mutations and chromosomal karyotypes.
| ID | Category | Description | SNV | VAF | Other Mutations | Chromosomal Karyotype |
|---|---|---|---|---|---|---|
| 13 | Unfit | D816V | 2447A > T | 0.372 | FLT3, KRAS, CEBPA, TP53 | Complex karyotype |
| 50 | Unfit | D816V | 2447A > T | 0.123 | RAD21, SPEN | t(8;21)(q22;q22.1) |
| 56 | Unfit | D816F | 2446_2447GA > TT | 0.37 | TP53, CDKN2A, CDKN2B | Complex karyotype |
| 149 | Unfit | D816V | 2447A > T | 0.344 | ASXL1, DNMT3A, SETBP1, FANCD2, CASP8 | 46, XY, t(3;3)(p25:q13) |
| 158 | Unfit | T417_D419 > Y | 1249_1255ACTTACG > T | 0.078 | FLT3, NRAS | inv(16)/t(16;16) |
| 160 | Unfit | D816V | 2447A > T | 0.146 | CSF3R, JAK1 | t(8;21)(q22;q22.1) |
| N822K | 2466T > G | 0.018 | ||||
| 10 | R/R | D816V | 2447A > T | 0.234 | None | t(8;21)(q22;q22.1) |
| 39 | R/R | D816V | 2447A > T | 0.252 | RAD21 | t(8;21)(q22;q22.1) |
| D816Y | 2446G > T | 0.056 | ||||
| 45 | R/R | D816Y | 2446G > T | 0.923 | CD36 | t(8;21)(q22;q22.1) |
| 76 | R/R | D816V | 2447A > T | 0.932 | NF1 | t(8;21)(q22;q22.1) |
| 94 | R/R | D816V | 2447A > T | 0.459 | RAD21, NPM1 | Normal |
| 111 | R/R | D816V | 2447A > T | 0.338 | SETD2 | 3q Abnormality |
| 121 | R/R | D816Y | 2446G > T | 0.021 | CBL | inv(16)/t(16;16) |
| 146 | R/R | D816V | 2447A > T | 0.082 | GATA2, HIST1H2BJ | t(8;21)(q22;q22.1) |
| 175 | R/R | N822K | 2466T > G | 0.461 | GATA2, PHF6, ATM | t(8;21)(q22;q22.1) |
Abbreviations: R/R: relapse/refractory, SNV: single-nucleotide variant, VAF: variant allele frequency.
Summary of FDA-approved KIT-targeted therapies.
| Drug | Primary Targets | FDA-Approved Disease |
|---|---|---|
| Imatinib | BCR-ABL1 | CML, Ph+ALL, HES, GIST, SM, DFSP |
| Dasatinib | BCR-ABL1 | CML, PhALL |
| Sunitinib | VEGFR and FLT3 | GIST, RCC, Pancreatic Cancer |
| Regorafenib | VEGFR | GIST, HCC, Colorectal Cancer |
| Midostaurin | FLT3 | AML (FLT3 mutation), SM |
| Ripretinib | KIT | GIST |
| Avapritinib | KIT/PDGFRA | GIST, SM |
Abbreviations: FDA: US Food and Drug Administration, CML: chronic myeloid leukemia, PhALL: Philadelphia-positive acute lymphoblastic leukemia, HES: chronic eosinophilic leukemia with PDGFRα rearrangement, GIST: gastrointestinal stromal tumor, SM: systemic mastocytosis, DFSP: dermatofibrosarcoma protuberans, RCC: renal cell carcinoma, HCC: hepatocellular carcinoma.
Figure 4HSP90 inhibitor treatment for leukemia (such as FLT3). By binding of the HsP90 inhibitor to the ATP/ADP pocket of Hsp90, the equilibrium state of Hsp90 becomes ADP dominant. This inhibits the function of chaperone complexes containing client proteins and promotes the degradation of client proteins.