| Literature DB >> 35547118 |
Zhan-Bo Liu1, Ying-Da Wu1,2, Heng Zhao1, Ya-Ping Lian1, Ya-Rong Wang1, Chao-Ge Wang1, Wei-Lin Mao1, Yuan Yuan1.
Abstract
Phylogenetic analyses inferred from the nuc rDNA ITS1-5.8S-ITS2 (ITS) data set and the combined 2-locus data set [5.8S + nuc 28S rDNA (nLSU)] of taxa of Trechisporales around the world show that Sistotremastrum family forms a monophyletic lineage within Trechisporales. Bayesian evolutionary and divergence time analyses on two data sets of 5.8S and nLSU sequences indicate an ancient divergence of Sistotremastrum family from Hydnodontaceae during the Triassic period (224.25 Mya). Sistotremastrum family is characterized by resupinate and thin basidiomata, smooth, verruculose, or odontoid-semiporoid hymenophore, a monomitic hyphal structure, and generative hyphae bearing clamp connections, the presence of cystidia and hyphidia in some species, thin-walled, smooth, inamyloid, and acyanophilous basidiospores. In addition, four new species, namely, Trechispora dentata, Trechispora dimitiella, Trechispora fragilis, and Trechispora laevispora, are described and illustrated. In addition, three new combinations, namely, Brevicellicium daweishanense, Brevicellicium xanthum, and Sertulicium limonadense, are also proposed.Entities:
Keywords: Hydnodontaceae; Trechispora; phylogenetic analysis; taxonomy; wood-rotting fungi
Year: 2022 PMID: 35547118 PMCID: PMC9083364 DOI: 10.3389/fmicb.2022.818358
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 6.064
Information of taxa used in phylogenetic analyses.
| Species | Collector ID (herbarium ID) | GenBank accession no. | |
| ITS | nLSU | ||
| PBM 2295 |
|
| |
|
| LISU 178566 (holotype) |
|
|
|
| LISU 178590 |
|
|
|
|
|
|
|
|
|
|
|
|
|
| MA-Fungi 26554 (holotype) |
|
|
|
| KHL 8571 (GB) |
|
|
|
| MA-Fungi 23496 |
|
|
|
|
|
|
|
|
|
|
|
|
|
| He 5700 (BJFC) |
|
|
|
| He 5693 (BJFC) |
|
|
|
| EL 15-98 (GB) |
|
|
|
| MW 331 |
|
|
|
| TNM F24944 (holotype) |
|
|
|
| AFTOL-ID 599 |
|
|
|
| Berglund 150-02 (GB) |
|
|
|
| GEL2196 (KAS) |
|
|
|
| Dai 12692 (BJFC) |
|
|
|
| Cui 5183 (BJFC) |
|
|
|
| GB0150230 |
|
|
|
| Bernicchia 8122 (GB) |
|
|
|
| TFB13611 | – |
|
|
| FLOR56185 |
| – |
|
| He 5192 (BJFC) | – |
|
|
| MA-Fungi 86368 (holotype) |
| – |
|
| He 3338 |
|
|
|
| Spirin 10425 (H) |
|
|
|
| LY 13467 |
| – |
|
|
|
|
|
|
|
|
|
|
|
| KHL13727 (GB) |
|
|
|
| Soderholm 3886 (H, holotype) |
|
|
|
| Miettinen 10380.1 (H) |
|
|
|
| Cui 8401 (BJFC) |
|
|
|
| KHL 16097 (URM) |
|
|
|
| KHL 16004 (URM) |
|
|
|
| Motato-Vásquez 894 (SP, holotype) |
|
|
|
| LIP 0001413 (holotype) |
|
|
| GUY13-119 (GG) |
|
| |
| KHL 16988 (MG) |
|
| |
|
| Miettinen 14333 (MAN, holotype) |
|
|
|
| Spirin 8598 (H, holotype) |
|
|
|
| KHL 12022 (O, holotype) |
|
|
|
| Motato-Vásquez 833 (SP, holotype) |
|
|
|
| Kunttu 5959 (H) |
|
|
|
| Miettinen 14550.1 (H) |
|
|
|
| KHL 11849 (GB) |
|
|
|
| Fonneland 2011-78 (O, holotype) |
|
|
|
| Spirin 8778 (H) |
|
|
|
| He 3968 (BJFC) |
|
|
|
| Spirin 3830 (H) |
|
|
|
| AFTOL-ID 665 |
|
|
|
| KHL8570 (GB) |
|
|
|
| CLZhao 3302 (SWFC) |
|
|
|
| CBS 142.63 (holotype) |
|
|
|
| TU 110332 |
| – |
|
| TU 115568 |
| – |
|
| KHL11064 (GB) |
|
|
|
| AMO456 |
|
|
|
| AMO422 (holotype) |
|
|
|
| FR-0219442 |
|
|
|
| FR-0219443 (holotype) |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| FR-0219445 (holotype) |
|
|
|
| FR-0219448 |
| – |
|
| MA-Fungi 82485 (holotype) |
|
|
|
| KHL 8793 (GB) |
|
|
|
| KHL 8451 (GB) |
|
|
|
| CLZhao 7969 (SWFC) |
|
|
|
| CLZhao 4154 (SWFC, holotype) |
|
|
|
| CLZhao 4571 (SWFC, holotype) |
|
|
|
| CLZhao 995 (SWFC) |
|
|
|
|
|
|
|
|
| AMO1139 (holotype) |
|
|
|
| AMO824 |
|
|
|
| SFSU DED8300 (holotype) |
|
|
|
| TL 11112 (holotype) |
|
|
|
| KHL 8795 (GB) |
|
|
|
| GB0090648 |
|
|
|
| GB0090521 |
| – |
|
| KGN 981002 (GB) |
|
|
|
|
|
|
|
|
| MEXU 28300 (holotype) |
|
|
|
| MEXU 28301 |
|
|
|
| URM 85884 (holotype) |
|
|
|
| DLL2011-186 (CFMR) |
| – |
|
| DLL2010-077 (CFMR) |
| – |
|
| GB0102694 |
|
|
|
| MA-Fungi 74044 |
|
|
|
| AMO713 |
|
|
|
| AMO795 (holotype) |
|
|
|
| KHL10881 (GB) |
|
|
|
| URM 85754 |
|
|
| AMO799 |
|
| |
| AMO440 |
|
| |
| KHL16968 (O) |
|
| |
|
|
|
|
|
|
|
|
|
|
|
| TU 115499 |
|
|
|
| MA-Fungi 70669 |
|
|
|
| KHL 8511 (GB) |
|
|
|
| AMO396 (holotype) |
|
|
|
| AMO390 |
|
|
|
| URM 85886 (holotype) |
|
|
|
| He 3191 (BJFC) |
|
|
*Newly generated sequences for this study. New species and new combinations or putatively new species are in bold.
Information of taxa used in molecular clock analysis.
| Species | Specimen no. | ITS | nLSU |
|
| HHB-2808 | GU187505 | GU187561 |
|
| MJL-4413 | GU187500 | GU187559 |
|
| CBS 418.72 | GU187504 | GU187557 |
|
| Xiaoheimao | LT716074 | KY418890 |
| PBM 2295 | DQ200918 | AY634277 | |
|
| MG75 | HM046875 | HM046931 |
|
| AFTOL-ID 1527 | DQ484064 | DQ154112 |
|
| AFTOL-ID 452 | DQ200923 | DQ234539 |
|
| LISU 178566 | NR_119820 | HE963774 |
|
| LISU 178590 | HE963775 | HE963776 |
|
| CLZhao 17860 | MW302337 | MW293866 |
|
| CLZhao 18255 | MW302338 | MW293867 |
|
| MA-Fungi 26554 | HE963777 | HE963778 |
|
| KHL8571 | HE963792 | HE963793 |
|
| MA-Fungi 23496 | HE963787 | HE963788 |
|
| CLZhao 17781 | MW302340 | MW293869 |
|
| CLZhao 2632 | MW302339 | MW293868 |
|
| Cui 10013 | KY131832 | KY131891 |
|
| AFTOL-ID 438 | AY789083 | AY701526 |
|
| Cui 10319 | KU360687 | KU360653 |
|
| Dai 10944 | KY693737 | KY693757 |
|
| MG43 | GU590877 | AY463401 |
|
| TUB 020203 | KF061265 | KF061265 |
|
| AFTOL-ID 1552 | DQ645516 | DQ645514 |
|
| AFTOL-ID 454 | AY854070 | AY701525 |
|
| He 5700 | MK204534 | MK204547 |
|
| He5693 | MK204533 | MK204546 |
|
| EL 15-98 | AF347112 | AF347112 |
|
| MW 331 | AF291280 | AF291326 |
|
| MSK-F 7245a | MK575201 | MK598734 |
|
| MSK-F 5548 | MK575204 | MK598736 |
|
| TNMF 24944 | KC928274 | KC928275 |
|
| AFTOL-ID 599 | DQ249274 | AY646100 |
|
| MUCL 53551 | JX093789 | JX093833 |
|
| AFTOL 688 | AY854080 | AY684157 |
|
| Wilcox-3BB | HM536091 | HM536061 |
|
| ARIZAN 027866 | HM536092 | HM536063 |
|
| AFTOL-ID 701 | AY854084 | AY629318 |
|
| ZRL2015011 | LT716066 | KY418882 |
|
| He1049 | JQ716407 | JQ279667 |
| Hyphodontia densispora | LWZ 20170908-5 | MT319426 | MT319160 |
|
| LWZ 20170818-13 | MT319420 | MT319151 |
|
| CBS 252.74 | GU187524 | GU187581 |
|
| MB 95-038 | DQ534570 | DQ534669 |
|
| KHL 11730 | DQ873609 | DQ873610 |
|
| LWZ 20170816-9 | MT319407 | MT319139 |
|
| ZRL20151133 | LT716026 | KY418841 |
|
| HHB-7628 | GU187528 | GU187588 |
|
| Cui 6468 | KT203288 | KT203309 |
|
| LWZ20170817-2 | MT319459 | MT319194 |
|
| AFTOL-ID 1130 | DQ521417 | AY885163 |
|
| Cui 10372 | KT203290 | MT319396 |
|
| Dai 5065 | KT203293 |
|
|
| OR74A | HQ271348 | AF286411 |
|
| JV 1704/39 | MF629835 | MF629831 |
|
| Cui 5277 | MF629836 | MT319398 |
|
| Cui 10252 | KX673606 | MH152358 |
|
| Dai 12692 | KT157833 | KT157838 |
|
| Cui 5183 | KU509521 | KT152145 |
|
| GB0150230 | LR694188 | LR694210 |
|
| Bernicchia8122 | MN937559 | MN937559 |
|
| AFTOL-ID 724 | AY854078 | AY645057 |
|
| ZRL20151459 | LT716075 | KY418899 |
|
| Cui 5555 | KT203295 | KT203316 |
|
| TFB13611 | – | JQ684661 |
|
| He 5192 | – | MK204553 |
|
| MA-Fungi 86368 | HG315521 | – |
|
| He 3338 | MK204552 | MK204540 |
|
| Spirin 10425 | MN987943 | MN987943 |
|
| LY 13467 | MG913225 | – |
|
| LIP 0001683 | MT180981 | MT180978 |
|
| KHL13727 | MN937563 | MN937563 |
|
| Soderholm 3886 | MT002311 | MT664174 |
|
| Cui 8401 | KX081133 | KX081184 |
|
| Miettinen 10380.1 | MN991176 | MW045423 |
|
| KHL 16097 | MN937564 | MN937564 |
|
| KHL 16004 | MN937567 | MN937567 |
|
| MV894 | MN954694 | MW045424 |
|
| LIP 0001413 | NR_161047 | NG_075239 |
| GUY13-119 | MG913224 | MG913210 | |
| KHL 16988 | MN937568 | MN937568 | |
|
| Miettinen 14333 | MN937568 | MN937568 |
|
| Spirin 8598 | MT002324 | MT664173 |
|
| KHL12022 | MN937570 | MN937570 |
|
| MV833 | MN954693 | MW045435 |
|
| Kunttu 5959 | MT075859 | MT002335 |
|
| Miettinen 14550.1 | MT075860 | MT002336 |
|
| KHL 11849 (GB) | MN937571 | MN937571 |
|
| Fonneland 2011-78 | MN937572 | MN937572 |
|
| Spirin 8778 | MN991182 | MN991182 |
|
| He3968 | MK204531 | MK204544 |
|
| VS3830 | MN937573 | MN937573 |
|
| AFTOL 717 | AY854069 | AY684154 |
|
| ZRL20151295 | LT716082 | KY418908 |
|
| ZRL20151477 | LT716079 | KY418903 |
|
| KHL8795 | AF347090 | AF347090 |
| PBM2324 | DQ411526 | – | |
|
| He 3191 | MK204537 | MK204545 |
|
| AFTOL 505 | AY854090 | AF453938 |
|
| LWZ 20171015-33 | MT319518 | MT319264 |
FIGURE 1Phylogeny of Trechisporales generated by maximum likelihood (ML) analyses based on combined 5.8S + nLSU sequences. Branches are labelled with ML bootstrap (BT) >65%, and Bayesian posterior probabilities (BPP) >0.90, respectively. New combinations, the sequence origin from holotype and the type status of the species in the genus are indicated in bold.
FIGURE 2Phylogeny of Trechispora generated by ML analyses based on combined ITS sequences. Branches are labelled with ML BT >65%, Parsimony Bootstrap Proportions >70%, and BPP >0.90, respectively. Putatively new species, the sequence origin from the holotype, and the type status of the species in the genus are indicated in bold.
FIGURE 3Maximum clade credibility (MCC) chronogram and estimated divergence times of all main lineages in Basidiomycota inferred from the combined data set of 5.8S and LSU regions. The estimated divergence times of 95% highest posterior density (HPD) for all clades are indicated as node bars. The colored dots refer to the positions of the mean stem age of Sistotremastrum family, Hydnodontaceae, Trechisporales, and Hymenochaetales. The BPP above 0.8 and the mean divergence times of clades are labelled above and below the branches, respectively, at the nodes.
FIGURE 4Trechispora dentata (holotype, Dai 22565). (A) A basidioma, (B) hyphae from subiculum, (C) hyphae from trama, (D) hyphae with ampullate septa (black arrow), (E) basidia and basidioles, and (F) basidiospores. Photo by Ya-Ping Lian and Zhan-Bo Liu.
FIGURE 5Trechispora dimitiella (holotype, Dai 21931). (A) A basidioma, (B) hyphae with ampullate septa from subiculum (black arrow), (C) hyphae from tubes, (D) basidia, (E) basidioles, and (F) basidiospores. Photo by Ya-Ping Lian and Zhan-Bo Liu.
FIGURE 6Trechispora fragilis (holotype, Dai 20535). (A) A basidioma, (B) hyphae with ampullate septa from subiculum (black arrows), (C) hyphae from aculei, (D) hymenium with basidioles, (E) basidia, and (F) basidiospores. Photo by Ya-Ping Lian and Zhan-Bo Liu.
FIGURE 7Trechispora laevispora (holotype, Dai 21655). (A) A basidioma, (B,C) hyphae from subiculum, (D) subicular hyphae with ampullate septa (black arrow) and a piece of hymenium, (E) basidia and basidioles, and (F) basidiospores. Photo by Ya-Ping Lian and Zhan-Bo Liu.