| Literature DB >> 35541146 |
Natthakaln Lomchoey1, Panomwan Panseeta1,2, Pornthip Boonsri1, Nuttapon Apiratikul1, Samran Prabpai3, Palangpon Kongsaeree3, Sunit Suksamrarn1.
Abstract
Six new 14-membered ring cyclopeptide alkaloids, cambodines A-F (1-6), and two known compounds, frangufoline (7) and lotusanine B (8), were isolated from the root bark extract of Ziziphus cambodiana Pierre. Their structures and configurations were established based on 1D and 2D NMR, HRMS, ECD, and X-ray crystallographic data. Compounds 1 and 3 are rare 5(14)-type cyclopeptide alkaloids that possess an imidazolidin-4-one ring in the terminal unit. The cyclopeptides were tested for their in vitro antiplasmodial, antitubercular, and cytotoxic effects against three cancer cell lines. Compound 3 showed significant antiplasmodial activity against the malarial parasite Plasmodium falciparum, with an IC50 value of 6.09 μM. This journal is © The Royal Society of Chemistry.Entities:
Year: 2018 PMID: 35541146 PMCID: PMC9080573 DOI: 10.1039/c7ra13050c
Source DB: PubMed Journal: RSC Adv ISSN: 2046-2069 Impact factor: 4.036
Fig. 1Chemical structures of compounds 1–8.
1H and 13C NMR spectroscopic data for compounds 1–3
| No. |
|
| ||||||
|---|---|---|---|---|---|---|---|---|
| 1 | 2 | 2 | 3 | 1 | 2 | 2 | 3 | |
| 1 | 125.8 | 127.5 | 117.5 | 117.5 | 6.60, d (7.3) | 6.63, d (7.3) | 6.44, d (7.1) | 6.45, d (7.4) |
| 2 | 126.7 | 126.7 | 125.5 | 125.4 | 6.23, dd (7.3, 4.5) | 6.14, dd (7.3, 3.4) | 6.65, dd (9.6, 7.1) | 6.65, dd (9.2, 7.4) |
| 4 | 168.9 | 169.0 | 167.2 | 167.2 | ||||
| 5 | 57.4 | 57.3 | 59.3 | 59.3 | 3.81, t (8.5) | 3.81, t (8.9) | 4.08, dd (8.3, 4.1) | 3.98, dd (8.0, 3.9) |
| 7 | 169.9 | 170.2 | 171.0 | 171.0 | ||||
| 8 | 56.0 | 55.9 | 56.7 | 57.2 | 4.78, brt (8.8) | 4.83, dt (9.8, 7.9) | 4.78, dd (8.9, 6.7) | 4.70, dd (8.4, 7.1) |
| 9 | 80.8 | 80.9 | 81.5 | 81.6 | 5.84, d (8.1) | 5.84, d (7.9) | 6.10, d (6.7) | 6.17, d (7.1) |
| 11 | 154.7 | 154.8 | 155.1 | 155.2 | ||||
| 12 | 121.8 | 118.1 | 123.1 | 122.9 | 7.14, overlap | 7.16, overlap | 7.32, overlap | 7.35, dd (8.4, 2.1) |
| 13 | 129.5 | 129.4 | 130.1 | 130.1 | 6.96, d (6.9) | 6.96, overlap | 7.15, overlap | 7.17, overlap |
| 14 | 131.5 | 131.2 | 132.5 | 132.2 | ||||
| 15 | 130.0 | 129.9 | 131.9 | 131.8 | 6.93, d (6.9) | 6.95, overlap | 7.11, overlap | 7.12, overlap |
| 16 | 119.5 | 121.1 | 122.6 | 122.5 | 7.19, overlap | 7.06, overlap | 7.34, overlap | 7.40, dd (8.4, 2.1) |
| 17 | 35.5 | 37.2 | 35.2 | 35.3 | 1.58, m | 1.45, m | 2.11, m | 2.04, m |
| 18 | 24.0 | 24.5 | 23.9 | 23.9 | a 1.16, m | a 1.15, m | a 1.25, m | a 1.15, m |
| b 0.99, m | b 0.80, m | b 0.80, m | b 0.85, m | |||||
| 19 | 10.8 | 11.3 | 11.9 | 11.9 | 0.66, t (7.1) | 0.64, overlap | 0.84, t (7.2) | 0.79, t (7.2) |
| 20 | 15.4 | 15.2 | 15.8 | 16.4 | 0.65, t (7.3) | 0.64, overlap | 0.75, d (6.8) | 0.67, d (6.9) |
| 21 | 137.8 | 137.5 | 136.8 | 137.2 | ||||
| 22,22′ | 128.4 | 128.6 | 128.1 | 128.2 | 7.44, dd (7.7, 2.2) | 7.49, d (6.9) | 7.51, dd (7.5, 1.0) | 7.67, brd (7.2) |
| 23,23′ | 127.6 | 127.7 | 128.8 | 128.8 | 7.28, overlap | 7.27, t (6.9) | 7.40, overlap | 7.48, brt (7.4) |
| 24 | 127.9 | 127.8 | 128.9 | 128.9 | 7.26, overlap | 7.22, overlap | 7.45, overlap | 7.31, overlap |
| 26 | 167.4 | 169.5 | 170.9 | 170.0 | ||||
| 27 | 53.4 | 53.0 | 54.7 | 63.0 | 4.58, dd (10.7, 5.1) | 4.23, dt (10.8, 7.9) | 4.20, dd (10.4, 4.8) | 3.49, dd (11.9, 4.4) |
| 28 | 34.2 | 37.5 | 36.6 | 33.2 | 2.61, m | a 2.33, dd (11.2, 7.9) | a 2.88, dd (14.2, 4.8) | a 2.29, brt (12.6) |
| b 2.13, brt (11.2) | b 2.45, dd (14.2, 10.4) | b 2.19, dd (12.6, 4.4) | ||||||
| 29 | 136.7 | 137.7 | 136.3 | 136.6 | ||||
| 30,30′ | 128.8 | 129.0 | 128.9 | 129.2 | 7.02, overlap | 6.99, overlap | 6.98, dd (8.4, 2.1) | 6.93, dd (7.6, 1.1) |
| 31,31′ | 127.9 | 127.5 | 128.6 | 128.5 | 7.08, overlap | 7.10, overlap | 7.18, overlap | 7.22, overlap |
| 32 | 126.2 | 126.0 | 127.0 | 127.0 | 7.07, overlap | 7.08, overlap | 7.22, overlap | 7.24, overlap |
| 34 | 170.7 | 172.2 | 174.2 | 174.8 | ||||
| 35 | 69.7 | 69.1 | 69.1 | 71.0 | 2.45, brs | 2.35, brs | 2.50, brs | 2.57, brs |
| 36 | 35.0 | 36.1 | 37.6 | 36.5 | 1.23, m | 1.52, m | 1.51, m | 1.50, m |
| 37 | 24.3 | 24.1 | 24.2 | 24.8 | 0.99, m | a 1.15, m | a 0.86, m | 1.28, m |
| b 0.82, m | b 0.70, m | |||||||
| 38 | 12.0 | 10.9 | 11.7 | 12.2 | 0.67, t (6.3) | 0.64, overlap | 0.65, t (6.0) | 0.85, t (7.3) |
| 39 | 14.5 | 15.4 | 15.5 | 14.9 | 0.41, d (6.8) | 0.46, d (6.7) | 0.62, d (6.9) | 0.77, d (6.8) |
| 41 | 66.3 | 78.9 | a 3.99, d (4.4) | 2.41, q (5.4) | ||||
| b 3.11, d (4.4) | ||||||||
| 42 | 19.5 | 0.92, d (5.4) | ||||||
| 3-NH | 7.84, brd (4.5) | 8.05, brd (3.4) | 6.73, d (9.6) | 6.52, d (9.2) | ||||
| 6-NH | 7.54, brd (8.5) | 7.62, d (8.9) | 6.19, d (8.3) | 5.92, d (8.0) | ||||
| 25-NH | 8.23, d (9.4) | 7.93, d (8.9) | 6.84, d (8.9) | 8.73, d (8.4) | ||||
| 33-NH | 7.64, d (7.9) | |||||||
| NMe | 40.5 | 34.9 | 36.5 | 39.6 | 2.13, s | 1.79, s | 2.11, s | 1.85, s |
Recorded in DMSO-d6.
Recorded in CDCl3.
Fig. 2Selected COSY, HMBC and NOESY interactions for compounds 1, 3, 4 and 5.
Fig. 3EI fragmentations of compounds 1 and 3.
Fig. 4The superimpose of calculated ECD of (5S,8S,9S,17S,27S,35S,36S)-1 and the (5R,8R,9R,17R,27R,35R,36R)-1 compared to the observed ECD spectra (A); the ECD spectra of each epimer for 1 were also calculated for the stereochemical structures (B) and the theoretical spectra of 1–3 were calculated at the M062X/6-311G(d,p)//M062X/6-311G level of theory in the MeOH solution and their superimpose ECD (C).
1H and 13C NMR spectroscopic data for compounds 4–6 in CDCl3
| No. |
|
| ||||
|---|---|---|---|---|---|---|
| 4 | 5 | 6 | 4 | 5 | 6 | |
| 1 | 121.2 | 117.8 | 116.9 | 6.59, brs | 6.46, d (7.6) | 6.47, d (7.6) |
| 2 | 125.2 | 125.4 | 125.6 | 6.59, brs | 6.66, dd (9.5, 7.6) | 6.37, brt (7.6) |
| 4 | 167.8 | 166.8 | 166.5 | |||
| 5 | 57.5 | 59.3 | 55.4 | 4.51, brt (8.1) | 4.01, dd (8.5, 4.4) | 4.44, ddd (11.2, 8.1, 3.4) |
| 7 | 167.7 | 168.2 | 168.1 | |||
| 8 | 57.8 | 57.9 | 57.6 | 4.87, d (7.3) | 5.09, d (7.6) | 4.95, d (7.2) |
| 9 | 81.6 | 80.7 | 81.7 | 5.90, d (7.3) | 5.99, d (7.6) | 5.91, d (7.2) |
| 11 | 155.3 | 155.0 | 155.4 | |||
| 12 | 123.2 | 123.3 | 123.2 | 7.26, overlap | 7.32, overlap | 7.34, overlap |
| 13 | 130.2 | 130.2 | 130.4 | 7.05, dd (6.8, 1.3) | 7.13, t (7.1) | 7.14, overlap |
| 14 | 131.9 | 132.3 | 132.2 | |||
| 15 | 131.0 | 131.6 | 131.7 | 7.10, dd (6.8, 1.3) | 7.10, t (7.1) | 7.14, overlap |
| 16 | 121.9 | 122.8 | 122.5 | 7.29, overlap | 7.34, overlap | 7.34, overlap |
| 17 | 73.1 | 34.4 | 36.7 | 4.94, d (7.6) | 2.16, m | a 3.40, dd (14.8, 3.4) |
| b 2.61, dd (14.8, 11.2) | ||||||
| 18a | 139.0 | 136.9 | ||||
| 18,18′ | 126.9 | 23.9 | 128.8 | 7.24, overlap | 1.17, m, 0.88, m | 7.09, d (8.7) |
| 19,19′ | 128.7 | 11.7 | 128.5 | 7.03, overlap | 0.81, t (6.3) | 7.19, brt (8.7) |
| 20 | 128.7 | 16.5 | 127.1 | 7.24, overlap | 0.70, d (6.8) | 7.07, overlap |
| 21 | 136.0 | 136.2 | 136.0 | |||
| 22,22′ | 128.2 | 128.2 | 128.2 | 7.46, overlap | 7.52, dd (7.7, 1.9) | 7.46, overlap |
| 23,23′ | 128.6 | 128.8 | 128.8 | 7.19, overlap | 7.39, t (6.9) | 7.39, overlap |
| 24 | 129.1 | 129.2 | 129.0 | 7.39, overlap | 7.41, overlap | 7.11, overlap |
| 26 | 172.1 | 172.8 | 172.3 | |||
| 27 | 66.5 | 70.4 | 66.1 | 2.69, m | 2.48, d (2.6) | 2.39, m |
| 28 | 37.5 | 35.8 | 37.6 | 2.67, m | 1.29, m | a 2.66, dd (13.8, 8.9) |
| b 1.72, dd (13.8, 11.2) | ||||||
| 29 | 138.1 | 24.7 | 138.2 | 1.08, m | ||
| 30 | 129.1 | 11.9 | 129.1 | 7.39, overlap | 0.77, t (7.4) | 7.00, brd (6.1) |
| 31 | 128.2 | 14.7 | 128.2 | 7.24, overlap | 0.55, d (6.8) | 7.26, overlap |
| 32 | 126.3 | 126.2 | 7.47, overlap | 7.22, overlap | ||
| 33 | 67.6 | a 3.83, br d (3.9) | ||||
| b 3.22, br d (3.9) | ||||||
| 34 | 67.1 | 67.0 | a 3.66, d (4.3) | a 3.56, d (4.7) | ||
| b 2.70, d (4.3) | b 2.43, d (4.7) | |||||
| 3-NH | 6.59, brs | 6.50, d (9.5) | 6.51, d (9.9) | |||
| 6-NH | 6.37, brd (8.5) | 5.81, d (8.5) | 6.40, d (8.1) | |||
| NMe | 39.8 | 41.1 | 39.5 | 1.64, s | 2.11, s | 1.48, s |
Fig. 5ORTEP plot of the X-ray crystal structure for compound 6.
Fig. 6The superimpose of calculated ECD for 4–6 in comparison to the observed ECD spectra of 4.