Literature DB >> 24729741

Determination of Absolute Configuration of Natural Products: Theoretical Calculation of Electronic Circular Dichroism as a Tool.

Xing-Cong Li1, Daneel Ferreira1, Yuanqing Ding2.   

Abstract

Determination of absolute configuration (AC) is one of the most challenging features in the structure elucidation of chiral natural products, especially those with complex structures. With revolutionary advancements in the area of quantum chemical calculations of chiroptical spectroscopy over the past decade, the time dependent density functional theory (TDDFT) calculation of electronic circular dichroism (ECD) spectra has emerged as a very promising tool. The principle is simply based on the comparison of the calculated and experimental ECD spectra: the more closely they match, the more reliable conclusion for the AC assignment can be drawn. This review attempts to use several examples representing monomeric flavonoids, rotationally restricted biflavonoids, complex hexahydroxydiphenoyl-containing flavonoids, conformationally flexible and restrained sesquiterpenoids, cembrane-africanene terpenoids, dihydropyranocoumarins, alkaloids, and dihydroxanthones to illustrate the applicability of this approach in determining the AC of structurally diverse natural products. The findings clearly indicate that the TDDFT calculation of ECD spectra can quantify the contribution of individual conformers and the interaction of multiple chromophores, making it possible to determine the AC of complex chiral molecules. The calculated electronic transitions and molecular orbitals provide new insight into the interpretation of ECD spectra at the molecular level.

Entities:  

Keywords:  Absolute configuration; TDDFT; electronic circular dichroism; natural products; theoretical calculation

Year:  2010        PMID: 24729741      PMCID: PMC3983998          DOI: 10.2174/138527210792927717

Source DB:  PubMed          Journal:  Curr Org Chem        ISSN: 1385-2728            Impact factor:   2.180


  56 in total

1.  Determination of absolute configuration using ab initio calculation of optical rotation.

Authors:  P J Stephens; F J Devlin; J R Cheeseman; M J Frisch; O Bortolini; P Besse
Journal:  Chirality       Date:  2003       Impact factor: 2.437

2.  Application of electronic circular dichroism in configurational and conformational analysis of organic compounds.

Authors:  Nina Berova; Lorenzo Di Bari; Gennaro Pescitelli
Journal:  Chem Soc Rev       Date:  2007-02-05       Impact factor: 54.564

Review 3.  The online assignment of the absolute configuration of natural products: HPLC-CD in combination with quantum chemical CD calculations.

Authors:  Gerhard Bringmann; Tobias A M Gulder; Matthias Reichert; Tanja Gulder
Journal:  Chirality       Date:  2008-05-15       Impact factor: 2.437

4.  Lythraceae alkaloids. X. Assignment of absolute stereochemistries on the basis of chiraloptical effects.

Authors:  J P Ferris; C B Boyce; R C Briner; U Weiss; I H Qureshi; N E Sharpless
Journal:  J Am Chem Soc       Date:  1971-06-16       Impact factor: 15.419

5.  Hyperolactone C: determination of its absolute configuration by comparison of experimental and calculated CD spectra.

Authors:  Wolfgang Schühly; Sara L Crockett; Walter M F Fabian
Journal:  Chirality       Date:  2005-05-15       Impact factor: 2.437

6.  Phenolic compounds from Miconia myriantha inhibiting Candida aspartic proteases.

Authors:  X C Li; M R Jacob; D S Pasco; H N ElSohly; A C Nimrod; L A Walker; A M Clark
Journal:  J Nat Prod       Date:  2001-10       Impact factor: 4.050

7.  Electronic circular dichroism of disulphide bridge: ab initio quantum-chemical calculations.

Authors:  Wojciech Skomorowski; Magdalena Pecul; Paweł Sałek; Trygve Helgaker
Journal:  J Chem Phys       Date:  2007-08-28       Impact factor: 3.488

8.  Theoretical calculation of electronic circular dichroism of the rotationally restricted 3,8''-biflavonoid morelloflavone.

Authors:  Yuanqing Ding; Xing-Cong Li; Daneel Ferreira
Journal:  J Org Chem       Date:  2007-10-24       Impact factor: 4.354

9.  Scuteflorins A and B, dihydropyranocoumarins from Scutellaria lateriflora.

Authors:  Jing Li; Yuanqing Ding; Xing-Cong Li; Daneel Ferreira; Shabana Khan; Troy Smillie; Ikhlas A Khan
Journal:  J Nat Prod       Date:  2009-06       Impact factor: 4.050

10.  Pregnane glycosides from Hoodia gordonii.

Authors:  Yatin J Shukla; Rahul S Pawar; Yuanqing Ding; Xing-Cong Li; Daneel Ferreira; Ikhlas A Khan
Journal:  Phytochemistry       Date:  2009-03-19       Impact factor: 4.072

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  32 in total

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Authors:  Andrew N Dinh; Ryan R Noorbehesht; Sean T Toenjes; Amy C Jackson; Mirza A Saputra; Sean M Maddox; Jeffrey L Gustafson
Journal:  Synlett       Date:  2018-07-31       Impact factor: 2.454

2.  Creation of an HDAC-based yeast screening method for evaluation of marine-derived actinomycetes: discovery of streptosetin A.

Authors:  Taro Amagata; Jing Xiao; Yi-Pei Chen; Nicholas Holsopple; Allen G Oliver; Trevor Gokey; Anton B Guliaev; Katsuhiko Minoura
Journal:  J Nat Prod       Date:  2012-11-20       Impact factor: 4.050

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Authors:  Takuji Nakashima; Rei Miyano; Masato Iwatsuki; Tatsuya Shirahata; Toru Kimura; Yukihiro Asami; Yoshinori Kobayashi; Kazuro Shiomi; George A Petersson; Yōko Takahashi; Satoshi Ōmura
Journal:  J Antibiot (Tokyo)       Date:  2016-01-13       Impact factor: 2.649

4.  New Techniques of Structure Elucidation for Sesquiterpenes.

Authors:  Julio C Pardo-Novoa; Carlos M Cerda-García-Rojas
Journal:  Prog Chem Org Nat Prod       Date:  2021

5.  Structural Elucidation of Cryptic Algaecides in Marine Algal-Bacterial Symbioses by NMR Spectroscopy and MicroED.

Authors:  Jong-Duk Park; Yuchen Li; Kyuho Moon; Esther J Han; Seoung Rak Lee; Mohammad R Seyedsayamdost
Journal:  Angew Chem Int Ed Engl       Date:  2021-12-10       Impact factor: 16.823

Review 6.  Circular dichroism calculation for natural products.

Authors:  Alfarius Eko Nugroho; Hiroshi Morita
Journal:  J Nat Med       Date:  2013-04-07       Impact factor: 2.343

7.  Opportunities and Limitations for Assigning Relative Configurations of Antibacterial Bislactones using GIAO NMR Shift Calculations.

Authors:  Sonja L Knowles; Christopher D Roberts; Mario Augustinović; Laura Flores-Bocanegra; Huzefa A Raja; Kimberly N Heath-Borrero; Joanna E Burdette; Joseph O Falkinham Iii; Cedric J Pearce; Nicholas H Oberlies
Journal:  J Nat Prod       Date:  2021-03-25       Impact factor: 4.050

8.  Isolation and Structural Elucidation of Compounds from Pleiocarpa bicarpellata and Their In Vitro Antiprotozoal Activity.

Authors:  Ozlem Sevik Kilicaslan; Sylvian Cretton; Luis Quirós-Guerrero; Merveilles A Bella; Marcel Kaiser; Pascal Mäser; Joseph T Ndongo; Muriel Cuendet
Journal:  Molecules       Date:  2022-03-28       Impact factor: 4.411

9.  Waikikiamides A-C: Complex Diketopiperazine Dimer and Diketopiperazine-Polyketide Hybrids from a Hawaiian Marine Fungal Strain Aspergillus sp. FM242.

Authors:  Fuqian Wang; Ariel M Sarotti; Guangde Jiang; José C Huguet-Tapia; Shao-Liang Zheng; Xiaohua Wu; Chunshun Li; Yousong Ding; Shugeng Cao
Journal:  Org Lett       Date:  2020-05-20       Impact factor: 6.005

10.  Fusarins G-L with Inhibition of NO in RAW264.7 from Marine-Derived Fungus Fusarium solani 7227.

Authors:  Guangyuan Luo; Li Zheng; Qilin Wu; Senhua Chen; Jing Li; Lan Liu
Journal:  Mar Drugs       Date:  2021-05-25       Impact factor: 5.118

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