Literature DB >> 17849392

cclib: a library for package-independent computational chemistry algorithms.

Noel M O'Boyle1, Adam L Tenderholt, Karol M Langner.   

Abstract

There are now a wide variety of packages for electronic structure calculations, each of which differs in the algorithms implemented and the output format. Many computational chemistry algorithms are only available to users of a particular package despite being generally applicable to the results of calculations by any package. Here we present cclib, a platform for the development of package-independent computational chemistry algorithms. Files from several versions of multiple electronic structure packages are automatically detected, parsed, and the extracted information converted to a standard internal representation. A number of population analysis algorithms have been implemented as a proof of principle. In addition, cclib is currently used as an input filter for two GUI applications that analyze output files: PyMOlyze and GaussSum. (c) 2007 Wiley Periodicals, Inc.

Mesh:

Year:  2008        PMID: 17849392     DOI: 10.1002/jcc.20823

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  240 in total

1.  Investigation of the effects of copper ions on protein aggregation using a model system.

Authors:  C Capanni; N Taddei; S Gabrielli; L Messori; P Orioli; F Chiti; M Stefani; G Ramponi
Journal:  Cell Mol Life Sci       Date:  2004-04       Impact factor: 9.261

2.  Density functional investigation of hydrogen gas adsorption on Fe-doped pristine and Stone-Wales defected single-walled carbon nanotubes.

Authors:  Chanukorn Tabtimsai; Somchai Keawwangchai; Nadtanet Nunthaboot; Vithaya Ruangpornvisuti; Banchob Wanno
Journal:  J Mol Model       Date:  2012-03-21       Impact factor: 1.810

3.  Application of polythiophene to methanol vapor detection: an ab initio study.

Authors:  Ali Shokuhi Rad
Journal:  J Mol Model       Date:  2015-10-15       Impact factor: 1.810

4.  A new Dual-Channel Chemosensor Based on Chemodosimeter Approach for Detecting Cyanide in Aqueous Solution: a Combination of Experimental and Theoretical Studies.

Authors:  Jae Jun Lee; Sun Young Lee; Kwon Hee Bok; Cheal Kim
Journal:  J Fluoresc       Date:  2015-08-06       Impact factor: 2.217

5.  Non-covalent functionalization of hexagonal boron nitride nanosheets with guanine.

Authors:  E Chigo Anota; Y Tlapale; M Salazar Villanueva; J A Rivera Márquez
Journal:  J Mol Model       Date:  2015-07-31       Impact factor: 1.810

6.  The encapsulated lithium effect on the first hyperpolarizability of C60Cl2 and C60F2.

Authors:  Yao-Dong Song; Liang Wang; Li-Ming Wu; Qiao-Ling Chen; Fa-Kun Liu; Xiao-Wen Tang
Journal:  J Mol Model       Date:  2016-02-03       Impact factor: 1.810

7.  Adsorption of carbon monoxide on the pristine, B- and Al-doped C3N nanosheets.

Authors:  Mansoureh Pashangpour; Ali Ahmadi Peyghan
Journal:  J Mol Model       Date:  2015-04-15       Impact factor: 1.810

8.  Furan and Julolidine-Based "Turn-on" Fluorescence Chemosensor for Detection of F- in a Near-Perfect Aqueous Solution.

Authors:  Ha Young Jeong; Seong Youl Lee; Cheal Kim
Journal:  J Fluoresc       Date:  2017-04-11       Impact factor: 2.217

9.  Molecular stacking character and charge transport properties of tetrabenzoheptacenes derivatives: the effects of nitrogen doping and phenyl substitution.

Authors:  Lin Guan; Wenliang Wang; Rong Shao; Fengyi Liu; Shiwei Yin
Journal:  J Mol Model       Date:  2015-04-25       Impact factor: 1.810

10.  Spectroscopic and electronic structure studies of phenolate Cu(II) complexes: phenolate ring orientation and activation related to cofactor biogenesis.

Authors:  Somdatta Ghosh; Jordi Cirera; Michael A Vance; Tetsuya Ono; Kiyoshi Fujisawa; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2008-12-03       Impact factor: 15.419

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