| Literature DB >> 35540604 |
Hetong Wang1,2, Xianwei Zhao2, Chenpeng Zuo2, Xiaohui Ma2, Fei Xu1,2, Yanhui Sun3, Qingzhu Zhang2.
Abstract
Aromatic acids, which are generated from numerous anthropogenic emissions and secondary transformations, have been considered to play a crucial role in new particle formation. In this study, we performed theoretical calculations at the PW91PW91/6-311++G(3df,3pd) level to investigate the interaction between typical aromatic acids namely benzoic acid (BA), phenylacetic acid (PAA), phthalic acid (PA), isophthalic acid (mPA), and terephthalic acid (PTA) and common atmospheric nucleation precursors namely sulfuric acid (SA), water (H2O), ammonia (NH3), methylamine (MA), dimethylamine (DMA), and trimethylamine (TMA). The geometric analysis, Gibbs free energy analysis, OH/NH-stretching vibrational frequency calculation, and atoms in molecules (AIM) analysis were conducted to determine the interactions in the complexes. The heterodimers formed a six to eight membered ring through four types of hydrogen bond, and the bond strength could be ranked in descending order: SO-H⋯O > O-H⋯O/N > N-H⋯O. The BA/PAA/mPA/PTA-SA complexes had the lowest Gibbs free energy values. PA was more likely to interact with NH3 or amines rather than SA due to an intra-molecular hydrogen bond. Additionally, the aromatic acids have similar ability to interact with SA and NH3 as monocarboxylic/dicarboxylic acid. The formation potential of the heterodimers from aromatic acids with common nucleation precursors in ambient atmosphere was investigated. This journal is © The Royal Society of Chemistry.Entities:
Year: 2019 PMID: 35540604 PMCID: PMC9075000 DOI: 10.1039/c9ra07398a
Source DB: PubMed Journal: RSC Adv ISSN: 2046-2069 Impact factor: 4.036
Binding energy (BE), zero-point vibrational energy (ZPVE), enthalpy of formation (ΔHθ298 K) and Gibbs free energy of formation (ΔGθ298 K) at 298.15 K and 1 atm for aromatic acid-containing complexes derived at the PW91PW91/6-311++G(3df,3pd) level. The Gibbs free energies also calculated at M06-2X/6-311++G(3df,3pd) level. Energy is given in kcal mol−1
| Conformer | BE | ZPVE | Δ | Δ | Δ |
|---|---|---|---|---|---|
| BA–SA | −19.78 | −19.26 | −19.29 | −7.99 | −8.25 |
| BA–H2O | −11.84 | −9.50 | −10.27 | −0.57 | −0.30 |
| BA–NH3 | −12.46 | −10.70 | −11.09 | −2.12 | −1.78 |
| BA–MA | −13.47 | −12.27 | −12.24 | −2.59 | −2.05 |
| BA–DMA | −13.82 | −12.85 | −12.63 | −2.79 | −0.98 |
| BA–TMA | −13.23 | −12.41 | −12.09 | −1.89 | −3.51 |
| PAA–SA | −19.43 | −18.81 | −18.89 | −7.39 | −7.41 |
| PAA–H2O | −11.76 | −9.47 | −10.80 | 0.77 | −0.62 |
| PAA–NH3 | −12.49 | −10.69 | −11.12 | −2.03 | −0.12 |
| PAA–MA | −13.47 | −12.28 | −12.26 | −2.72 | −1.65 |
| PAA–DMA | −13.87 | −12.85 | −12.68 | −2.51 | −1.45 |
| PAA–TMA | −13.40 | −12.40 | −12.19 | −1.31 | −2.22 |
| PA–SA | −16.46 | −15.67 | −15.57 | −4.47 | −5.26 |
| PA–H2O | −11.84 | −9.73 | −10.36 | −0.84 | −1.41 |
| PA–NH3 | −14.81 | −13.36 | −13.70 | −4.95 | −4.06 |
| PA–MA | −16.18 | −15.36 | −15.32 | −5.86 | −4.14 |
| PA–DMA | −16.71 | −16.34 | −16.09 | −6.41 | −4.97 |
| PA–TMA | −16.46 | −16.34 | −16.03 | −5.64 | −5.34 |
| mPA–SA | −19.31 | −18.75 | −18.76 | −7.48 | −7.94 |
| mPA–H2O | −11.94 | −9.63 | −10.38 | −0.64 | −0.46 |
| mPA–NH3 | −13.01 | −11.29 | −11.66 | −2.73 | −2.42 |
| mPA–MA | −14.16 | −13.02 | −12.96 | −3.40 | −2.37 |
| mPA–DMA | −14.52 | −13.65 | −13.39 | −3.77 | −3.07 |
| mPA–TMA | −13.96 | −13.18 | −12.87 | −2.38 | −3.44 |
| PTA–SA | −19.24 | −18.67 | −18.67 | −7.35 | −7.67 |
| PTA–H2O | −11.88 | −9.58 | −10.33 | −0.64 | −0.37 |
| PTA–NH3 | −13.05 | −11.34 | −11.70 | −2.80 | −2.18 |
| PTA–MA | −14.14 | −13.00 | −12.85 | −3.25 | −2.51 |
| PTA–DMA | −14.51 | −13.62 | −13.39 | −3.50 | −1.41 |
| PTA–TMA | −14.02 | −13.36 | −12.99 | −3.09 | −3.66 |
BE corrected with ZPVE.
Fig. 1Geometries of aromatic acid-containing complexes calculated at the PW91PW91/6-311++G(3df,3pd) level. Green, yellow, blue, white, and red balls denote C, S, N, H, and O atoms, respectively.
Geometric parameters of the SO–H⋯O, O–H⋯O/N, and N–H⋯O hydrogen bonds in aromatic acid-containing complexes derived at the PW91PW91/6-311++G(3df,3pd) level. Angles are given in degrees (°); lengths and distances are given in angstrom (Å)
| Conformer | SO–H⋯O | O–H⋯O/N | N–H⋯O | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Δ |
|
|
| Δ |
|
|
| Δ |
|
| |
| BA–SA | 0.0863 | 1.4431 | 175.5 | 2.5036 | 0.0321 | 1.6380 | 178.4 | 2.6457 | |||
| BA–H2O | 0.0297/0.0222 | 1.7147/1.8450 | 157.8/143.7 | 2.6728/2.7073 | |||||||
| BA–NH3 | 0.0499 | 1.6789 | 168.1 | 0.0042 | 2.2890 | 123.6 | |||||
| BA–MA | 0.0630 | 1.6329 | 169.3 | 0.0052 | 2.3061 | 122.7 | |||||
| BA–DMA | 0.0721 | 1.6072 | 169.8 | 0.0063 | 2.2809 | 123.9 | |||||
| BA–TMA | 0.0727 | 1.6096 | 179.3 | ||||||||
| PAA–SA | 0.0818 | 1.4577 | 175.8 | 2.5139 | 0.0321 | 1.6415 | 178.9 | 2.6504 | |||
| PAA–H2O | 0.0293/0.0215 | 1.7198/1.8582 | 157.2/143.3 | 2.6758/2.7168 | |||||||
| PAA–NH3 | 0.0499 | 1.6792 | 167.8 | 0.0040 | 2.3140 | 122.9 | |||||
| PAA–MA | 0.0634 | 1.6314 | 169.1 | 0.0051 | 2.3257 | 122.3 | |||||
| PAA–DMA | 0.0724 | 1.6054 | 169.8 | 0.0060 | 2.3136 | 122.8 | |||||
| PAA–TMA | 0.0729 | 1.6071 | 179.2 | ||||||||
| PA–SA | 0.0493 | 1.5675 | 177.3 | 2.5921 | 0.0333 | 1.6269 | 170.0 | 2.6360 | |||
| PA–H2O | 0.0348/0.0122 | 1.6610/2.0343 | 163.4/131.2 | 2.6460/2.7797 | |||||||
| PA–NH3 | 0.0667 | 1.6082 | 174.5 | 2.5221 | |||||||
| PA–MA | 0.0911 | 1.5434 | 175.2 | 2.5175 | |||||||
| PA–DMA | 0.1158 | 1.4880 | 175.5 | 2.5155 | |||||||
| PA–TMA | 0.1264 | 1.4699 | 177.2 | 2.5150 | |||||||
| mPA–SA | 0.0786 | 1.4621 | 175.9 | 2.5159 | 0.0330 | 1.6333 | 178.7 | 2.6420 | |||
| mPA–H2O | 0.0310/0.0210 | 1.7038/1.8633 | 160.0/142.2 | 2.6641/2.7135 | |||||||
| mPA–NH3 | 0.0537 | 1.6626 | 168.7 | 0.0038 | 2.3267 | 121.6 | |||||
| mPA–MA | 0.0684 | 1.6129 | 170.2 | 0.0047 | 2.3529 | 120.4 | |||||
| mPA–DMA | 0.0794 | 1.5824 | 170.9 | 0.0059 | 2.3326 | 121.5 | |||||
| mPA–TMA | 0.0804 | 1.5837 | 178.7 | ||||||||
| PTA–SA | 0.0775 | 1.4661 | 175.9 | 2.5186 | 0.0330 | 1.6320 | 178.7 | 2.6408 | |||
| PTA–H2O | 0.0311/0.0204 | 1.7021/1.8723 | 158.1/141.8 | 2.6634/2.7191 | |||||||
| PTA–NH3 | 0.0541 | 1.6604 | 169.1 | 0.0035 | 2.3457 | 120.9 | |||||
| PTA–MA | 0.0691 | 1.6110 | 170.2 | 0.0048 | 2.3538 | 120.4 | |||||
| PTA–DMA | 0.0803 | 1.5804 | 170.7 | 0.0059 | 2.3267 | 121.6 | |||||
| PTA–TMA | 0.0818 | 1.5792 | 178.8 | ||||||||
Δr(OH) = rdimer − rmonomer, is the OH bond length change in the complexation.
The distance of inter-molecular hydrogen bond.
The angle of inter-molecular hydrogen bond.
The two oxygen atoms contact distance in the hydrogen bond.
Δr(NH) = rdimer − rmonomer, is the NH bond length change in the complexation.
SO–H/O–H/N–H stretching wavenumbers and red shifts (cm−1) of aromatic acid-containing complexes computed at the PW91PW91/6-311++G(3df,3pd) level
| Conformer | SO–H⋯O | O–H⋯O/N | N–H⋯O | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
| Δ |
|
| Δ |
|
| Δ |
| |
| BA–SA | 2222 | 1443 | 84.1 | 3044 | 609 | 37.6 | |||
| BA–H2O | 3077/3372 | 576/451 | 12.9/18.5 | ||||||
| BA–NH3 | 2725 | 928 | 7.3 | 3492 | 213 | 14.8 | |||
| BA–MA | 2513 | 1140 | 43.8 | 3483 | 19 | 16.2 | |||
| BA–DMA | 2369 | 1284 | 52.4 | 3378 | 76 | 194 | |||
| BA–TMA | 2349 | 1303 | 57.3 | ||||||
| PAA–SA | 2284 | 1381 | 69.8 | 3035 | 599 | 47.5 | |||
| PAA–H2O | 3070/3383 | 564/440 | 11.3/14.5 | ||||||
| PAA–NH3 | 2716 | 918 | 43.6 | 3493 | 21 | 13.2 | |||
| PAA–MA | 2498 | 1136 | 58.3 | 3482 | 19 | 14.8 | |||
| PAA–DMA | 2358 | 1276 | 68.3 | 3383 | 71 | 151 | |||
| PAA–TMA | 2341 | 1294 | 75.4 | ||||||
| PA–SA | 2741 | 924 | 49.8 | 3018 | 626 | 34.5 | |||
| PA–H2O | 2982/3042 | 662/21 | 18.2/0.8 | ||||||
| PA–NH3 | 2443 | 1201 | 34.4 | ||||||
| PA–MA | 2114 | 1530 | 41.2 | ||||||
| PA–DMA | 1828 | 1816 | 40.5 | ||||||
| PA–TMA | 1745 | 1899 | 28.8 | ||||||
| mPA–SA | 2313 | 1352 | 83.1 | 3029 | 624 | 29.8 | |||
| mPA–H2O | 3055/3394 | 597/429 | 11.5/17.0 | ||||||
| mPA–NH3 | 2665 | 987 | 28.9 | 3494 | 20 | 14.9 | |||
| mPA–MA | 2432 | 1212 | 37.1 | 3483 | 18 | 16.0 | |||
| mPA–DMA | 2269 | 1383 | 44.5 | 3386 | 68 | 145 | |||
| mPA–TMA | 2241 | 1411 | 48.4 | ||||||
| PTA–SA | 2329 | 1336 | 85.6 | 3027 | 624 | 18.2 | |||
| PTA–H2O | 3052/3404 | 599/419 | 6.9/16.6 | ||||||
| PTA–NH3 | 2658 | 994 | 17.0 | 3495 | 19 | 14.7 | |||
| PTA–MA | 2422 | 1230 | 21.7 | 3483 | 19 | 16.9 | |||
| PTA–DMA | 2253 | 1399 | 25.8 | 3386 | 68 | 156 | |||
| PTA–TMA | 2220 | 1431 | 28.1 | ||||||
Δṽ = ṽmonomer − ṽdimer.
f D/fM stands for the increase of intensity during the complexation.
Fig. 2Atom in molecules (AIM) graphs of aromatic acid-containing complexes obtained at the PW91PW91/6-311++G(3df,3pd) level. Red and yellow balls represent bond critical points (BCPs) and ring critical points (RCPs), respectively.
Atoms in molecules (AIM) parameter analysis for aromatic acid-containing complexes calculated at the PW91PW91/6-311++G(3df,3pd) level. Units: a.u
| Conformer | SO–H⋯O | O–H⋯O/N | N–H⋯O | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Δ |
| ∇2 | Δ |
| ∇2 | Δ |
| ∇2 | |
| BA–SA | 0.0396 | 0.0903 | 0.0704 | 0.0580 | 0.0524 | 0.1066 | |||
| BA–H2O | 0.0371/0.0551 | 0.2656/0.2037 | 0.1059/0.1010 | ||||||
| BA–NH3 | 0.0198 | 0.0597 | 0.0169 | 0.0654 | 0.0147 | 0.0490 | |||
| BA–MA | 0.0116 | 0.0684 | 0.0481 | 0.0621 | 0.0145 | 0.0478 | |||
| BA–DMA | 0.0049 | 0.0740 | 0.0373 | 0.0596 | 0.0153 | 0.0503 | |||
| BA–TMA | 0.0045 | 0.0747 | 0.0319 | ||||||
| PAA–SA | 0.0396 | 0.0871 | 0.0745 | 0.0604 | 0.0519 | 0.1065 | |||
| PAA–H2O | 0.0395/0.0554 | 0.2630/0.1976 | 0.1056/0.0993 | ||||||
| PAA–NH3 | 0.0225 | 0.0598 | 0.0617 | 0.0636 | 0.0141 | 0.0464 | |||
| PAA–MA | 0.0137 | 0.0688 | 0.0477 | 0.0612 | 0.0140 | 0.0458 | |||
| PAA–DMA | 0.0078 | 0.0745 | 0.0365 | 0.0578 | 0.0144 | 0.0470 | |||
| PAA–TMA | 0.0072 | 0.0752 | 0.0313 | ||||||
| PA–SA | 0.0414 | 0.0646 | 0.0971 | 0.0493 | 0.0536 | 0.1066 | |||
| PA–H2O | 0.0756/0.0531 | 0.0531/0.0227 | 0.1039/0.0790 | ||||||
| PA–NH3 | 0.0076 | 0.0714 | 0.0430 | ||||||
| PA–MA | −0.0045 | 0.0856 | 0.0144 | ||||||
| PA–DMA | −0.0164 | 0.0996 | −0.0218 | ||||||
| PA–TMA | −0.0214 | 0.1053 | −0.0412 | ||||||
| mPA–SA | 0.0395 | 0.0858 | 0.0779 | 0.0560 | 0.0529 | 0.1066 | |||
| mPA–H2O | 0.0359/0.0567 | 0.2721/0.1958 | 0.1059/0.0995 | ||||||
| mPA–NH3 | 0.0173 | 0.0622 | 0.0584 | 0.0641 | 0.0138 | 0.0459 | |||
| mPA–MA | 0.0076 | 0.0719 | 0.0423 | 0.0606 | 0.0134 | 0.0443 | |||
| mPA–DMA | 0.0011 | 0.0787 | 0.0286 | 0.0574 | 0.0140 | 0.0460 | |||
| mPA–TMA | 0.0004 | 0.0796 | 0.0230 | ||||||
| PTA–SA | 0.0401 | 0.0849 | 0.0791 | 0.0551 | 0.0531 | 0.1067 | |||
| PTA–H2O | 0.0358/0.0558 | 0.2732/0.1918 | 0.1059/0.0984 | ||||||
| PTA–NH3 | 0.0179 | 0.0626 | 0.0578 | 0.0657 | 0.0134 | 0.0444 | |||
| PTA–MA | 0.0086 | 0.0723 | 0.0416 | 0.0607 | 0.0134 | 0.0442 | |||
| PTA–DMA | 0 | 0.0791 | 0.0277 | 0.0583 | 0.0141 | 0.0466 | |||
| PTA–TMA | −0.0007 | 0.0804 | 0.0214 | ||||||
The change in atomic charge at the H atom.
The electron density at the BCPs.
The Laplacian electron density at the BCPs.
Concentrations (molecule per cm3) of the complexes from dimerization of aromatic acid and common nucleation precursor calculated by the mass-balance equation
| Complexes | Concentrations | Complexes | Concentrations |
|---|---|---|---|
| BA–SA | 2.98 × 10−4 | BA–MA | 8.47 × 10−6 |
| BA–H2O | 1.59 × 10−2 | BA–DMA | 1.19 × 10−5 |
| BA–NH3 | 3.64 × 10−4 | BA–TMA | 2.60 × 10−6 |
| PAA–SA | 2.37 × 102 | PAA–MA | 7.41 × 100 |
| PAA–H2O | 1.44 × 103 | PAA–DMA | 5.20 × 102 |
| PAA–NH3 | 2.31 × 102 | PAA–TMA | 6.85 × 10−1 |
| PA–SA | 9.96 × 10−8 | PA–MA | 8.84 × 10−5 |
| PA–H2O | 6.71 × 10−4 | PA–DMA | 2.06 × 10−4 |
| PA–NH3 | 1.93 × 10−3 | PA–TMA | 5.32 × 10−5 |
| mPA–SA | 2.08 × 10−6 | mPA–MA | 1.70 × 10−7 |
| mPA–H2O | 6.50 × 10−5 | mPA–DMA | 3.35 × 10−7 |
| mPA–NH3 | 5.23 × 10−6 | mPA–TMA | 3.15 × 10−8 |
| PTA–SA | 5.50 × 10−5 | PTA–MA | 4.51 × 10−6 |
| PTA–H2O | 2.16 × 10−3 | PTA–DMA | 6.33 × 10−6 |
| PTA–NH3 | 1.94 × 10−4 | PTA–TMA | 3.17 × 10−6 |