Literature DB >> 26327507

ABCluster: the artificial bee colony algorithm for cluster global optimization.

Jun Zhang1, Michael Dolg.   

Abstract

Global optimization of cluster geometries is of fundamental importance in chemistry and an interesting problem in applied mathematics. In this work, we introduce a relatively new swarm intelligence algorithm, i.e. the artificial bee colony (ABC) algorithm proposed in 2005, to this field. It is inspired by the foraging behavior of a bee colony, and only three parameters are needed to control it. We applied it to several potential functions of quite different nature, i.e., the Coulomb-Born-Mayer, Lennard-Jones, Morse, Z and Gupta potentials. The benchmarks reveal that for long-ranged potentials the ABC algorithm is very efficient in locating the global minimum, while for short-ranged ones it is sometimes trapped into a local minimum funnel on a potential energy surface of large clusters. We have released an efficient, user-friendly, and free program "ABCluster" to realize the ABC algorithm. It is a black-box program for non-experts as well as experts and might become a useful tool for chemists to study clusters.

Mesh:

Year:  2015        PMID: 26327507     DOI: 10.1039/c5cp04060d

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  28 in total

1.  Unexpected quenching effect on new particle formation from the atmospheric reaction of methanol with SO3.

Authors:  Ling Liu; Jie Zhong; Hanna Vehkamäki; Theo Kurtén; Lin Du; Xiuhui Zhang; Joseph S Francisco; Xiao Cheng Zeng
Journal:  Proc Natl Acad Sci U S A       Date:  2019-11-25       Impact factor: 11.205

2.  Probing structure, thermochemistry, electron affinity, and magnetic moment of thulium-doped silicon clusters TmSi n (n = 3-10) and their anions with density functional theory.

Authors:  Xintao Huang; Jucai Yang
Journal:  J Mol Model       Date:  2017-12-26       Impact factor: 1.810

3.  Rapid sulfuric acid-dimethylamine nucleation enhanced by nitric acid in polluted regions.

Authors:  Ling Liu; Fangqun Yu; Lin Du; Zhi Yang; Joseph S Francisco; Xiuhui Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2021-08-31       Impact factor: 11.205

4.  Experimental and Theoretical Study on the Enhancement of Alkanolamines on Sulfuric Acid Nucleation.

Authors:  Sandra K W Fomete; Jack S Johnson; Nanna Myllys; Coty N Jen
Journal:  J Phys Chem A       Date:  2022-06-21       Impact factor: 2.944

5.  σ-Aromaticity in planar pentacoordinate aluminium and gallium clusters.

Authors:  Amlan J Kalita; Kangkan Sarmah; Farnaz Yashmin; Ritam R Borah; Indrani Baruah; Rinu P Deka; Ankur K Guha
Journal:  Sci Rep       Date:  2022-06-16       Impact factor: 4.996

6.  Reaction of Ta3 - Clusters with Molecular Nitrogen: A Mechanism Investigation.

Authors:  Xiaoli Sun; Xuri Huang
Journal:  ACS Omega       Date:  2022-06-21

7.  Density-functional study of the structures and properties of holmium-doped silicon clusters HoSi n (n = 3-9) and their anions.

Authors:  Liyuan Hou; Jucai Yang; Yuming Liu
Journal:  J Mol Model       Date:  2017-03-13       Impact factor: 1.810

8.  Structural and electronic properties of nanosize semiconductor HfSin0/-/2- (n = 6-16) material: a double-hybrid density functional theory investigation.

Authors:  Caixia Dong; Jucai Yang; Jun Lu
Journal:  J Mol Model       Date:  2020-03-26       Impact factor: 1.810

9.  Atmospheric implication of synergy in methanesulfonic acid-base trimers: a theoretical investigation.

Authors:  Dongping Chen; Weina Wang; Danfeng Li; Wenliang Wang
Journal:  RSC Adv       Date:  2020-01-31       Impact factor: 4.036

10.  Combining Machine Learning and Computational Chemistry for Predictive Insights Into Chemical Systems.

Authors:  John A Keith; Valentin Vassilev-Galindo; Bingqing Cheng; Stefan Chmiela; Michael Gastegger; Klaus-Robert Müller; Alexandre Tkatchenko
Journal:  Chem Rev       Date:  2021-07-07       Impact factor: 60.622

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