| Literature DB >> 35535334 |
Saeedeh Salimi1,2, Saman Sargazi2, Behrouz Mollashahi3, Milad Heidari Nia2, Shekoufeh Mirinejad2, Mahdi Majidpour1,2, Marzieh Ghasemi4,5, Sara Sargazi6.
Abstract
It has been established that microRNAs (miRNAs) are involved in the regulation of immune responses and serve as biomarkers of inflammatory diseases as well as recurrent spontaneous miscarriage (RSM). Herein, we aimed to study the relationship between three functional miR146a gene polymorphisms with idiopathic RSM (IRSM) susceptibility. We recruited 161 patients with IRSM and 177 healthy women with at least one live birth and without a history of abortion. Genotyping was performed using RFLP-PCR and ARMS-PCR methods. We found that the rs6864584 T/C decreased the risk of IRSM under dominant TT+TC vs. CC (OR = 0.029) and allelic C vs. T (OR = 0.028) contrast models. Regarding rs2961920 A/C and rs57095329 A/G polymorphisms, the enhanced risk of IRSM was observed under different genetic contrasted models, including the codominant CC vs. AA (OR = 2.81 for rs2961920) and codominant GG vs. AA (OR = 2.36 for rs57095329). After applying a Bonferroni correction, haplotype analysis revealed a 51% decreased risk of IRSM regarding the ACA genotype combination. This is the first study reporting that miR146a rs57095329 A/G, rs2961920A/C, and rs6864584 T/C polymorphisms are associated with the risk of IRSM in a southern Iranian population. Performing replicated case-control studies on other ethnicities is warranted to outline the precise effects of the studied variants on the risk of gestational trophoblastic disorders.Entities:
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Year: 2022 PMID: 35535334 PMCID: PMC9078850 DOI: 10.1155/2022/1495082
Source DB: PubMed Journal: Dis Markers ISSN: 0278-0240 Impact factor: 3.464
The primers used for genotyping of miR146a gene polymorphisms.
| SNP | Primers | Sequence (5′ to 3′) | Annealing temperature | Length of PCR product (bp) | Restriction enzyme |
|---|---|---|---|---|---|
| rs2961920 C/A | F (C-allele) | GTGTATAAGGAAGCCTCACGC | 58°C | C:221 |
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| F (A-allele) | GTGTATAAGGAAGCCTCACGA | A:221 | |||
| R (common) | TGAACACACGGACATCTGAC | ||||
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| rs6864584 C/T | F | CGGAGAGTACAGACAGGAAGC | 59.5°C | T: 300 |
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| R | TAGATCCCTCCTCGGCACAGC | C: 148 + 152 | |||
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| rs57095329 A/G | F (A-allele) | CGGGACTGCGGAGAGTACGGA | 61°C | A:153 |
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| F (G-allele) | CGGGACTGCGGAGAGTACGGG | G:153 | |||
| R (common) | TTGGAGCACGTGTCAGGAGCAG | ||||
F: forward; R: reverse; PCR: polymerase chain reaction; SNP: single-nucleotide polymorphism.
Figure 1Gel photograph of PCR amplification products of the miR146a (a) rs2961920A/C, (b) rs6864584 C/T, and (c) rs57095329 A/G polymorphisms.
Genotypic and allelic distribution of miR146a polymorphisms in IRSM patients and controls.
| SNP | Type | IRSM (%) | Control (%) | Genetic model | OR (95% CI) |
|
|---|---|---|---|---|---|---|
| rs2961920 A/C | AA | 58 (36.0) | 73 (41.2) | Codominant AC vs. AA | 1.02 (0.64-1.62) | 0.921 |
| AC | 74 (46.0) | 91 (51.5) | Codominant CC vs. AA | 2.81 (1.34-5.88) | 0.005 | |
| CC | 29 (18.0) | 13 (7.3) | Dominant CC+AC vs. AA | 1.25 (0.80-1.93) | 0.325 | |
| HWE | 0.865 | 0.073 | Recessive CC vs. AC+AA | 2.77 (1.39-5.54) | 0.003 | |
| A | 190 (59.0) | 237 (66.9) | Overdominant AC vs. AA+CC | 0.80 (0.52-1.23) | 0.317 | |
| Allelic | 1 [reference] | |||||
| C | 132 (41.0) | 117 (33.1) | Allelic | 1.41 (1.03-1.93) | 0.032 | |
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| ||||||
| rs6864584 C/T | TT | 91 (56.5) | 78 (44.1) | Codominant CT vs. TT | 0.63 (0.40-0.99) | 0.056 |
| TC | 61 (37.9) | 83 (46.9) | Codominant CC vs. TT | 0.48 (0.20-1.15) | 0.146 | |
| CC | 9 (5.6) | 16 (9.0) | Dominant TT+TC vs. CC | 0.61 (0.39-0.93) | 0.029 | |
| HWE | 0.768 | 0.358 | Recessive CC vs. TC+TT | 0.60 (0.26-1.39) | 0.316 | |
| Overdominant TC vs. TT+CC | 0.69 (0.44-1.07) | 0.118 | ||||
| T | 243 (75.5) | 239 (67.5) | Allelic | 1 [reference] | ||
| C | 79 (24.5) | 115 (32.5) | Allelic | 0.68 (0.48-0.95) | 0.028 | |
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| rs57095329 A/G | AA | 45 (27.9) | 76 (42.9) | Codominant AG vs. AA | 1.87 (1.17-2.99) | 0.013 |
| AG | 95 (59.0) | 86 (48.6) | Codominant GG vs. AA | 2.36 (1.11-5.05) | 0.039 | |
| GG | 21 (13.1) | 15 (8.5) | Dominant AA+AG vs. GG | 1.94 (1.23-3.06) | 0.006 | |
| HWE | 0.008 | 0.171 | Recessive GG vs. AG+AA | 1.62 (0.80-3.26) | 0.237 | |
| Overdominant AG vs. AA+GG | 1.52 (0.99-2.34) | 0.070 | ||||
| A | 185 (57.5) | 238 (67.2) | Allelic | 1 [reference] | ||
| G | 137 (42.5) | 116 (32.8) | Allelic | 1.52 (1.11-2.08) | 0.011 | |
SNP: single-nucleotide polymorphism; CI: confidence interval; OR: odds ratio; IRSM: idiopathic recurrent spontaneous miscarriage; HWE: Hardy-Weinberg equilibrium. p < 0.05 was considered statistically significant.
Interaction analysis of miR146a polymorphisms on IRSM risk.
| rs2961920 A/C | rs6864584 C/T | rs57095329 A/G | IRSM (%) | Control (%) | OR (95% CI) |
|
|---|---|---|---|---|---|---|
| AC | TC | AG | 20 (12.4) | 29 (16.4) | 1 [reference] | |
| AA | TC | AA | 7 (4.3) | 20 (11.3) | 0.51 (0.18-1.43) | 0.194 |
| AA | TC | AG | 12 (7.5) | 13 (7.3) | 1.34 (0.51-3.53) | 0.555 |
| AA | TT | AA | 12 (7.50) | 17 (7.9) | 1.02 (0.40-2.60) | 0.961 |
| AA | TT | AG | 20 (12.4) | 13 (7.3) | 2.23 (0.91-5.49) | 0.079 |
| AA | TT | GG | 2 (1.2) | 5 (2.8) | 0.58 (0.10-3.29) | 0.535 |
| AC | CC | AG | 3 (1.9) | 4 (2.3) | 1.09 (0.22-5.39) | 0.918 |
| AC | TC | AA | 4 (2.5) | 12 (6.80) | 0.48 (0.14-1.72) | 0.255 |
| AC | TT | AA | 11 (6.8) | 18 (10.2) | 0.89 (0.35-2.27) | 0.801 |
| AC | TC | AG | 21 (13.0) | 18 (10.2) | 1.69 (0.72-3.95) | 0.224 |
| AC | TT | GG | 9 (5.6) | 3 (1.7) | 4.35 (1.05-18.09) | 0.034 |
| CC | TC | AG | 10 (6.2) | 4 (2.3) | 3.63 (1.00-13.19) | 0.043 |
| CC | TT | AA | 6 (3.7) | 4 (2.3) | 2.17 (0.54-8.71) | 0.265 |
| CC | TT | AG | 8 (5.0) | 2 (1.1) | 5.80 (1.11-30.23) | 0.024 |
OR: odds ratio; CI: confidence interval; IRSM: idiopathic recurrent spontaneous miscarriage. ∗p < 0.017 was considered statistically significant after Bonferroni correction.
Haplotype analysis of miR146a polymorphisms in women with IRSM and healthy women.
| rs2961920 A/C | rs6864584 C/T | rs57095329 A/G | IRSM | Control | OR (95% CI) |
|
|---|---|---|---|---|---|---|
| A | T | T | 90 (27.9) | 110 (31.2) | 1 [reference] | |
| A | C | A | 24 (7.5) | 60 (17.1) | 0.49 (0.28-0.85) | 0.010 |
| A | C | G | 21 (6.5) | 19 (5.3) | 1.35 (0.68-2.67) | 0.385 |
| A | T | G | 55 (17.1) | 47 (13.4) | 1.43 (0.89-2.31) | 0.142 |
| C | C | A | 13 (3.9) | 11 (3.0) | 1.44 (0.62-3.38) | 0.395 |
| C | C | G | 21 (6.6) | 25 (7.1) | 1.03 (0.54-1.95) | 0.936 |
| C | T | A | 58 (18.1) | 57 (16.0) | 1.24 (0.78-1.97) | 0.352 |
| C | T | G | 40 (12.4) | 25 (7.0) | 1.96 (1.10-3.47) | 0.020 |
OR: odds ratio; CI: confidence interval; IRSM: idiopathic recurrent spontaneous miscarriage. ∗p < 0.017 was considered statistically significant after the Bonferroni correction.
Figure 2LD analysis of rs2961920A/C, rs6864584 C/T, and rs57095329 A/G polymorphisms. No strong linkage disequilibrium was observed between the studied SNPs.
Figure 3Illustration of sequence conservation by WebLogo around (a) rs2961920A/C, (b) rs6864584 C/T, and (c) rs57095329 A/G SNP locus; human DNA sequences around these loci are presented at the top. The high nucleotides' symbols show more conservation, while the small and more diverse nucleotides indicate less conservation.