Literature DB >> 35524053

Understanding and Manipulating Assembly Line Biosynthesis by Heterologous Expression in Streptomyces.

Lihan Zhang1, Takayoshi Awakawa2,3, Ikuro Abe4,5.   

Abstract

Assembly line enzymes, including polyketide synthases and nonribosomal peptide synthetases, play central roles in the construction of complex natural products. Due to the sequential biochemistry processed in each domain, the domain architecture of the assembly line enzymes strictly correlates with the product molecule. This colinearity makes assembly line enzymes an ideal target for rational reprogramming. Although many of the past engineering attempts suffered from decreased product yield, recent advancements in the bioinformatic analysis and engineering design now provide new opportunity to work on these modular megaenzymes. This chapter describes the methods for analyzing and engineering the assembly line enzymes, including module and domain analysis needed for designing the engineering of assembly line biosynthesis, and the expression vector construction with an example of two-vector heterologous expression system in Streptomyces.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Assembly line engineering; Bioinformatic analysis; Biosynthetic pathway; Heterologous expression; Streptomyces

Mesh:

Substances:

Year:  2022        PMID: 35524053     DOI: 10.1007/978-1-0716-2273-5_12

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  46 in total

Review 1.  Genetic engineering of modular PKSs: from combinatorial biosynthesis to synthetic biology.

Authors:  Kira J Weissman
Journal:  Nat Prod Rep       Date:  2016-02       Impact factor: 13.423

Review 2.  Assembly-line enzymology for polyketide and nonribosomal Peptide antibiotics: logic, machinery, and mechanisms.

Authors:  Michael A Fischbach; Christopher T Walsh
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

3.  Modification and de novo design of non-ribosomal peptide synthetases using specific assembly points within condensation domains.

Authors:  Kenan A J Bozhüyük; Annabell Linck; Andreas Tietze; Janik Kranz; Frank Wesche; Sarah Nowak; Florian Fleischhacker; Yan-Ni Shi; Peter Grün; Helge B Bode
Journal:  Nat Chem       Date:  2019-06-10       Impact factor: 24.427

Review 4.  Computer-aided re-engineering of nonribosomal peptide and polyketide biosynthetic assembly lines.

Authors:  Mohammad Alanjary; Carolina Cano-Prieto; Harald Gross; Marnix H Medema
Journal:  Nat Prod Rep       Date:  2019-07-01       Impact factor: 13.423

Review 5.  Nonribosomal Peptide Synthesis-Principles and Prospects.

Authors:  Roderich D Süssmuth; Andi Mainz
Journal:  Angew Chem Int Ed Engl       Date:  2017-03-21       Impact factor: 15.336

6.  De novo design and engineering of non-ribosomal peptide synthetases.

Authors:  Kenan A J Bozhüyük; Florian Fleischhacker; Annabell Linck; Frank Wesche; Andreas Tietze; Claus-Peter Niesert; Helge B Bode
Journal:  Nat Chem       Date:  2017-12-11       Impact factor: 24.427

7.  Characterization of Giant Modular PKSs Provides Insight into Genetic Mechanism for Structural Diversification of Aminopolyol Polyketides.

Authors:  Lihan Zhang; Takuya Hashimoto; Bin Qin; Junko Hashimoto; Ikuko Kozone; Teppei Kawahara; Masahiro Okada; Takayoshi Awakawa; Takuya Ito; Yoshinori Asakawa; Masashi Ueki; Shunji Takahashi; Hiroyuki Osada; Toshiyuki Wakimoto; Haruo Ikeda; Kazuo Shin-Ya; Ikuro Abe
Journal:  Angew Chem Int Ed Engl       Date:  2017-01-11       Impact factor: 15.336

8.  Polyketide Synthase Modules Redefined.

Authors:  Adrian T Keatinge-Clay
Journal:  Angew Chem Int Ed Engl       Date:  2017-03-21       Impact factor: 15.336

Review 9.  The biosynthetic logic of polyketide diversity.

Authors:  Christian Hertweck
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

10.  Evolution and Diversity of Assembly-Line Polyketide Synthases.

Authors:  Aleksandra Nivina; Kai P Yuet; Jake Hsu; Chaitan Khosla
Journal:  Chem Rev       Date:  2019-12-15       Impact factor: 60.622

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