Literature DB >> 35519236

Image-to-image translation of label-free molecular vibrational images for a histopathological review using the UNet+/seg-cGAN model.

Yunjie He1, Jiasong Li1, Steven Shen2, Kai Liu1, Kelvin K Wong1,3, Tiancheng He1, Stephen T C Wong1,2,3.   

Abstract

Translating images generated by label-free microscopy imaging, such as Coherent Anti-Stokes Raman Scattering (CARS), into more familiar clinical presentations of histopathological images will help the adoption of real-time, spectrally resolved label-free imaging in clinical diagnosis. Generative adversarial networks (GAN) have made great progress in image generation and translation, but have been criticized for lacking precision. In particular, GAN has often misinterpreted image information and identified incorrect content categories during image translation of microscopy scans. To alleviate this problem, we developed a new Pix2pix GAN model that simultaneously learns classifying contents in the images from a segmentation dataset during the image translation training. Our model integrates UNet+ with seg-cGAN, conditional generative adversarial networks with partial regularization of segmentation. Technical innovations of the UNet+/seg-cGAN model include: (1) replacing UNet with UNet+ as the Pix2pix cGAN's generator to enhance pattern extraction and richness of the gradient, and (2) applying the partial regularization strategy to train a part of the generator network as the segmentation sub-model on a separate segmentation dataset, thus enabling the model to identify correct content categories during image translation. The quality of histopathological-like images generated based on label-free CARS images has been improved significantly.
© 2022 Optica Publishing Group under the terms of the Optica Open Access Publishing Agreement.

Entities:  

Year:  2022        PMID: 35519236      PMCID: PMC9045908          DOI: 10.1364/BOE.445319

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.562


  29 in total

1.  Semi-automatic construction of reference standards for evaluation of image registration.

Authors:  K Murphy; B van Ginneken; S Klein; M Staring; B J de Hoop; M A Viergever; J P W Pluim
Journal:  Med Image Anal       Date:  2010-08-03       Impact factor: 8.545

Review 2.  Coherent anti-stokes Raman scattering microscopy: a biological review.

Authors:  Luis G Rodriguez; Stephen J Lockett; Gary R Holtom
Journal:  Cytometry A       Date:  2006-08-01       Impact factor: 4.355

3.  Three-color multiplex CARS for fast imaging and microspectroscopy in the entire CHn stretching vibrational region.

Authors:  Jae Yong Lee; Se-Hwa Kim; Dae Won Moon; Eun Seong Lee
Journal:  Opt Express       Date:  2009-12-07       Impact factor: 3.894

Review 4.  The wonderful colors of the hematoxylin-eosin stain in diagnostic surgical pathology.

Authors:  John K C Chan
Journal:  Int J Surg Pathol       Date:  2014-01-09       Impact factor: 1.271

Review 5.  Fourier transform infrared spectroscopy as a tool to characterize molecular composition and stress response in foodborne pathogenic bacteria.

Authors:  A Alvarez-Ordóñez; D J M Mouwen; M López; M Prieto
Journal:  J Microbiol Methods       Date:  2011-01-21       Impact factor: 2.363

6.  SegNet: A Deep Convolutional Encoder-Decoder Architecture for Image Segmentation.

Authors:  Vijay Badrinarayanan; Alex Kendall; Roberto Cipolla
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2017-01-02       Impact factor: 6.226

7.  Stain-less staining for computed histopathology.

Authors:  David Mayerich; Michael J Walsh; Andre Kadjacsy-Balla; Partha S Ray; Stephen M Hewitt; Rohit Bhargava
Journal:  Technology (Singap World Sci)       Date:  2015-03

8.  Non-linear optical microscopy of kidney tumours.

Authors:  Roberta Galli; Valdas Sablinskas; Darius Dasevicius; Arvydas Laurinavicius; Feliksas Jankevicius; Edmund Koch; Gerald Steiner
Journal:  J Biophotonics       Date:  2013-01-31       Impact factor: 3.207

9.  Chemically-selective imaging of brain structures with CARS microscopy.

Authors:  Conor L Evans; Xiaoyin Xu; Santosh Kesari; X Sunney Xie; Steven T C Wong; Geoffrey S Young
Journal:  Opt Express       Date:  2007-09-17       Impact factor: 3.894

10.  Computational tissue staining of non-linear multimodal imaging using supervised and unsupervised deep learning.

Authors:  Pranita Pradhan; Tobias Meyer; Michael Vieth; Andreas Stallmach; Maximilian Waldner; Michael Schmitt; Juergen Popp; Thomas Bocklitz
Journal:  Biomed Opt Express       Date:  2021-03-23       Impact factor: 3.732

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  1 in total

1.  LDADN: a local discriminant auxiliary disentangled network for key-region-guided chest X-ray image synthesis augmented in pneumoconiosis detection.

Authors:  Li Fan; Zelin Wang; Jianguang Zhou
Journal:  Biomed Opt Express       Date:  2022-07-27       Impact factor: 3.562

  1 in total

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