Literature DB >> 26029735

Stain-less staining for computed histopathology.

David Mayerich1, Michael J Walsh2, Andre Kadjacsy-Balla3, Partha S Ray4, Stephen M Hewitt5, Rohit Bhargava6.   

Abstract

Dyes such as hematoxylin and eosin (H&E) and immunohistochemical stains have been increasingly used to visualize tissue composition in research and clinical practice. We present an alternative approach to obtain the same information using stain-free chemical imaging. Relying on Fourier transform infrared (FT-IR) spectroscopic imaging and computation, stainless computed histopathology can enable a rapid, digital, quantitative and non-perturbing visualization of morphology and multiple molecular epitopes simultaneously in a variety of research and clinical pathology applications.

Entities:  

Year:  2015        PMID: 26029735      PMCID: PMC4445956          DOI: 10.1142/S2339547815200010

Source DB:  PubMed          Journal:  Technology (Singap World Sci)


  13 in total

Review 1.  A decade of vibrational micro-spectroscopy of human cells and tissue (1994-2004).

Authors:  M Diem; M Romeo; S Boydston-White; M Miljkovic; C Matthaus
Journal:  Analyst       Date:  2004-08-27       Impact factor: 4.616

Review 2.  Quantification of immunohistochemistry--issues concerning methods, utility and semiquantitative assessment II.

Authors:  C R Taylor; R M Levenson
Journal:  Histopathology       Date:  2006-10       Impact factor: 5.087

3.  Infrared spectroscopic imaging for histopathologic recognition.

Authors:  Daniel C Fernandez; Rohit Bhargava; Stephen M Hewitt; Ira W Levin
Journal:  Nat Biotechnol       Date:  2005-03-27       Impact factor: 54.908

Review 4.  Metabolic fingerprinting in disease diagnosis: biomedical applications of infrared and Raman spectroscopy.

Authors:  David I Ellis; Royston Goodacre
Journal:  Analyst       Date:  2006-04-25       Impact factor: 4.616

5.  Recommendations for improved standardization of immunohistochemistry.

Authors:  Neal S Goldstein; Stephen M Hewitt; Clive R Taylor; Hadi Yaziji; David G Hicks
Journal:  Appl Immunohistochem Mol Morphol       Date:  2007-06

6.  Towards a practical Fourier transform infrared chemical imaging protocol for cancer histopathology.

Authors:  Rohit Bhargava
Journal:  Anal Bioanal Chem       Date:  2007-09-05       Impact factor: 4.142

7.  Validation of tissue microarray technology in breast carcinoma.

Authors:  R L Camp; L A Charette; D L Rimm
Journal:  Lab Invest       Date:  2000-12       Impact factor: 5.662

Review 8.  Infrared spectroscopic imaging: the next generation.

Authors:  Rohit Bhargava
Journal:  Appl Spectrosc       Date:  2012-10       Impact factor: 2.388

9.  On the importance of image formation optics in the design of infrared spectroscopic imaging systems.

Authors:  David Mayerich; Thomas van Dijk; Michael J Walsh; Matthew V Schulmerich; P Scott Carney; Rohit Bhargava
Journal:  Analyst       Date:  2014-08-21       Impact factor: 4.616

10.  Using Fourier transform IR spectroscopy to analyze biological materials.

Authors:  Matthew J Baker; Júlio Trevisan; Paul Bassan; Rohit Bhargava; Holly J Butler; Konrad M Dorling; Peter R Fielden; Simon W Fogarty; Nigel J Fullwood; Kelly A Heys; Caryn Hughes; Peter Lasch; Pierre L Martin-Hirsch; Blessing Obinaju; Ganesh D Sockalingum; Josep Sulé-Suso; Rebecca J Strong; Michael J Walsh; Bayden R Wood; Peter Gardner; Francis L Martin
Journal:  Nat Protoc       Date:  2014-07-03       Impact factor: 13.491

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  20 in total

1.  Selecting optimal features from Fourier transform infrared spectroscopy for discrete-frequency imaging.

Authors:  Rupali Mankar; Michael J Walsh; Rohit Bhargava; Saurabh Prasad; David Mayerich
Journal:  Analyst       Date:  2018-02-26       Impact factor: 4.616

2.  SIproc: an open-source biomedical data processing platform for large hyperspectral images.

Authors:  Sebastian Berisha; Shengyuan Chang; Sam Saki; Davar Daeinejad; Ziqi He; Rupali Mankar; David Mayerich
Journal:  Analyst       Date:  2017-04-10       Impact factor: 4.616

3.  A label-free approach by infrared spectroscopic imaging for interrogating the biochemistry of diabetic nephropathy progression.

Authors:  Vishal K Varma; Andre Kajdacsy-Balla; Sanjeev K Akkina; Suman Setty; Michael J Walsh
Journal:  Kidney Int       Date:  2016-02-02       Impact factor: 10.612

4.  Label-free hematology analysis using deep-ultraviolet microscopy.

Authors:  Ashkan Ojaghi; Gabriel Carrazana; Christina Caruso; Asad Abbas; David R Myers; Wilbur A Lam; Francisco E Robles
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-19       Impact factor: 11.205

5.  Accurate and interpretable classification of microspectroscopy pixels using artificial neural networks.

Authors:  Petru Manescu; Young Jong Lee; Charles Camp; Marcus Cicerone; Mary Brady; Peter Bajcsy
Journal:  Med Image Anal       Date:  2017-01-06       Impact factor: 8.545

Review 6.  Infrared Spectroscopic Imaging Advances as an Analytical Technology for Biomedical Sciences.

Authors:  Tomasz P Wrobel; Rohit Bhargava
Journal:  Anal Chem       Date:  2018-02-06       Impact factor: 6.986

7.  Development of a practical spatial-spectral analysis protocol for breast histopathology using Fourier transform infrared spectroscopic imaging.

Authors:  F Nell Pounder; Rohith K Reddy; Rohit Bhargava
Journal:  Faraday Discuss       Date:  2016-06-23       Impact factor: 4.008

Review 8.  Emerging Themes in Image Informatics and Molecular Analysis for Digital Pathology.

Authors:  Rohit Bhargava; Anant Madabhushi
Journal:  Annu Rev Biomed Eng       Date:  2016-07-11       Impact factor: 9.590

9.  Vibrational spectroscopy and imaging for concurrent cellular trafficking of co-localized doxorubicin and deuterated phospholipid vesicles.

Authors:  S K Misra; P Mukherjee; A Ohoka; A S Schwartz-Duval; S Tiwari; R Bhargava; D Pan
Journal:  Nanoscale       Date:  2016-02-07       Impact factor: 7.790

10.  Multimodal Chemical Analysis of the Brain by High Mass Resolution Mass Spectrometry and Infrared Spectroscopic Imaging.

Authors:  Elizabeth K Neumann; Troy J Comi; Nicolas Spegazzini; Jennifer W Mitchell; Stanislav S Rubakhin; Martha U Gillette; Rohit Bhargava; Jonathan V Sweedler
Journal:  Anal Chem       Date:  2018-09-19       Impact factor: 6.986

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