Literature DB >> 33095870

Database resources of the National Center for Biotechnology Information.

Eric W Sayers1, Jeffrey Beck1, Evan E Bolton1, Devon Bourexis1, James R Brister1, Kathi Canese1, Donald C Comeau1, Kathryn Funk1, Sunghwan Kim1, William Klimke1, Aron Marchler-Bauer1, Melissa Landrum1, Stacy Lathrop1, Zhiyong Lu1, Thomas L Madden1, Nuala O'Leary1, Lon Phan1, Sanjida H Rangwala1, Valerie A Schneider1, Yuri Skripchenko1, Jiyao Wang1, Jian Ye1, Barton W Trawick1, Kim D Pruitt1, Stephen T Sherry1.   

Abstract

The National Center for Biotechnology Information (NCBI) provides a large suite of online resources for biological information and data, including the GenBank® nucleic acid sequence database and the PubMed® database of citations and abstracts published in life science journals. The Entrez system provides search and retrieval operations for most of these data from 34 distinct databases. The E-utilities serve as the programming interface for the Entrez system. Custom implementations of the BLAST program provide sequence-based searching of many specialized datasets. New resources released in the past year include a new PubMed interface and NCBI datasets. Additional resources that were updated in the past year include PMC, Bookshelf, Genome Data Viewer, SRA, ClinVar, dbSNP, dbVar, Pathogen Detection, BLAST, Primer-BLAST, IgBLAST, iCn3D and PubChem. All of these resources can be accessed through the NCBI home page at https://www.ncbi.nlm.nih.gov. Published by Oxford University Press on behalf of Nucleic Acids Research 2020.

Entities:  

Year:  2021        PMID: 33095870     DOI: 10.1093/nar/gkaa892

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  117 in total

1.  Ornithinimicrobium sediminis sp. nov., a novel actinobacterium isolated from a saline lake sediment.

Authors:  Lei Gao; Bao-Zhu Fang; Yong-Hong Liu; Li Li; Yin Huang; Jian-Yu Jiao; André Antunes; Wen-Jun Li
Journal:  Arch Microbiol       Date:  2022-04-23       Impact factor: 2.552

2.  Data Mining, Quality and Management in the Life Sciences.

Authors:  Amonida Zadissa; Rolf Apweiler
Journal:  Methods Mol Biol       Date:  2022

3.  Isolation and molecular identification of native As-resistant bacteria: As(III) and As(V) removal capacity and possible mechanism of detoxification.

Authors:  U E Rodríguez-Castrejón; A H Serafin-Muñoz; A Alvarez-Vargas; G Cruz-Jímenez; B Noriega-Luna
Journal:  Arch Microbiol       Date:  2022-02-23       Impact factor: 2.552

4.  Structural basis of target DNA recognition by CRISPR-Cas12k for RNA-guided DNA transposition.

Authors:  Renjian Xiao; Shukun Wang; Ruijie Han; Zhuang Li; Clinton Gabel; Indranil Arun Mukherjee; Leifu Chang
Journal:  Mol Cell       Date:  2021-08-26       Impact factor: 17.970

5.  Coronavirus GenBrowser for monitoring the transmission and evolution of SARS-CoV-2.

Authors:  Dalang Yu; Xiao Yang; Bixia Tang; Yi-Hsuan Pan; Jianing Yang; Guangya Duan; Junwei Zhu; Zi-Qian Hao; Hailong Mu; Long Dai; Wangjie Hu; Mochen Zhang; Ying Cui; Tong Jin; Cui-Ping Li; Lina Ma; Xiao Su; Guoqing Zhang; Wenming Zhao; Haipeng Li
Journal:  Brief Bioinform       Date:  2022-03-10       Impact factor: 11.622

6.  Isolation and whole-genome sequencing of a novel aviadenovirus from owls in Japan.

Authors:  Hiroko Kobayashi; Yu Uchida; Kan Fujino; Masayuki Horie; Eisuke Umezawa; Naoyuki Aihara; Junichi Kamiie; Hiroshi Shimoda; Ken Maeda; Yumi Une; Satoshi Taharaguchi
Journal:  Arch Virol       Date:  2022-02-03       Impact factor: 2.574

Review 7.  Optimization of metabolomic data processing using NOREVA.

Authors:  Jianbo Fu; Ying Zhang; Yunxia Wang; Hongning Zhang; Jin Liu; Jing Tang; Qingxia Yang; Huaicheng Sun; Wenqi Qiu; Yinghui Ma; Zhaorong Li; Mingyue Zheng; Feng Zhu
Journal:  Nat Protoc       Date:  2021-12-24       Impact factor: 13.491

8.  VirtualTaste: a web server for the prediction of organoleptic properties of chemical compounds.

Authors:  Franziska Fritz; Robert Preissner; Priyanka Banerjee
Journal:  Nucleic Acids Res       Date:  2021-07-02       Impact factor: 16.971

9.  Assessment of Oral Vancomycin-Induced Alterations in Gut Bacterial Microbiota and Metabolome of Healthy Men.

Authors:  Andrew HyoungJin Kim; Yujin Lee; Eunwoo Kim; Sang Chun Ji; Jae-Yong Chung; Joo-Youn Cho
Journal:  Front Cell Infect Microbiol       Date:  2021-05-27       Impact factor: 5.293

10.  De Novo Transcriptome Meta-Assembly of the Mixotrophic Freshwater Microalga Euglena gracilis.

Authors:  Javier Cordoba; Emilie Perez; Mick Van Vlierberghe; Amandine R Bertrand; Valérian Lupo; Pierre Cardol; Denis Baurain
Journal:  Genes (Basel)       Date:  2021-05-29       Impact factor: 4.096

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