Literature DB >> 35502315

Inferring Morphology of a Neuron from In Vivo LFP Data.

Ziao Chen1, Dan Dopp1, Drew B Headley2, Satish S Nair1.   

Abstract

We propose a computational pipeline that uses biophysical modeling and sequential neural posterior estimation algorithm to infer the position and morphology of single neurons using multi-electrode in vivo extracellular voltage recordings. In this inverse modeling scheme, we designed a generic biophysical single neuron model with stylized morphology that had adjustable parameters for the dimensions of the soma, basal and apical dendrites, and their location and orientations relative to the multi-electrode probe. Preliminary results indicate that the proposed methodology can infer up to eight neuronal parameters well. We highlight the issues involved in the development of the novel pipeline and areas for further improvement.

Entities:  

Year:  2021        PMID: 35502315      PMCID: PMC9040040          DOI: 10.1109/ner49283.2021.9441161

Source DB:  PubMed          Journal:  Int IEEE EMBS Conf Neural Eng        ISSN: 1948-3546


  5 in total

Review 1.  Is realistic neuronal modeling realistic?

Authors:  Mara Almog; Alon Korngreen
Journal:  J Neurophysiol       Date:  2016-08-17       Impact factor: 2.714

2.  Fully integrated silicon probes for high-density recording of neural activity.

Authors:  James J Jun; Nicholas A Steinmetz; Joshua H Siegle; Daniel J Denman; Marius Bauza; Brian Barbarits; Albert K Lee; Costas A Anastassiou; Alexandru Andrei; Çağatay Aydın; Mladen Barbic; Timothy J Blanche; Vincent Bonin; João Couto; Barundeb Dutta; Sergey L Gratiy; Diego A Gutnisky; Michael Häusser; Bill Karsh; Peter Ledochowitsch; Carolina Mora Lopez; Catalin Mitelut; Silke Musa; Michael Okun; Marius Pachitariu; Jan Putzeys; P Dylan Rich; Cyrille Rossant; Wei-Lung Sun; Karel Svoboda; Matteo Carandini; Kenneth D Harris; Christof Koch; John O'Keefe; Timothy D Harris
Journal:  Nature       Date:  2017-11-08       Impact factor: 49.962

3.  Training deep neural density estimators to identify mechanistic models of neural dynamics.

Authors:  Pedro J Gonçalves; Jan-Matthis Lueckmann; Michael Deistler; Marcel Nonnenmacher; Kaan Öcal; Giacomo Bassetto; Chaitanya Chintaluri; William F Podlaski; Sara A Haddad; Tim P Vogels; David S Greenberg; Jakob H Macke
Journal:  Elife       Date:  2020-09-17       Impact factor: 8.140

4.  Distinct current modules shape cellular dynamics in model neurons.

Authors:  Adel Alturki; Feng Feng; Ajay Nair; Vinay Guntu; Satish S Nair
Journal:  Neuroscience       Date:  2016-08-13       Impact factor: 3.590

5.  Gamma Oscillations in the Basolateral Amygdala: Biophysical Mechanisms and Computational Consequences.

Authors:  Feng Feng; Drew B Headley; Alon Amir; Vasiliki Kanta; Ziao Chen; Denis Paré; Satish S Nair
Journal:  eNeuro       Date:  2019-02-05
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.